BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03980.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487178 jgi|Araly1|487178|fgenesh2_kg.6__312__AT5G03980.1 1465 0.0
Ahg939850 jgi|Araly1|939850|scaffold_600394.1 551 4e-156
> Ahg487178 jgi|Araly1|487178|fgenesh2_kg.6__312__AT5G03980.1
Length=961
Score = 1465 bits (793), Expect = 0.0
Identities = 905/961 (94%), Gaps = 0/961 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACGACCAAAGCATTATCGCTTCTTGTGTTTATACTCTTCGTGTCCCTTGTTCAT 60
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGTCTACGACCAAAGCACTATCGCTTCTTGTGTTTTTACTCTTCGTGTCCCTTGTTCAC 60
Query 61 TCATCGGATCAATGTCCTATCAACTCTATCTACCAATTCGGTGACTCCATCTCCGACACT 120
|||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 GCATCGGATCAATGTCCGATCAACTCCATCTACCAATTCGGTGACTCCATAGCCGACACC 120
Query 121 GGAAACTTAATCCGCAACGGCCCTGCTTCATCTCCCACTCCTAAACCCTTACCTCAACGG 180
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GGAAACTTAATCCGTAATGGCCCTGCTTCATCTCCCACTCTTAAACCCTTACCTCAACGG 180
Query 181 GAACACAACGTCTTTGTTAACTTCGGAGTTTCCGGAAGCACAGCACTCAACAGCTCTTTC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AAACACAACGTCTTTGTTAACTTCGCCGTTTCCGGAAGCACAGCACTCAACAGCTCTTTC 240
Query 241 TTCTCCGAGAGAAATCTCCACGTTCCGGCAACAAACACTCCTCTCTCCATGCAGCTTGCT 300
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTCGCCGAGAGAAATCTCCACGTTCCGGCAACAAACACTCCTCTCTCCACACAGCTTGCT 300
Query 301 TGGTTCAAGGGTCATCTACGTTCCACGTGTCACGGCTCTTCTTCGGATTGCTTGAAGCAC 360
||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 301 TGGTTCAAGTCTCATCTACGTTCCACATGTCATGGCTCGTCTTCGGATTGCTTGAAGCAG 360
Query 361 TCTCTTTTCATGGTCGGTGAGATAGGAGGCAACGACTACAACTACGGTTTCTTCCAAGGC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCTCTTCATGGTCGGTGAGATAGGAGGCAACGACTACAACTACGGTTTCTTCCAAGGC 420
Query 421 AAACCAATGGAAGAAATCAGAAGCTACATCCCTCACGTGGTTGGAGCCATCACAGCCGCA 480
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 421 AAACCCATGGAAGAAATCAGAAGCTATATCCCTCATGTTGTTGGCGCCATCACAGCCGCG 480
Query 481 GCTAGAGAGGTGATCCGTGCTGGTGCGGTTAACGTGGTCGTCCCGGGAAACTTTCCAGTG 540
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGAGAAGTAATCCGTGCCGGTGCAGTTAACGTGGTCGTCCCGGGAAACTTTCCAGTG 540
Query 541 GGATGTTTTCCGATTTACTTGACGTCTTTTCCCGTGAAAGATACAAAAGATTACGACGAC 600
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 541 GGATGTTTTCCGATTTACTTGACGTCTTTTCCCGTGAAAGATCCAAAAGCTTACGACGAC 600
Query 601 AACGGTTGCTTGACGCATCTCAACGAATTCGCAATGGATCACAATAACCAACTCCAAGAA 660
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 601 AAAGGTTGCTTGAAGCATCTCAACGAATTCGCAATGGATCACAATAACCAACTGCAAGGA 660
Query 661 GCTATAGCTTCTTTGAGAAAAGAGTTTCCAGACGTGGCTATAGTATACGGAGATTACTAC 720
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 661 GCTATAGCTTCTTTGAGAAAAGAGTTTCCAGGTGTGGCTATAGTCTACGGAGATTACTAC 720
Query 721 AATGCGTTTCAATACGTTCTACGAAGTGAAAGATTCGACAAGAGTGTAGCTTTGAAATCG 780
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 721 AACGCGTTTCAATACGTTCTACGCAGTGAAAGATTCGACAAGAGTGTAGCATTGAAATCG 780
Query 781 TGTTGCGGGACCGGTGGAGCTTACAACTACGACGGAAAGAGGCCATACGGAGCAGTGGGA 840
|||||||||| ||| ||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 781 TGTTGCGGGATCGGCGGAGCTTACAACTACGACGGAAAGAGGCCTTGCGGAGCAGCGGGA 840
Query 841 GTTCCGGTGTGTCAGAATCCACACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAA 900
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGCCGGTGTGTCAGAATCCAAACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAA 900
Query 901 AAGGCTTATAGATTCATGTCTAAGTTCTTGAACAATCAGATTCTTTCACAGATCAAGTGT 960
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 901 AAGGCTTATAGATTCATGTCTAATTTCTTGAACTATCAGATTCTTTCACAGATCAAGTGT 960
Query 961 A 961
|
Sbjct 961 A 961
> Ahg939850 jgi|Araly1|939850|scaffold_600394.1
Length=381
Score = 551 bits (298), Expect = 4e-156
Identities = 338/358 (94%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 615 GCATCTCAACGAATTCGCAATGGATCACAATAACCAACTCCAAGAAGCTATAGCTTCTTT 674
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GCATCTCAACGAATTTGCAATGGATCACAATAACCAACTCCAAGAAGCTATAGCTTCTTT 63
Query 675 GAGAAAAGAGTTTCCAGACGTGGCTATAGTATACGGAGATTACTACAATGCGTTTCAATA 734
|||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct 64 GAGAAAAGAGTTTCCAGATGTGGCTATAGTCTACGGAGACTACTACAACACGTTTCAATA 123
Query 735 CGTTCTACGAAGTGAAAGATTCGACAAGAGTGTAGCTTTGAAATCGTGTTGCGGGACCGG 794
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 124 CGTTCTACGCAGTGAAGGATTCGACAAGAGTGTAGCTTTGAAATCGTGTTGCGGGGTCGG 183
Query 795 TGGAGCTTACAACTACGACGGAAAGAGGCCATACGGAGCAGTGGGAGTTCCGGTGTGTCA 854
|||||||||||||||||||||||||||||| | ||||| || ||||| |||||||||||
Sbjct 184 TGGAGCTTACAACTACGACGGAAAGAGGCCTTGCGGAGTAGCAGGAGTACCGGTGTGTCA 243
Query 855 GAATCCACACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAAAAGGCTTATAGATT 914
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GAATCCAGACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAAAAGGCTTATAGATT 303
Query 915 CATGTCTAAGTTCTTGAACAATCAGATTCTTTCACAGATCAAGTGTACTAGGGCTTAA 972
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 304 CATGTCTAAGCTCTTCAACTATCAGATTCTTTCACAGATCAAGTGTACTAGGGCTTAA 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5