BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03940.1
Length=1888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487173 jgi|Araly1|487173|fgenesh2_kg.6__307__AT5G03940.1 2800 0.0
Ahg924584 jgi|Araly1|924584|scaffold_200145.1 364 1e-99
> Ahg487173 jgi|Araly1|487173|fgenesh2_kg.6__307__AT5G03940.1
Length=1813
Score = 2800 bits (1516), Expect = 0.0
Identities = 1722/1818 (95%), Gaps = 27/1818 (1%)
Strand=Plus/Plus
Query 18 GAGAGTCGTGAAAAGTTTTGAGCTTTGATCACTC-ACTCACTAGTAATGGAGGCTCTTCA 76
||||||| | |||||||||||||||||||||| | | |||||| ||||||||||||| ||
Sbjct 1 GAGAGTCATAAAAAGTTTTGAGCTTTGATCACACTATTCACTACTAATGGAGGCTCTGCA 60
Query 77 ATTTTCCAG---------CGTGAATAGAGTTCCTTGTACTCTGAGCTGTACCGGAAATAG 127
||||||||| ||||| ||||||||| | | | | | || || |||| | |
Sbjct 61 ATTTTCCAGCCATTTCTCCGTGAGTAGAGTTCC--GAATTAT-A-CTCTA--GGAATTCG 114
Query 128 GAGAATTAAG-GCTGCCTTCAGCTCTGCGTTCACCGGTGGCACCATCAATTCAGCTTCTC 186
||||| | || || | || |||||||| ||||||||| |||| ||||||||||||||
Sbjct 115 GAGAAGT-AGAGCAACATTTAGCTCTGCATTCACCGGT---ACCAGCAATTCAGCTTCTC 170
Query 187 TGTCCTCCTCTAGGAATCTCTCCACGCGAGAGATATGGAGTTGGGTGAAATCGAAGACTG 246
| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 171 --T-CTCCTCTAGGAATCCCTCAACGCGAGAGATATGGAGTTGGGTGAAATCGAAGAC-- 225
Query 247 TTGTTGGCCATGGAAGATACAGAAGAAGCCAAGTGAGAGCCGAGATGTTTGGTCAGTTGA 306
|||||| || |||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 226 -TGTTGGTCAAGGAAGATACAGAAGAAGCTATGTGAGAGCCGAGATGTTTGGACAGTTGA 284
Query 307 CTGGTGGCCTCGAGGCTGCTTGGAGCAAACTCAAAGGCGAAGAGGTCTTGACTAAGGACA 366
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 285 CTGGTGGACTCGAGGCTGCTTGGAGCAAACTCAAAGGCGAAGAGGTTTTGACCAAGGAGA 344
Query 367 ATATTGCTGAGCCAATGCGGGATATCAGAAGAGCTCTCCTGGAAGCAGATGTGAGTCTCC 426
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 345 ATATTGCCGAACCAATGCGAGATATTAGAAGAGCTCTCCTGGAAGCAGATGTGAGTCTCC 404
Query 427 CAGTTGTTAGAAGGTTTGTTCAGTCTGTTAGTGACCAAGCCGTTGGAATGGGTGTCATTC 486
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 405 CAGTTGTTAGAAGGTTTGTTCAATCTGTTAGTGACCAAGCCGTTGGAATGGGTGTCATTC 464
Query 487 GTGGAGTCAAACCAGATCAGCAATTGGTCAAGATTGTACATGATGAGCTAGTGAAATTGA 546
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GTGGAGTTAAACCAGATCAGCAATTGGTCAAGATTGTACATGATGAGCTAGTGAAATTGA 524
Query 547 TGGGTGGAGAAGTATCTGAGTTACAGTTTGCTAAATCAGGTCCTACAGTAATATTGTTGG 606
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 525 TGGGTGGAGAAGTATCTGAGTTACAGTTTGCTAAATCAGGCCCTACGGTAATATTGTTGG 584
Query 607 CTGGGCTCCAAGGAGTTGGAAAGACAACGGTTTGTGCTAAACTAGCTTGTTACCTAAAGA 666
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 585 CTGGACTCCAAGGAGTTGGAAAGACAACGGTTTGCGCTAAATTAGCTTGTTACCTAAAGA 644
Query 667 AGCAGGGAAAATCTTGCATGCTTATTGCTGGAGATGTATACCGACCTGCTGCTATCGATC 726
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 645 AGCAGGGAAAGTCTTGCATGCTTATTGCTGGAGATGTGTACCGACCTGCTGCCATCGATC 704
