BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03900.2
Length=2013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487168 jgi|Araly1|487168|fgenesh2_kg.6__302__AT5G03900.2 3083 0.0
> Ahg487168 jgi|Araly1|487168|fgenesh2_kg.6__302__AT5G03900.2
Length=1983
Score = 3083 bits (1669), Expect = 0.0
Identities = 1896/2003 (95%), Gaps = 25/2003 (1%)
Strand=Plus/Plus
Query 1 TAACTAAAGAAGAAGAAGAAGATAAAGCTTTGTAATTTATAGAATGGCGTGTGTATCGAC 60
||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 1 TAACTAAAGAAGACGAAGAAGATAAAGATTTGTACTTTATAGAATGGCGTGTGTATCTAC 60
Query 61 ATGCTTGATTCTCTCCCCTAGGTTAACTCAAGTGGGTTTATCATCAAAGAAGCCTTTTTT 120
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGCTTAATCCTATCCCCTAGGTTAACTCAAGTGGGTTTATCATCAAAGAAGCCTTTTTT 120
Query 121 GATTCGGCTCAGATCTCCTGTTGATCGTTACTCTTTTCCCAGAATGTTAACGGAGAGGTG 180
|||||||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 121 GATTCGGCTCAGATCTCCCGTTGATCGTTACTCTTTCCCCGGAATCTTAACGGAGAGGTG 180
Query 181 TTTGAGCACTCGTCGGAAGTTTAATCGCCATGGAATCGCTGTGGTGAAGGCTGCGAGTTT 240
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TGTGAGCACTCGTCGGAAGTTTAATCGCCATGGAATCGCGGTGGTGAAGGCTGCGAGTTT 240
Query 241 AGATAAGGTTAGCGGCGCAATCAAACCAGGTGGATTGGTGGAGAGTGACAAGTTGCCGAC 300
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 241 AGATAAGGTTAGCGGCGCAATCAAACCAGGAGGATTGGTGGAGAGTGATAAGTTGCCGAC 300
Query 301 TGATGTACGGAAACGAGCGATGGATGCGGTAGATGAGTGTGGCCGGAGAGTAACTGTTGG 360
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 301 TGATGTACGGAAACGAGCGATGGATGCGGTGGATGAGTGTGGCCGGAGAGTCACTGTTGG 360
Query 361 TGATGTTGCTAGTAGAGGTGGCTTGAAGGTTACTGAAGCTCAGACAGCTCTTCAAGCTAT 420
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 361 TGATGTTGCTAGTAGAGCTGGCTTGAAGGTTACTGAAGCTCAGACAGCACTTCAAGCTCT 420
Query 421 AGCGGCTGATACTGATGGGTTTTTGGAGGTGTCGGATGAAGGTGATGTGCTTTATGTTTT 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TGCGGCTGATACTGATGGGTTTTTGGAGGTGTCTGATGAAGGTGATGTGCTTTATGTTTT 480
Query 481 CCCAAGGGACTATCGAACTAAGTTGGCTGCCAAGTCGTTAAGGATACAAATTGAACCATT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCCAAGGGACTATCGAACTAAGTTGGCTGCCAAGTCGTTAAGGATACAAATTGAACCATT 540
Query 541 CCTTGAAAAGGCAAAGGGTGCTGTAGATTATTTGGCTCGTGTTTCCTTTGGCACGGCGCT 600
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGAAAAGGCAAAGGGTGCTATAGACTATTTGGCTCGTGTTTCCTTTGGCACGGCGCT 600
Query 601 TATAGCGTCTATCGTTATTGTCTACACGTCAATTATAGCCCTGCTTTCAAGCAAAAGCGA 660
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 601 TATAGCGTCTATTGTTATTGTCTACACGTCAATTATAGCCCTACTTTCAAGCAGAAGCGA 660
Query 661 GGATGATAATCGTCAAAGAAGACGCGGGCGCAGTTATGATTCAGGATTCAATTTCTATAT 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 GGATGATAATCGTCAAAGAAGACGCGGGCGCAGTTATGATTCTGGATTCAATTTCTATAT 720
Query 721 CAACCCTGTCGATCTGCTTTGGTACTGGGATCCCAATTATTACAACAGGCGACGAGCTCG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAACCCTGTCGATCTGCTTTGGTACTGGGATCCCAATTATTACAACAGGCGACGAGCTCG 780
Query 781 AGAAGATGAAGGAAAGGGAATGAATTTCATTGAATCTGTTTTCTCGTTTGTATTTGGAGA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGAAGATGAAGGAAAGGGAATGAATTTCATTGAATCTGTTTTCTCGTTTGTATTTGGAGA 840
Query 841 TGGAGACCCAAATCAAGGAATCGAAGAAGAGAGATGGCAGATGATTGGGCAGTATATAAC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 TGGAGACCCAAATCAAGGAATCGAAGAAGAGAGATGGCAGATGATTGGGCAGTACATAAC 900
Query 901 ATCTAGAGGAGGTGTTGTTGCCGCTGATGAACTTGCTCCATACCTTGATGTGCCATCTTC 960
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCTAGAGGAGGTGTTGTTGCAGCTGATGAACTTGCTCCATACCTTGATGTGCCATCTTC 960
Query 961 AAAGAGTGCTATGAACGATGAATCCTACATTCTACCTGTTCTTCTTCGGTTTGATGGTCA 1020
