BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03960.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487175 jgi|Araly1|487175|fgenesh2_kg.6__309__AT5G03960.1 1927 0.0
Ahg910058 jgi|Araly1|910058|Al_scaffold_0001_312 617 5e-176
Ahg918940 jgi|Araly1|918940|scaffold_100221.1 520 1e-146
Ahg924585 jgi|Araly1|924585|scaffold_200146.1 289 4e-77
> Ahg487175 jgi|Araly1|487175|fgenesh2_kg.6__309__AT5G03960.1
Length=1317
Score = 1927 bits (1043), Expect = 0.0
Identities = 1218/1304 (93%), Gaps = 5/1304 (0%)
Strand=Plus/Plus
Query 16 TCTTTCTTCCTGATTCTCATCATTTGGTTTGTGTTCGTTCA-TAGAGAACTCCATCTAAT 74
|||||||||||||||||||||||||||||| | || ||| | |||||||| ||||||||
Sbjct 2 TCTTTCTTCCTGATTCTCATCATTTGGTTTTTATTTGTT-ACCAGAGAACTTCATCTAAT 60
Query 75 GGCGAAGAGGAGGTCGTGGTTCGGTTGGATGAAAAGACTATTCATCTGCGAGGCCAAAGC 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGCGAAGAGGAGGTCGTGGTTCGGTTGGATGAAAAGACTATTCATCTGCGAGGCGAAAGC 120
Query 135 AAGAGCAGAGAAGCCAAGGAGATTGAGATGGGTGTTTAAAAGGCTGAAGCTGAGACCGCA 194
|| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 AAAACCAGAGAAGCCAAGGAGATTGAGATGGGTGTTTAGAAGGCTGAAGCTGAGACCGCA 180
Query 195 GCTTGCCACTTGTGGGCAAGAGACAAGGACTTTGAACGAAGCAACACAGGATCAGAGGAA 254
| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 181 GATTGCAACTTATGGGCAAGAGACACGGACTTTGAACGAAGCAACACAGGATCAGAGAAA 240
Query 255 ACATGCAATGAATGTAGCCATTGCCACGGCTGCAGCAGCTGAGGCAGCGGTTGCAGCCGC 314
|||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 241 ACATGCCATGAATGTAGCCATTGCCACAGCTGCAGCAGCAGAGGCGGCGGTTGCAGCCGC 300
Query 315 CAAGGCAGCTGCTGAGGTTGTCCGGATGGCGGGAAACGCCTTCACATCACAACATTTTGT 374
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TAAGGCAGCTGCTGAAGTTGTCCGGATGGCGGGAAACGCCTTCACGTCACAACATTTTGT 360
Query 375 CAAGAAGCTCGCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTCTCT 434
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CAAGAAACTCGCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTATCT 420
Query 435 GGCCAGGAAAGCGTTGCGGGCGCTTAAGGCACTTGTAAGGCTTCAAGCAATTGTGCGTGG 494
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 421 GGCCAGGAAAGCGTTGCGGGCGCTAAAGGCACTCGTAAGGCTTCAAGCAATTGTGCGTGG 480
Query 495 CCGAGCTGTTAGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACACTCCAACAAAGCTTC 554
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 481 CCGAGCTGTTAGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACTCACCAACAAAGCTTC 540
Query 555 AACATCAAACATCATCCAGAGACAA-ACAGAGAGAAAGCATTGGTCCAATACCAAATCTG 613
|| ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 541 AAGATCAAGCATCATCCAGAGA-AACACAGAGAGAAAGCATTGGTCCAAGACCAAATCTG 599
Query 614 AGATCAAAGAGGAGCTTCAGGTATCGAACCATTCGCTGTGTAACTCAAAGGTGAAGTGCA 673
|||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |||||||
Sbjct 600 AGATCAAAGAAGAGCTTCAGGTATCGCACCATTCGATGTGTAACTCGAAGGTCAAGTGCA 659
Query 674 ATGGTTGGGACAGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGC 733
|||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||
Sbjct 660 ATGGTTGGGACAGTAGCGCTCTCACAAATGAAGACATGAAAGCCATATGGTTGAGGAAGC 719
Query 734 AAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAA 793
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 720 AAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGCTCTCATCGGGAGAGAA 779
Query 794 GAAGTCCTCATATGCTTGTGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTC 853
||||||||||||||||| ||||||| ||||| |||| |||||||||||| |||||||||
