BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03930.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487172 jgi|Araly1|487172|fgenesh2_kg.6__306__AT5G03930.1 617 2e-176
Ahg939784 jgi|Araly1|939784|scaffold_600328.1 361 4e-99
> Ahg487172 jgi|Araly1|487172|fgenesh2_kg.6__306__AT5G03930.1
Length=534
Score = 617 bits (334), Expect = 2e-176
Identities = 470/533 (88%), Gaps = 20/533 (4%)
Strand=Plus/Plus
Query 1 GTGATGATGGCCAAAGAAGGAGAACATTCCGGAGCTAAGGAAGTGAAACTTACCAAACCC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGATCATGGCCAAAGAAGGAGAACATTCCGGAGCTAAGGAAGTGAAACTTACCAAACCC 60
Query 61 AAAATTTCCTTGTCGGATCTCACCTTTGTCATTTACGTAACTACCCG-AGAAAAGCTATC 119
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 61 AAAATCTCCTTGTCGGATCTCACCTTTGTCATTTACGTAACTACC-GTAGAAAAGATATC 119
Query 120 ATCTTCTACCA-TAAGTTGTGA-GGAGATACCACTTAAGAAATGTGGCGCGGAGCTAGAG 177
||||||| || | | || | | ||||| | | ||||||||||||| ||||||||||||
Sbjct 120 ATCTTCTTGCAATCA-TTAT-ACGGAGAAAGAATTTAAGAAATGTGGTGCGGAGCTAGAG 177
Query 178 TGTGGCTCCAATGATCGATTCCATATACAAGTCGAAAACTTGAGCCATATGGGAATCTCC 237
||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 178 TGTGGCTCCAATGATCGGTTCCATATACAAGTCGAAAACTTGAGTCATAGGGGAATCTCC 237
Query 238 AAGTCTAGAATGGCTGGTGTA-AAGATCGAGTGCGAGGTCATTTATAAGGAAGACTCGGA 296
|||||||| |||||||||||| || ||| ||||||| |||||||||||||| || | |||
Sbjct 238 AAGTCTAGTATGGCTGGTGTAGAA-ATCAAGTGCGAAGTCATTTATAAGGATGATTGGGA 296
Query 297 AGACGAGGCGGTAGTT-AGAATCGTTAATGCTGAAAGGCCATTAGGCACAAACTTTGGAT 355
||||| | ||| || | |||| || ||||| |||||||||||| ||||||||||||||
Sbjct 297 AGACG-G-CGGC--TTCATAATCTTTGATGCTCAAAGGCCATTAGACACAAACTTTGGAT 352
Query 356 GGCTGAACAACGATCTTCTT-GCTCCAC-TAGCTCAT--CGTGGTCTAA-CAGCCGAAAT 410
||||||||||||||||| || |||||| ||| | || || || ||| | ||||| ||
Sbjct 353 GGCTGAACAACGATCTT-TTAGCTCCAAATAGGTTATATCGCGGCCTAGTC-GCCGACAT 410
Query 411 CCAGCTGAGTTTCAACAGCGAGTTATTGGACAAGATCGACCTCCAGATATTCCACCGAGG 470
| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 CGAGCTGAGTGACAACAGCGAGTTATTGGACAAGATCGACCTTCAGATATTCCACCGAGG 470
Query 471 CGAGGGGAGATATTTTTCCCAAGACGATACTCTTGGTTATCTTCAATGTTTTT 523
||| || ||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 471 CGAAGGAAGATATTTTTCCCTTGACGATACTCTTAGTTATCTTCAATGTTTTT 523
> Ahg939784 jgi|Araly1|939784|scaffold_600328.1
Length=557
Score = 361 bits (195), Expect = 4e-99
Identities = 340/407 (84%), Gaps = 21/407 (5%)
Strand=Plus/Plus
Query 149 CACTTAAGAAA-TGTGGCGCGGAGCTAGAGTGTGGCTCCAATGATCGATTCCATATACAA 207
||||||||||| | ||| ||||||||||||| |||||||||| |||| ||||||||||||
Sbjct 137 CACTTAAGAAACT-TGGTGCGGAGCTAGAGTTTGGCTCCAATAATCGGTTCCATATACAA 195
Query 208 GTCGAAAACTTGAGCCATATGGGAATCTCCAAGTCTAGAATGGCTGGTGTAAAGATCGAG 267
|||||||||||||||||| | ||||| || ||||| || ||| |||||||||| ||| ||
Sbjct 196 GTCGAAAACTTGAGCCATCTCGGAATGTCAAAGTCCAGTATGACTGGTGTAAATATCAAG 255
Query 268 TGCGAGGTCATTTATAAGGAAGACTCGGAAGACGAGG-CGGTAGTTAGAATCGTTAATGC 326
||||| |||||||||||||| || | |||||| || | | || | ||||||| ||||
Sbjct 256 TGCGAAGTCATTTATAAGGATGATTGGGAAGAAGACGACAAC-GTCATAATCGTTGATGC 314
Query 327 T-GAAAGGCCATTAGGCACAAACTTTGGATGGCTGAACAACGATCTTCTTGCTCCACTAG 385
| ||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 315 TCGAA-GGCCATTAGACACAAACTTTGGATGGCTGAACAACGATCTTGTTACTCCAAAAG 373
Query 386 CTCAT--CGT-----G-GTC-TAA-CAGCCGAAATC-CAGCTGAGTTTCAACAGCGAGTT 434
| || | | | | | || | ||||| ||| ||| |||||||||| |||| |||
Sbjct 374 GTTATATCTTAAACCGCGGCCTAGTC-GCCGATATCACAG-TGAGTTTCAAGAGCGGGTT 431
Query 435 ATTGGACAAGATCGACCTCCAGATATTCCACCGAGGCGAGGGGAGATATTTTTCCCAAGA 494
||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||
Sbjct 432 ATTTGACAAGATCGACCTACAGATATTCCATCAAGGCGAGGGGAGATATTTTTCCCTTGA 491
Query 495 CGATACTCTTGGTTATCTTCAATGTTTTTTCC-CATCTAAAATCTAA 540
|||||||||| |||||||||||||||||||| | ||||||||||||
Sbjct 492 CGATACTCTTACTTATCTTCAATGTTTTTTCCTC-TCTAAAATCTAA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5