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAGACTGCTATGAATGATGAATCCTACATTCTACCTGTTCTTCTTCGGTTTGATGGTCA 1020
Query 1021 ACCTGAGTTGGATGAAGAGGGAAATATTTTGTATTGTTTTCCGTCCCTGCAACGTACAGC 1080
||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1021 ACCTGAGTTGGATGACGAGGGAAATATTTTGTATCGCTTTCCGTCCCTGCAACGTACAGC 1080
Query 1081 TTCTGGATCTAGTAGACGAAAAGAATATGTGGGAAAATGGTTTGACTGGGTTGCAGATAT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTCTGGATCTAGTAGACGAAAAGAATATGTGGGAAAATGGTTTGACTGGGTTGCAGATAT 1140
Query 1141 GGAGAAATTCTTCAAGGAGAAAAAATGGCAATTTAGTAAAACAAGTACATCTGAGAGAGC 1200
||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||||
Sbjct 1141 GGAGAAATTCTTCAAAGAGAAAAAATGGCAATTTAGTAAAACAAGTTCTTCCGAGAGAGC 1200
Query 1201 ACTGGTCATTGGCCTAGGTGCGGTTAATCTCTTTGGTGTTATTGTTCTAAACACATTGCT 1260
| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1201 ATTAGTCATTGGCCTAGGTGCGGTTAATCTTTTTGGTGTTATTGTTCTAAACACATTGCT 1260
Query 1261 AAACGAGATGTCTGTCAGGCCAGGTGGATTTCTTACATTTGTTAAGAACATATATCCACT 1320
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1261 AAACGAGATGGCTGTCAGGCCAAGTGGATTTCTTACATTTGTTAAGAACATATATCCATT 1320
Query 1321 ACTTCAGATATACGCAGGTTCATTCTTTACCATCCCTTTGATTCGGTGGTTTTCAATCAA 1380
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1321 ACTTCAGATATACGCAGGTTCATTCTTTGCTATCCCTTTGATTCGGTGGTTTTCAATCAA 1380
Query 1381 GAGAAAGAATAATCAGATAGAGAACAGAAACAAAGCTCGGCTACAATTTGCTCGAGCACT 1440
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1381 GAGAAAGAATAATCAGATAGAGAACAGAAACAAAGCTCGGTTACAATTTGCACGAGCACT 1440
Query 1441 TGAATCTCCAGATATCGCACTACGGCGTAAGCTACTTAGTGCAAGGGATATGGCTCAAAA 1500
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1441 TGAATCTCCAGATATCGCACTACGGCGTAAGCTACTAAGTGCAAGGGATATGGCTCAGAA 1500
Query 1501 AACAGTCATAGGGAAGGATCGGATCGTGTACAGTACAGATAGAGATATGATGGAACAAAA 1560
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TACAGTGATCGGGAAGGAGCGGATCGTGTACAGTACAGATAGAGATATGATGGAACAAAA 1560
Query 1561 CTATGAGACAGACGAATGGGACAGGAGATTCAAAGAGTTAGAAAAATCGGATTGAAATGT 1620
||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1561 CTACGAGACAGACGAGTGGGACAGAAGATTCAAAGAGTTGGAAAAATCGGATTGAAATGT 1620
Query 1621 GAAATCTGGGACTTGTGACCTTTTGCTGTTATATGCTAAGTTACGTAGCAGCTCACACAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GAAATCTGGGACTTGTGACCTTTTGCTGTTATATGCTAAGTTACGTAGCAGCTCACACAT 1680
Query 1681 CATCCGCAACACAGAATTTTCCCAACAACGTAAAAA--CATTCATGG-ACGCTGGAGTTA 1737
|||||||||||||||| | || ||||||| |||||| ||| ||||| | ||| |||||
Sbjct 1681 CATCCGCAACACAGAACTATCTCAACAACTTAAAAAAACATACATGGGA-GCTCGAGTTC 1739
Query 1738 AAGCGGATGACACAAGCCATGGCACATACTGTTTAGACATTCTTCCTCTCTCTGAGACAG 1797
||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1740 AAGGGGATGACACAAGCCATGGTACATACTATTTAGACATTCTTCCTCTCTCTGAGACA- 1798
Query 1798 AAAATAACTGGTTTATAGAGGTCTCTTAAGCTCTAGTGGTAATAGACCATTTTGTGATGC 1857
| ||| |||||||||||||| |||||||||||||||||| |||
Sbjct 1799 A--------GGT----------CTCTTAAGCTCTAGAAGTAATAGACCATTTTGTGCTGC 1840
Query 1858 TCCGTAACACAACAAGCTTGGTCTTGTTTAAATCATCCAGGAGATCCAAGTATTGCTT-- 1915
||| |||||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1841 TCCTTAACACAACAAGCTTGGTGTTGTTTATATCATCCAGGAGATCTAAGTATTGCTTTT 1900
Query 1916 GTTCCTGAGAGTTACTACAAATGCAACAATAGATTATGTACATTAATTTGTATATACGAA 1975
||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1901 GTTCCTGAGAGATACTATAAATGCAACAATAGATTATGTACAGTAATTTGTATATACGAA 1960
Query 1976 AGTCCAAATTCTTGCTCATAAGA 1998
|||||||||||||||||||||||
Sbjct 1961 AGTCCAAATTCTTGCTCATAAGA 1983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75685316815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5