Sbjct 780 GAAGTCCTCATATGCTTATGGAGTCGTTGTACACTAAAGATATGGGGATGCGAAGCTGTC 839
Query 854 GGCTGGAACATTGGGGTGAATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAA 913
|||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 840 GGCTAGAACATTGGGGTGGATCCAAGTCTGCAAAATCCATAAACTCATTTCTCATTCCAA 899
Query 914 GTGAAATGCTTGTCCCTACAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTG 973
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 900 GTGAAATGCTTGTCCCTACAAAAGTGAAGCTCAGAACTTTGCAGAGACAAGACTCTGGTG 959
Query 974 ATGGACAAGACTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTA 1033
||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 960 ATGGACAAGACTCTCCATTTTCTTTCCCAAGGAGATCATTCAGCCGTCTGGAACAGAGTT 1019
Query 1034 TATTGGAAGACGAGAGCTGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGA 1093
|||| || |||||||||||| ||| ||| ||||| ||||||| || ||||||||| |||
Sbjct 1020 TATTAGAGGACGAGAGCTGGATTCCAAGCTCCAACAGTTTCCAACCTTACATGAGTATGA 1079
Query 1094 CAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCA 1153
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1080 CAGAGTCTGCAAGGGAAAAGATGAGATCACTAAGCACACCAAGGCAACGTGTAGGGCTGA 1139
Query 1154 TGGATTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGTCTCTCTCTGGTCTACTT 1213
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1140 TGGACTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGGATCTCTCTGGTCTTCTT 1199
Query 1214 TTGTCTGCGAAAATAGTAAGATCAACAACGCTAAGAAGTCGTCTCTGACCACATATCAAC 1273
||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 TTGTCTGTGAAAATAGTAAGAACAACAACGCTAAGAAGTCGTCCCTGACCACATATCAAC 1259
Query 1274 ATAATTGTTGAATCTTGAACATTCATGTCACTTTATTTCTTTGG 1317
||||||||| |||||||||||||||||||| ||| ||| |||||
Sbjct 1260 ATAATTGTTAAATCTTGAACATTCATGTCATTTTGTTT-TTTGG 1302
> Ahg910058 jgi|Araly1|910058|Al_scaffold_0001_312
Length=555
Score = 617 bits (334), Expect = 5e-176
Identities = 453/505 (90%), Gaps = 29/505 (6%)
Strand=Plus/Plus
Query 692 CTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 751
||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5 CTCTCACAAATGAAGACATAAAAGCCACATGGTTGAGGAAGCAAGAAGGTGTGATCAAGC 64
Query 752 GCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAAGAAGTCCTCATATGCTTG 811
| ||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||
Sbjct 65 GTGATCGTATGTTGAAATACTTCCGCTCTCATCGGGAGAGAAGAAATCCTCATATGCTTC 124
Query 812 TGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTG 871
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TGGAGTCATTGTACACTAAGGATATGGGGATGAGAAGCTGTCGGCTGGAACATTGGGGTA 184
Query 872 AATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAAGTGAAATGCTTGTCCCTA 931
|||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 185 AATCCAAGTCTGCAAAATCCATAAACTCATTTCTCATTCC------AA-G--TG------ 229
Query 932 CAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTGATGGACAAGA-CTCTCCA 990
||| | |||| | || | | | | || ||||||||||||||||||| |||||||
Sbjct 230 --AAA-T---GCTT-G-TCCCT--ACA-A-AA-ACTCTGGTGATGGACAAGATCTCTCCA 276
Query 991 TTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTATATTGGAAGACGAGAGC 1050
||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 277 TTTTCTTACCCGAGGAGATCTTTCAGCCGTTTGGAGCAGAGTCTATTGGAAGACGAGAGC 336
Query 1051 TGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGACAGAGTCTGCAAGGGAA 1110
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 337 TGGTTTCAAAGCTCCAATGGTTTCCAGCCTTACATGAGTGTGACAGAGTCTGCAAGGGAA 396
