BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03910.1
Length=2207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487170 jgi|Araly1|487170|fgenesh2_kg.6__304__AT5G03910.1 3210 0.0
> Ahg487170 jgi|Araly1|487170|fgenesh2_kg.6__304__AT5G03910.1
Length=1977
Score = 3210 bits (1738), Expect = 0.0
Identities = 1900/1979 (96%), Gaps = 7/1979 (0%)
Strand=Plus/Plus
Query 2 AATTATCACCGAATTAGAATTAGAAGTTGATTCGTTTTGGTTCGATTAAATTTGTTTTGG 61
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AATTATCACCAAATTAGAAATAGAAGTTGATTCGTTTTGGTTCGATTCAATTTGTTTTGG 60
Query 62 AGAGAAATGTCATTTCTCCT-C-C-TAACACCGCCGCCGTGTCTTCTCATTCCTCCGCCG 118
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||
Sbjct 61 AGAGAAATGTCATTTCTCCTCCGCGTAACACCGCCGCCGTGTCTTCTCATTCCTCCTCCG 120
Query 119 CCGCTATCTCATCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 178
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCTATCTCACCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 180
Query 179 AGACCTTTGAGCTTCTGTAAACCCTCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 238
|||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AGACCTCTGAGCTCCGGTAAACCATCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 240
Query 239 TCACTAAAAGCCC-TCGAAACTATTAAACCCTATCTTCAATCGGAATCTAAAACCGTCCT 297
||||||||| ||| |||||| | ||||||||||||| |||||||||||||||||| ||||
Sbjct 241 TCACTAAAA-CCCTTCGAAAATGTTAAACCCTATCTACAATCGGAATCTAAAACCATCCT 299
Query 298 ACTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCTAGGCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 300 CCTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCAAGACT 359
Query 358 CGGCTCCTTCACTTCCAACCTTAACGCAAACGCCGCGAGCTTGACGAAGCTCAAAGGCGA 417
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 360 CGGCTCCTTCACTTCCAGCCTAAACGCAAACGCCGCGAGCTTGATGAAGCTCAAAGGCGA 419
Query 418 ATGTCTCGTTTTGGCGGGTCTGGTTTTGGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 477
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 ATGTCTCGTTTTGGCGGGTTTGGTTTTAGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 479
Query 478 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGGGTTTTCGCGTATAGGAG 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 480 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGTGTTTTCGCGTATCGGAG 539
Query 538 GGTTTTAGAGAGAGAACTAGAGTTCTTTGAAGGTGGCAATGGGATTTCATCAGGAGACAT 597
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GGTTTTAGAGAGGGAATTAGAGTTCTTTGAAGGTGGGAATGGGATTTCATCAGGAGACAT 599
Query 598 TGCTTACAGGATCACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 657
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTTACAGGATTACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 659
Query 658 CACAGTTGTGCCCAGTGCTATTCAGATATCTGTAATGACGGCACATATGATTGTTGCAAG 717
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 660 CACAGTTGTGCCCAGTGCTATCCAGATATTTGTAATGACGGCACATATGATTGTTGCAAG 719
Query 718 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATACCATCTGTTGCGCTTCTTATAGCATA 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 720 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATTCCATCTGTTGCGCTTCTTACAGCGTA 779
Query 778 TCTTGGTGACCGGCTTCGTAAGATATCTAGAAAAGCACAGATTGCCTCTGCTCAACTTTC 837
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 780 TCTTGGTGATCGGCTTCGTAAGATATCTAGAAAGGCACAGATTGCTTCTGCTCAACTTTC 839
Query 838 TACCTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTCAAGGCTAATAACGCAGAGAT 897
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 840 TACTTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTGAAGGCTAATAACGCAGAGAT 899
Query 898 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGACCTAGATGAACGGTTTAAGAA 957
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 900 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGCCCTAGATGAAAATTTTAAGAA 959
Query 958 GAAGAAAATGAAGTCACTTATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1017
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGAAAATGAAGTCACTCATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1019
Query 1018 GATATTTTGTGTTGGAGCTGTTATCCTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1077
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1020 GATATTTTGTGTTGGAGCAGTGATACTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1079
Query 1078 TTCCTTCGTGGCATCATTAGCTTTCTTGATCGATCCTGTCCAGGATTTGGGAAAAGCTTA 1137
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 GTCCTTCGTAGCATCTTTAGCTTTCTTGATTGATCCTGTCCAGGATTTGGGAAAAGCTTA 1139
Query 1138 TAATGAATTGAAACAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1197
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAATGAATTGAAGCAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1199
Query 1198 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGAGAAGTTGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGCGAAGTTGA 1259
Query 1258 GTTATGCGATATATCATTTAAATATGACGAAAATATGCTTCCCGTTTTGGATGGGTTAAA 1317
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1260 GTTATGCGATATATCATTTAAATATGACGAGAATATGCTTCCTGTTTTGGATGGGTTAAA 1319
Query 1318 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGACCATCTGGAGGAGGAAAGAC 1377
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1320 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGGCCATCTGGAGGAGGAAAGAC 1379
Query 1378 AACACTGATCAAATTGCTCCTCCGCCTTTACGAACCTTCATCTGGCTCTATCATCATTGA 1437
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1380 AACACTGATCAAATTGCTCCTCCGCCTTTATGAACCTTCATCTGGCTCTATCTTCATTGA 1439
Query 1438 CAAAATTGACATCAAGGATATCAAACTGGAAAGTTTGAGGAAACATGTTGGTCTAGTTTC 1497
||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1440 CAAAAATGACATCAAGGATATCAAATTGGAAAGTTTGAGGAAGCATGTTGGTCTGGTTTC 1499
Query 1498 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1559
Query 1558 GACAGGAATTGACATGAAGAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1617
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GACAGGAATTGACATGAAAAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1619
Query 1618 TATCAGAAACCTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1677
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TATCAGAAACTTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1679
Query 1678 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAAATCATCCATACT 1737
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1680 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAATTCATCGGTACT 1739
Query 1738 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1799
Query 1798 TCTTGAACGTGTAATGCAAGACCATACGGTGATAGTGATTGCACATAGACTGGAGACAGT 1857
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1800 TCTTGAACGTGTAATGCAAGACCATACGGTAATTGTGATAGCACATAGACTGGAGACAGT 1859
Query 1858 GATGATGGCGCAGAGAGTGTTCTTGGTAGAGAGGGGAAAACTAAAGGAATTGAATCGCTC 1917
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1860 GATGATGGCGCAGAGAGTGTTCTTGTTAGAGAGGGGAAAGCTAAAGGAATTGAATCGCTC 1919
Query 1918 TTCTCTGTTAAGTACTCACAAAGACTCACTGA-CATCAGCTGGACTCGTGATTTGAGAT 1975
||||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||
Sbjct 1920 TTCTCTGTTAAGTACTCACAAGGACTCACT-ATCATCAGCTGGACTCGTGATTTAAGAT 1977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83074824345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5