BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03890.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487167 jgi|Araly1|487167|fgenesh2_kg.6__301__AT5G03890.1 845 0.0
Ahg478339 jgi|Araly1|478339|fgenesh2_kg.3__1040__AT3G10120.1 139 2e-32
> Ahg487167 jgi|Araly1|487167|fgenesh2_kg.6__301__AT5G03890.1
Length=538
Score = 845 bits (457), Expect = 0.0
Identities = 515/542 (95%), Gaps = 8/542 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAGATGATGGTAAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAAATGATGGGAAG 60
Query 61 GTACTTGAATATAGAGAACCAATTAGTGTTCATCACATCCTTACTCAATTCTCTGGTCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTACTTGAATATAGAGAACCAATTAGTGTTCATCACATCCTTACTCAATTCTCTGGTCAC 120
Query 121 TC-CATCTCTCACAACAACACTCATCTCCTGCCTGATGCTAAGCTTCTCTCTGGCCGTCT 179
|| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 121 TCTC-TCTCTCACAACAACACTCATCTTCTGCCTGATGCTAAGCTTCTCTCTGGTCGTCT 179
Query 180 CTATTATCTCCTGCCTACAACAATGACCAAGAAGAAGGTCAACAAGAAAGTGACCTTTGC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 180 CTATTATCTCCTGCCTACAACAATGAACAAGAAGAAGGTCAACAAGAAAGTGACGTTTGC 239
Query 240 GAATCCGGAGGTGGAAGGCGACGAAAGATTACTTAGAGAAGAAGAAGATTCTAGTGAAAG 299
|||||||||||||||| | ||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 240 AAATCCGGAGGTGGAAGACAACGAAAGATCACTAAGAGAAGAAGAAGATACTAGTGAAAG 299
Query 300 CAACAGCAATATCGATGGTGATGACACCAAGAACGTAACTGTTGTAAGAATGAAGATCGT 359
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 300 CAACAGCAACATCGATGGTGATGACAACAAGAACGTAACTGTTGTGAGAATGAAGATCGT 359
Query 360 TGTGCATAAGCAAGAGTTGGAGAAGCTACTTCAAGGAGGGTCGGTCCATGAGATGATGTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTGCATAAGCAAGAGTTGGAGAAGCTACTTCAAGGAGGGTCGGTCCATGAGATGATGTA 419
Query 420 CCAGACTCTTGAGAAACAACTTTTACTTACTTCGTCTGATGATGATGATCTTGA--A-TG 476
||||||||| |||||||||||||| |||||| | ||||| |||||||||||| | ||
Sbjct 420 CCAGACTCTCGAGAAACAACTTTTGCTTACT--GA-TGATGGTGATGATCTTGATGAATG 476
Query 477 TAATAGCGGCTGGAGACCTGCGTTAGATAGCATACCCGAATCTGAAAGTCTCAGAAGAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TAATAGCGGCTGGAGACCTGCGTTAGATAGCATACCCGAATCTGAAAGTCTCAGAAGAAC 536
Query 537 AT 538
||
Sbjct 537 AT 538
> Ahg478339 jgi|Araly1|478339|fgenesh2_kg.3__1040__AT3G10120.1
Length=616
Score = 139 bits (75), Expect = 2e-32
Identities = 114/132 (86%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAGATGATGGTAAG 60
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||
Sbjct 77 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAATGAGAAATGATGGGAAA 136
Query 61 GTACTTGAATATAGAGAACCAATT-A-GTGTTCATCACATCCTTACTCAATTCTCTGGTC 118
||| ||||||| |||| ||| || | | |||||||||||||| || ||||||||| ||
Sbjct 137 GTAGTTGAATACAGAGGACCC-TTGAAG-GTTCATCACATCCTCACCCAATTCTCTCCTC 194
Query 119 ACTCCATCTCTC 130
||| | ||||||
Sbjct 195 ACTAC-TCTCTC 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5