Query 1111 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCATGGATTCTTTGTTTGAT 1170
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 397 AAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGAT 456
Query 1171 AACTACAAGAAGGATGGGGATAAAG 1195
|||||||||||||||||||||||||
Sbjct 457 AACTACAAGAAGGATGGGGATAAAG 481
> Ahg918940 jgi|Araly1|918940|scaffold_100221.1
Length=625
Score = 520 bits (281), Expect = 1e-146
Identities = 325/347 (94%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 385 GCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTCTCTGGCCAGGAAA 444
||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct 96 GCTCCCAATGTGGCTGCTATCAAGATTCAGAGTTCCTTCAGGGCTTATCTAGCCAGGAAA 155
Query 445 GCGTTGCGGGCGCTTAAGGCACTTGTAAGGCTTCAAGCAATTGTGCGTGGCCGAGCTGTT 504
||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 156 GCGTTGCGGGCGCGGAAGGCATTTGGAAGGCTTCAAGCAATTGTGCGTGGCCGAGCTGTT 215
Query 505 AGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACACTCCAACAAAGCTTCAACATCAAAC 564
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 216 AGGCGAAAGGTTTCTGCTTTATTGAAGTCTACACTCTCCAACAAAGCTTCAACATCAAGC 275
Query 565 ATCATCCAGAGACAAACAGAGAGAAAGCATTGGTCCAATACCAAATCTGAGATCAAAGAG 624
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 276 ATCATCCAGAGACAAACAGAGAGAAAGCATTGGTCCAAGACCAAATCTGAGATCAAAGAA 335
Query 625 GAGCTTCAGGTATCGAACCATTCGCTGTGTAACTCAAAGGTGAAGTGCAATGGTTGGGAC 684
||||||||||| |||||||||| | || ||||||||||||| ||||||||||||||||||
Sbjct 336 GAGCTTCAGGTCTCGAACCATTAGATGAGTAACTCAAAGGTCAAGTGCAATGGTTGGGAC 395
Query 685 AGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAA 731
||||| |||||||| |||||||| |||||||||| ||||||||||||
Sbjct 396 AGTAGCGCTCTCACAAAGGAAGACATAAAAGCCACATGGTTGAGGAA 442
Score = 257 bits (139), Expect = 1e-67
Identities = 160/170 (94%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 962 AAGACTCTGGTGATGGACAAGA-CTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGCCGT 1020
|||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||
Sbjct 456 AAGACTCTGGTGATGGACAAGATCTCTCCATTATCTTTCCCGAGGGGATCTTTCAGCCGT 515
Query 1021 TTGGAGCAGAGTATATTGGAAGACGAGAGCTGGTTTCAAAGATCCAATGGTTTCCAGCCG 1080
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 516 TTGGAGCAGAGTCTATTGGAAGACGAGAGCTGGTTTCAAAGCTCCAATGGTTTCCAGCCT 575
Query 1081 TACATGAGTGTGACAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCAC 1130
| |||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 576 TGCATGAGTGTGACAGGGTCTGCAAGGTAAAAGATGAGATCACTGAGCAC 625
> Ahg924585 jgi|Araly1|924585|scaffold_200146.1
Length=217
Score = 289 bits (156), Expect = 4e-77
Identities = 187/202 (93%), Gaps = 1/202 (0%)
Strand=Plus/Plus
Query 1080 GTACATGAGTGTGACAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCACACCAAGGCA 1139
|||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 17 GTACATGAGTATGACAGAGTCTGCAAGGGAAAAGATGAGATCACTAAGCACACCGAGGCA 76
Query 1140 ACGTGTAGGGATCATGGATTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGTCTC 1199
| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 77 ATGTGTAGGGCTCATGGACTCTTTGTTTGATAACTACAACAAGGATGGGGATAAAGTCTC 136
Query 1200 TCTCTGGTCTACTTTTGTCTGCGAAAATAGTAAGATCAACAACGCTAAGAAGTCGTCTCT 1259
|| |||||| |||||||||| |||| |||||||| |||||||||||| |||||||||||
Sbjct 137 TCAATGGTCTTCTTTTGTCTGTGAAA-TAGTAAGAACAACAACGCTAAAAAGTCGTCTCT 195
Query 1260 GACCACATATCAACATAATTGT 1281
|||||||| |||||||||||||
Sbjct 196 GACCACATTTCAACATAATTGT 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5