BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03970.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487176 jgi|Araly1|487176|fgenesh2_kg.6__310__AT5G03970.1 1245 0.0
> Ahg487176 jgi|Araly1|487176|fgenesh2_kg.6__310__AT5G03970.1
Length=1233
Score = 1245 bits (674), Expect = 0.0
Identities = 806/870 (93%), Gaps = 8/870 (1%)
Strand=Plus/Plus
Query 31 TTCAGCGTTCGTCGTCACCAAGTGTCTGCAATGTCTTGTTCTGCCAGGTTAAAAACCAAT 90
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 TTCAGCGTTCGTCGTCATCAAGTGTCTGCAATGTCTTGTTCTGCCAGGTTAAAAACCAGT 60
Query 91 TTGGGGATGACTTCTGCTCTGAGTACTCATGAGGTTCTTAACAGTAATGATACTATGTGT 150
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TTGGGGATGACTTCTGCTTTGAGTGCTCATGAGGTTCTTAACAGTAATGATACTATGTGT 120
Query 151 GAGATTCTTATCCTGCTTCCACCAGAAACGATATACAAGCTGATTTTGGTGTCCAAGAGA 210
||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 GAGATTCTTCTCCTGCTTCCACCAGAAACAATCTACAAGCTGATTTTGGTGTCCAAGAGG 180
Query 211 TGGCTTGAGATTATAGCCAGCCCTTGCTTCCGTCACACTTACTTAGCCAAGTGGAAACCT 270
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 181 TGGCTTCAGATTATAGCCAGCCCTTACTTCCGTCACACTTACTTAGCCAAGTGGAACCCT 240
Query 271 AATTTTGAACTCATTGGCTTCTTCGTCTGCAGCTCAATGTACCTTGGAAGACGCATAGAT 330
| |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||
Sbjct 241 AGCTTTGAACTCATTGGCTTCCTCGTCTGTAGCTCAACGTACCTTGGAAGACGCGTAGAT 300
Query 331 GGAACTCGTCGCCCTCGCGCTGAGCCATCTCTTCCTTTGCTCTCAACCAGCAGTATTGGT 390
||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 301 GGAGCCCGTCGCCCTCGTGCTGAGCCATCGCTTCCTTTACTCTCAACCAGCAGTATTGGT 360
Query 391 GATGAAATTGAATCCTCTGGTATTCTGAAAAAGCTTGGATACTACATCGACTCTGCAGAT 450
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 361 GATGAAATTGAATCCTCTGGCATTCTGAAAAAACTTGGATACTACATCGACTCTTCAGAC 420
Query 451 GGTCTTCTACTCTGCGGCCGCCATCCAAAAGCTTACTACTTGTGGGATCCGAGTACACAG 510
|||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GGTCTTTTACTTTGTGGCCGCCATCCAAAAGCTTACTACTTGTGGGATCCAAGTACACAG 480
Query 511 AAGCAGCAGCAACTTCCACGTCCCAGAGTTCATTTCGAAGAACTTTGTATGTCTTTGATT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAGCAGCAGCAACTTCCACGTCCCAGAGTTCATTTCGAAGAACTTTGTATGTCTTTGATT 540
Query 571 TCTGAGGATAGTCCTGATCAAGGGTTTAGCTACAAGGTGGTCCGGGCAGAGTGTGTAGCC 630
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||| |
Sbjct 541 ACTGAGGATTGTCCTGATAAAGGGTTTAGCTACAAGGTGATCCGGGCAGAGAGTGTAGGC 600
Query 631 TTTCCTGTT-AACAGTACAAAGGTGAAGGTAGAGACTTTTTCCTCAAAAACTTCTACGTG 689
||| ||| | || ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 601 TTTACTGCTCAA-AGTACAAAGTTGAAGGTAGAGACTTTTTCCTCGAAAACTTCTACGTG 659
Query 690 GAGCTACTCAGAGCTTATTTGTC-TCGAGCCTCTATCTCTCAGCCCGTGGACTCCAGGGA 748
||||||||||||||||| ||||| | |||||| |||||||||| |||||||||| || |
Sbjct 660 GAGCTACTCAGAGCTTACTTGTCCT-GAGCCTATATCTCTCAGTCCGTGGACTCTTGGTA 718
Query 749 GAGTGATTAAAGGCGTTGTTTATTGGCATGCTAGAGGAGGTAAAATTGCCATATATGACT 808
||||||| ||||| |||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct 719 GAGTGATCAAAGGTGTTGTTTACTGGCATGCCAGAGGAGGTAAAGTTGCCATGTATGACT 778
Query 809 CAAACAGTGAGGAGAAACG-GATTGATGTGATAAAGCTTCCGAAAACATATGACTATGAT 867
||||||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||
Sbjct 779 CAAACAGTGAGGAGAAACGTG-TGGATATGATAAAGCTTCCGAAAACATATGATTATGAT 837
Query 868 GAACAGGTTCTGGGAGAAACCGAT-GATGG 896
|||||||||||||| |||||| || |||||
Sbjct 838 GAACAGGTTCTGGGCGAAACC-ATTGATGG 866
Score = 451 bits (244), Expect = 6e-126
Identities = 301/329 (91%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 1049 GGACTAAAGAAACGCAGCTGCTTGCGCTCTTCAATCAGAAGTCGGACTTGGTGTACATCA 1108
||||||||||||| |||||||||||| || |||||||||||||||||| ||| | |||||
Sbjct 872 GGACTAAAGAAACACAGCTGCTTGCGTTCCTCAATCAGAAGTCGGACTCGGTTTTCATCA 931
Query 1109 GATGTGATACACAAATCTTCATCTATCACACAGAGACTAAAAGGGTCGAAGTAGTTCAGT 1168
| ||||| || || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 932 GGTGTGAAACCCACATCTTCATCTATGACACAGAGACTAAAAGGGTCGAAGTAGTTCAGT 991
Query 1169 ACCAAGGACGAAAATCGACACTCGTTTGGGATTTCAACAAAGTGGTGCCTTACTTTCGAC 1228
|||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||
Sbjct 992 ACCAAGGACGAAAATCAACATTCGTTTGGGATTACTGCAAAGTCGTGCCTTACTTTCGAC 1051
Query 1229 GTACCTGGCCTTGTTCTCCTCTGTTTGAAAACAATGCCATGATGATCGACACTCCTCAAT 1288
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1052 GTACCTGGCCTTCTTCTCCTCTGTTTGAAAACAATGTCATGATGATCGACACTCCTCAAT 1111
Query 1289 GCAACGCCTCTTCCGCAGGAAGTAACTAAGTAGTTTATGCTTTTAATCAGTTTATGTATG 1348
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |
Sbjct 1112 GCAACGCCTCTTCTGCAGGAAGTAACTAAGTAGTTTACGCTATTAATCAGTTTTTGT--G 1169
Query 1349 TAGGCTATTCAACTATCTTTTATGTTTTG 1377
||||| ||| ||||||| |||||||||||
Sbjct 1170 TAGGCCATTGAACTATCGTTTATGTTTTG 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5