BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03920.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487171 jgi|Araly1|487171|fgenesh2_kg.6__305__AT5G03920.1 758 0.0
Ahg939784 jgi|Araly1|939784|scaffold_600328.1 268 3e-71
> Ahg487171 jgi|Araly1|487171|fgenesh2_kg.6__305__AT5G03920.1
Length=590
Score = 758 bits (410), Expect = 0.0
Identities = 551/615 (90%), Gaps = 26/615 (4%)
Strand=Plus/Plus
Query 1 GTTAAAAGTAGATGGAGAAGTCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCGGGAG 60
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTTAAAAGTCGATGGAGAAATCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCCGGAG 60
Query 61 CTAAGGAACTTCCCAAACCCAAAATCTCCATGTCGGATCTCACCTTTGTCATAGGCGTGT 120
||||||||||| |||||||| | | | |||| | ||| |||||
Sbjct 61 CTAAGGAACTTGCCAAACCC---A-----A--T---ATCT---C-----CAT---CGTGT 96
Query 121 ACACAACCAAATCAAAGAAGTTAACAGTTGTAGAATTTGGCGCGGACCGCGAGTTTAACC 180
|||||||||||||||||||||||||| ||||||||| ||| | |||||||||||| ||
Sbjct 97 ACACAACCAAATCAAAGAAGTTAACACTTGTAGAATCTGGTAAGAACCGCGAGTTTAGCC 156
Query 181 -CTAATGACCGGTTCAAAATAGAAATCGTAGACTTGAGTCGTTTTGAACTGCCCAAGTCT 239
| |||||||||||| |||||||||||||||||||| | ||||| ||| ||||||||||
Sbjct 157 AC-AATGACCGGTTCCAAATAGAAATCGTAGACTTGCGCCGTTTCGAAGTGCCCAAGTCC 215
Query 240 GGTATGGATGATGTAATGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAAAACATT 299
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 216 AGTATGGGTGATGTAACGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAAAACGTT 275
Query 300 GTCACAATCGTTAAAGGTCGAAGGTCATTAGACACAAACTTACGATGGTTGTTCAACGAT 359
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GCCACAATCGTTAAAGCTCGAAGGTCATTAGACACAAACTTACGATGGTTGTTCAACGAT 335
Query 360 CTTCTTGCTCCAGAAGATCTAATCAGACGTGGCCTAACCGGCGATGTCAAGGTGAGTTTA 419
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 336 CTTCCTGCTCCAGAAGATCTAATCAGACGTGGCCTAACCGCCGATGTCAAGGTGAGTTTA 395
Query 420 AACGGCGACTTACTTGACAAGATCAGCCTTGAGATATTCATTGAAAGCGACCAGAGATAT 479
|||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||
Sbjct 396 AACGGCGACTTACTTGACAAGATCAGCCTTGAAATATTCATCGAAAACGACAAGAGATAT 455
Query 480 TTTTCCCCTGAAGATACTCTTAGATATCTTCAATGTTTTTTCCCCTCTAAAAACTAATTA 539
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 TTTTCCCCTGACGATACTCTTAGATATCTTCAATGTTTTTTCTTCTCTAAAAACTAATTA 515
Query 540 TTATGTATATACAAAGTCTGTGAAATTTAAAAATATGTAAGCGTTTCTACCTAAATAATC 599
|||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 516 TTATGTATATCCAAAGTCTATGAAAGTTAAAAAAATGTATGCGTTTCTACCTAAATAATC 575
Query 600 AAGAGCTTTGTTTTG 614
| |||||||||||||
Sbjct 576 ATGAGCTTTGTTTTG 590
> Ahg939784 jgi|Araly1|939784|scaffold_600328.1
Length=557
Score = 268 bits (145), Expect = 3e-71
Identities = 433/566 (77%), Gaps = 43/566 (8%)
Strand=Plus/Plus
Query 9 TAGATGGAGAAGTCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCGGGAGCT-A--A- 64
||||| ||||||||||| |||||||| || |||||||||| || |||||| | |
Sbjct 1 TAGATTGAGAAGTCCCC---CATCATGGCCAAAAAAGGAGAACATTCCGGAGCTAAGGAT 57
Query 65 G-G-AACTTCCCAAACCCAAAATCTCCATGTCGGATCTCACCTTTGTCATAGGCGTGTAC 122
| | ||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 GTGAAACTTGCCAAACCCAAAATCTCCATGTCGGATCTCACCTTTGTCATTTA--TGTA- 114
Query 123 ACAACCAAATCAAAGAAGTTAACAGTTGTAGAAT-TTGGCGCGGACCGCGAGTTTAAC-C 180
|| ||| || ||||| |||| || || |||| |||| ||||| | |||||| | |
Sbjct 115 ACTACCGAAGAAAAGATGTTAGCACTTA-AGAAACTTGGTGCGGAGCTAGAGTTTGGCTC 173
Query 181 CTAATGACCGGTTCAAAATAGAAATCGTAGACTTGAGTCGTTTTG-AACTGCCCAAGTCT 239
| ||| | |||||| | ||| || ||| | ||||||| | | | | || || | |||||
Sbjct 174 C-AATAATCGGTTCCATATACAAGTCGAAAACTTGAGCCATCTCGGAA-TGTCAAAGTCC 231
Query 240 GGTATGGA-TGATGTAA-TGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAA-AA- 295
||||| | || ||||| | |||| || |||||| |||||||| | |||||| || ||
Sbjct 232 AGTATG-ACTGGTGTAAAT-ATCAAGTGCGAAGTCATTTATAAGGATGATTGGGAAGAAG 289
Query 296 -C-ATT--GTCACAATCGTTAAAGGTCGAAGGTCATTAGACACAAACTTACGATGGTTGT 351
| | |||| ||||||| | | ||||||| |||||||||||||||| ||||| ||
Sbjct 290 ACGACAACGTCATAATCGTTGATGCTCGAAGGCCATTAGACACAAACTTTGGATGGCTGA 349
Query 352 TCAACGATCTTCTTGCTCCAGAAGATCTA-ATC--AGAC-GTGGCCTAACCGGCGATGTC 407
|||||||||| || ||||| ||| | || ||| | || | |||||| || |||| ||
Sbjct 350 ACAACGATCTTGTTACTCCAAAAGGT-TATATCTTAAACCGCGGCCTAGTCGCCGATATC 408
Query 408 A-AGGTGAGTTTAAACG-GCGACTTACTTGACAAGATC-AGCCTTGAGATATTC-ATTGA 463
| || ||||||| || | ||| ||| ||||||||||| | ||| |||||||| || |
Sbjct 409 ACAG-TGAGTTTCAA-GAGCGGGTTATTTGACAAGATCGA-CCTACAGATATTCCATC-A 464
Query 464 AAGCGACCAGAGATATTTTTCCCCTGAAGATACTCTTAGATATCTTCAATGTTTTTTCCC 523
| |||| |||||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 465 AGGCGAGGGGAGATATTTTTCCCTTGACGATACTCTTACTTATCTTCAATGTTTTTTCCT 524
Query 524 CTCTAAAAACTAA-TTATTATGTATA 548
|||||||| |||| |||| || ||||
Sbjct 525 CTCTAAAATCTAACTTAT-ATATATA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5