BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03910.1 Length=2207 Score E Sequences producing significant alignments: (Bits) Value Ahg487170 jgi|Araly1|487170|fgenesh2_kg.6__304__AT5G03910.1 3210 0.0 > Ahg487170 jgi|Araly1|487170|fgenesh2_kg.6__304__AT5G03910.1 Length=1977 Score = 3210 bits (1738), Expect = 0.0 Identities = 1900/1979 (96%), Gaps = 7/1979 (0%) Strand=Plus/Plus Query 2 AATTATCACCGAATTAGAATTAGAAGTTGATTCGTTTTGGTTCGATTAAATTTGTTTTGG 61 |||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 1 AATTATCACCAAATTAGAAATAGAAGTTGATTCGTTTTGGTTCGATTCAATTTGTTTTGG 60 Query 62 AGAGAAATGTCATTTCTCCT-C-C-TAACACCGCCGCCGTGTCTTCTCATTCCTCCGCCG 118 |||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||| Sbjct 61 AGAGAAATGTCATTTCTCCTCCGCGTAACACCGCCGCCGTGTCTTCTCATTCCTCCTCCG 120 Query 119 CCGCTATCTCATCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 178 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCGCTATCTCACCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 180 Query 179 AGACCTTTGAGCTTCTGTAAACCCTCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 238 |||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 181 AGACCTCTGAGCTCCGGTAAACCATCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 240 Query 239 TCACTAAAAGCCC-TCGAAACTATTAAACCCTATCTTCAATCGGAATCTAAAACCGTCCT 297 ||||||||| ||| |||||| | ||||||||||||| |||||||||||||||||| |||| Sbjct 241 TCACTAAAA-CCCTTCGAAAATGTTAAACCCTATCTACAATCGGAATCTAAAACCATCCT 299 Query 298 ACTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCTAGGCT 357 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 300 CCTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCAAGACT 359 Query 358 CGGCTCCTTCACTTCCAACCTTAACGCAAACGCCGCGAGCTTGACGAAGCTCAAAGGCGA 417 ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| Sbjct 360 CGGCTCCTTCACTTCCAGCCTAAACGCAAACGCCGCGAGCTTGATGAAGCTCAAAGGCGA 419 Query 418 ATGTCTCGTTTTGGCGGGTCTGGTTTTGGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 477 ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 420 ATGTCTCGTTTTGGCGGGTTTGGTTTTAGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 479 Query 478 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGGGTTTTCGCGTATAGGAG 537 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 480 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGTGTTTTCGCGTATCGGAG 539 Query 538 GGTTTTAGAGAGAGAACTAGAGTTCTTTGAAGGTGGCAATGGGATTTCATCAGGAGACAT 597 |||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 GGTTTTAGAGAGGGAATTAGAGTTCTTTGAAGGTGGGAATGGGATTTCATCAGGAGACAT 599 Query 598 TGCTTACAGGATCACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 657 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGCTTACAGGATTACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 659 Query 658 CACAGTTGTGCCCAGTGCTATTCAGATATCTGTAATGACGGCACATATGATTGTTGCAAG 717 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 660 CACAGTTGTGCCCAGTGCTATCCAGATATTTGTAATGACGGCACATATGATTGTTGCAAG 719 Query 718 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATACCATCTGTTGCGCTTCTTATAGCATA 777 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 720 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATTCCATCTGTTGCGCTTCTTACAGCGTA 779 Query 778 TCTTGGTGACCGGCTTCGTAAGATATCTAGAAAAGCACAGATTGCCTCTGCTCAACTTTC 837 ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 780 TCTTGGTGATCGGCTTCGTAAGATATCTAGAAAGGCACAGATTGCTTCTGCTCAACTTTC 839 Query 838 TACCTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTCAAGGCTAATAACGCAGAGAT 897 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 840 TACTTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTGAAGGCTAATAACGCAGAGAT 899 Query 898 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGACCTAGATGAACGGTTTAAGAA 957 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 900 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGCCCTAGATGAAAATTTTAAGAA 959 Query 958 GAAGAAAATGAAGTCACTTATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1017 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GAAGAAAATGAAGTCACTCATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1019 Query 1018 GATATTTTGTGTTGGAGCTGTTATCCTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1077 |||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 1020 GATATTTTGTGTTGGAGCAGTGATACTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1079 Query 1078 TTCCTTCGTGGCATCATTAGCTTTCTTGATCGATCCTGTCCAGGATTTGGGAAAAGCTTA 1137 |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1080 GTCCTTCGTAGCATCTTTAGCTTTCTTGATTGATCCTGTCCAGGATTTGGGAAAAGCTTA 1139 Query 1138 TAATGAATTGAAACAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1197 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 TAATGAATTGAAGCAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1199 Query 1198 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGAGAAGTTGA 1257 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1200 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGCGAAGTTGA 1259 Query 1258 GTTATGCGATATATCATTTAAATATGACGAAAATATGCTTCCCGTTTTGGATGGGTTAAA 1317 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1260 GTTATGCGATATATCATTTAAATATGACGAGAATATGCTTCCTGTTTTGGATGGGTTAAA 1319 Query 1318 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGACCATCTGGAGGAGGAAAGAC 1377 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1320 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGGCCATCTGGAGGAGGAAAGAC 1379 Query 1378 AACACTGATCAAATTGCTCCTCCGCCTTTACGAACCTTCATCTGGCTCTATCATCATTGA 1437 |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1380 AACACTGATCAAATTGCTCCTCCGCCTTTATGAACCTTCATCTGGCTCTATCTTCATTGA 1439 Query 1438 CAAAATTGACATCAAGGATATCAAACTGGAAAGTTTGAGGAAACATGTTGGTCTAGTTTC 1497 ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| Sbjct 1440 CAAAAATGACATCAAGGATATCAAATTGGAAAGTTTGAGGAAGCATGTTGGTCTGGTTTC 1499 Query 1498 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1559 Query 1558 GACAGGAATTGACATGAAGAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1617 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 GACAGGAATTGACATGAAAAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1619 Query 1618 TATCAGAAACCTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1677 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 TATCAGAAACTTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1679 Query 1678 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAAATCATCCATACT 1737 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1680 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAATTCATCGGTACT 1739 Query 1738 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1799 Query 1798 TCTTGAACGTGTAATGCAAGACCATACGGTGATAGTGATTGCACATAGACTGGAGACAGT 1857 |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 1800 TCTTGAACGTGTAATGCAAGACCATACGGTAATTGTGATAGCACATAGACTGGAGACAGT 1859 Query 1858 GATGATGGCGCAGAGAGTGTTCTTGGTAGAGAGGGGAAAACTAAAGGAATTGAATCGCTC 1917 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1860 GATGATGGCGCAGAGAGTGTTCTTGTTAGAGAGGGGAAAGCTAAAGGAATTGAATCGCTC 1919 Query 1918 TTCTCTGTTAAGTACTCACAAAGACTCACTGA-CATCAGCTGGACTCGTGATTTGAGAT 1975 ||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||| Sbjct 1920 TTCTCTGTTAAGTACTCACAAGGACTCACT-ATCATCAGCTGGACTCGTGATTTAAGAT 1977 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83074824345 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5