Query 727 AACTTGTCATTTTAGGTGAACAGGTTGGTGTGCCGGTTTATACAGCAGGGACTGATGTAA 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 705 AACTTGTCATTTTAGGTGAACAGGTTGGTGTGCCGGTTTATACAGCAGGGACTGATGTCA 764
Query 787 AACCTGCAGATATAGCTAAGCAAGGTCTAAAAGAAGCTAAAAAGAACAATGTTGATGTAG 846
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 765 AACCTGCAGATATAGCTAAGCAAGGTCTAAAAGAAGCTAAAAAGAATAATGTTGATGTAG 824
Query 847 TTATTATGGATACTGCAGGGAGGCTTCAGATAGATAAAGGCATGATGGACGAATTAAAAG 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTATTATGGATACTGCAGGGAGGCTTCAGATAGATAAAGGCATGATGGACGAATTAAAAG 884
Query 907 ACGTGAAGAAATTTCTGAATCCAACAGAAGTGTTACTAGTTGTTGATGCCATGACTGGAC 966
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGTGAAGAGATTTCTGAATCCAACAGAAGTGTTACTAGTTGTTGATGCCATGACTGGAC 944
Query 967 AAGAAGCTGCAGCACTGGTGACGACATTCAATGTAGAGATAGGAATTACAGGAGCCATTT 1026
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 945 AAGAAGCTGCAGCACTGGTGACTACATTCAATGTTGAGATAGGAATCACAGGAGCCATTT 1004
Query 1027 TGACAAAGCTAGATGGTGATTCAAGAGGTGGTGCTGCTTTGAGTGTCAAGGAGGTATCAG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1005 TGACAAAGCTAGATGGTGATTCAAGAGGTGGTGCTGCTTTGAGTGTCAAGGAGGTATCGG 1064
Query 1087 GAAAACCGATTAAACTGGTAGGACGTGGAGAGCGAATGGAGGATCTTGAACCCTTTTATC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GAAAACCGATTAAACTGGTAGGACGTGGAGAGCGAATGGAGGATCTTGAACCCTTTTATC 1124
Query 1147 CAGATCGAATGGCTGGACGAATTCTAGGAATGGGAGATGTGCTTTCATTTGTAGAGAAGG 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 CAGATCGAATGGCTGGACGAATTCTAGGAATGGGAGATGTGCTTTCATTTGTAGAGAAGG 1184
Query 1207 CAACAGAAGTTATGCGTCAAGAAGATGCAGAAGATCTGCAGAAGAAGATAATGAGTGCAA 1266
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1185 CAACAGAAGTTATGCGTCAAGAAGATGCTGAAGATCTACAGAAGAAGATAATGAGTGCAA 1244
Query 1267 AGTTCGACTTCAACGATTTTCTAAAGCAGACTCGTGCTGTAGCGAAAATGGGTTCGATGA 1326
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1245 AGTTCGACTTCAACGATTTCCTAAAGCAGACTCGTGCTGTTGCGAAAATGGGTTCGATGA 1304
Query 1327 CACGAGTTCTTGGAATGATTCCCGGAATGGGGAAAGTGAGTCCAGCACAAATCCGAGAAG 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CACGAGTTCTTGGAATGATTCCCGGAATGGGGAAAGTGAGTCCAGCACAAATCCGAGAAG 1364
Query 1387 CGGAAAAGAATCTTTTAGTCATGGAAGCAATGATTGAAGTGATGACACCCGAGGAAAGAG 1446
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1365 CGGAAAAGAATCTTTTAGTCATGGAAGCAATGATTGAAGTGATGACACCCGAGGAAAGGG 1424
Query 1447 AGAGACCAGAGTTACTAGCAGAATCTCCAGAGAGAAGAAAAAGAATCGCTAAAGATTCAG 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AGAGACCAGAGTTACTAGCAGAATCTCCAGAGAGAAGAAAAAGAATCGCTAAAGATTCAG 1484
Query 1507 GAAAGACAGAACAACAGGTGAGCGCACTTGTAGCACAAATCTTCCAAATGAGAGTGAAAA 1566
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1485 GAAAGACAGAACAGCAGGTGAGTGCACTTGTAGCACAAATCTTCCAAATGAGAGTAAAAA 1544
Query 1567 TGAAGAACTTGATGGGAGTGATGGAAGGAGGATCAATTCCAGCATTAAGCGGTCTCGAGG 1626
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1545 TGAAGAACTTGATGGGAGTAATGGAAGGAGGATCAATTCCTGCATTAAGCGGTCTCGAGG 1604
Query 1627 ACGCATTGAAAGCAGAACAAAAGGCTCCACCTGGAACTGCAAGGAGGAAGAGAAAGGCAG 1686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1605 ACGCATTGAAAGCAGAACAAAAGGCTCCACCTGGAACTGCAAGGAGGAAGAGAAAGGCGG 1664
Query 1687 ACTCAAGGAAGAAATTTGTAGAGTCAGCATCAAGCAAGCCTGGTCCTCGTGGCTTCGGCT 1746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ACTCAAGGAAGAAATTTGTAGAGTCAGCATCAAGCAAGCCTGGTCCTCGTGGCTTCGGCT 1724
Query 1747 CTGGTAACTAAAACTATTTCAGCCCAATTTGGTTAATTTCTAAACGGATTAtttttttGT 1806
||||||||||||| |||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 1725 CTGGTAACTAAAATTATTTCAGTCCAGTTTGGTTAATTTCAAAACGGATTATTTTTTTGT 1784
Query 1807 ATAAGTTAATGAATGAGA 1824
| ||||||||||||||||
Sbjct 1785 ACAAGTTAATGAATGAGA 1802
> Ahg924584 jgi|Araly1|924584|scaffold_200145.1
Length=612
Score = 364 bits (197), Expect = 1e-99
Identities = 221/233 (95%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 519 ATTGTACATGATGAGCTAGTGAAATTGATGGGTGGAGAAGTATCTGAGTTACAGTTTGCT 578
||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 318 ATTTTACATGATGAGCTTGTGAAATTGATGGGTGGAGAAGTATCTGAGCTACAGTTTGCT 377
Query 579 AAATCAGGTCCTACAGTAATATTGTTGGCTGGGCTCCAAGGAGTTGGAAAGACAACGGTT 638
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 378 AAATCAGGTCCTACGGTAATATTATTGGCTGGACTCCAAGGAGTTGGAAAGACAATGGTT 437
Query 639 TGTGCTAAACTAGCTTGTTACCTAAAGAAGCAGGGAAAATCTTGCATGCTTATTGCTGGA 698
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TGCGCTAAACTAGCTTGTTACCTAAAGAAGCAGGGAAAATCTTGCATGCTTATTGCTGGA 497
Query 699 GATGTATACCGACCTGCTGCTATCGATCAACTTGTCATTTTAGGTGAACAGGT 751
||||| |||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 498 GATGTGTACCGACCTGCTACCATTGATCAACTTGTCATTTTAGGTGAACAGGT 550
Score = 333 bits (180), Expect = 3e-90
Identities = 242/270 (90%), Gaps = 12/270 (4%)
Strand=Plus/Plus
Query 147 AGCTCTGCGTTCACCGGTGGCACCATCAATTCAGCTTCTCTGTCCTCCTCTAGGAATCTC 206
|||||||| ||||||||| |||| |||||||||||||| | |||||||||||||| |
Sbjct 60 AGCTCTGCATTCACCGGT---ACCAGCAATTCAGCTTCTC--T-CTCCTCTAGGAATCCC 113
Query 207 TCCACGCGAGAGATATGGAGTTGGGTGAAATCGAAGACTGTTGTTGGCCATGGAAGATAC 266
|| ||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 114 TCAACGCGAGAGATATGGAGTTGGGTGAAATCGAAGAC---TGTTGGTCAAGGAAGATAC 170
Query 267 AGAAGAAGCCAAGTGAGAGCCGAGATGTTTGGTCAGTTGACTGGTGGCCTCGAGGCTGCT 326
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 171 AGAAGAAGCCAAGTGAGAGCCGAGATGTTTGGACAGTTGACTGGTGGACTCGAGGCTGCT 230
Query 327 TGGAGCAAACTCAAAGGCGAAGAGGTCTTGACTAAGGACAATATTGCTGAGCCAATGCGG 386
|||||||||||||||||||||| | ||||| ||||| |||||||| || ||||||||
Sbjct 231 TGGAGCAAACTCAAAGGCGAAGT--T-TTGACCAAGGAGAATATTGCCGAACCAATGCGA 287
Query 387 GATATCAGAAGAGCTCTCCTGGAAGCAGAT 416
||||| |||||||||||||||||||||||
Sbjct 288 GATATTGGAAGAGCTCTCCTGGAAGCAGAT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70924036190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5