BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03990.1 Length=1386 Score E Sequences producing significant alignments: (Bits) Value Ahg487179 jgi|Araly1|487179|fgenesh2_kg.6__313__AT5G03990.1 1075 0.0 > Ahg487179 jgi|Araly1|487179|fgenesh2_kg.6__313__AT5G03990.1 Length=1278 Score = 1075 bits (582), Expect = 0.0 Identities = 706/765 (92%), Gaps = 11/765 (1%) Strand=Plus/Plus Query 190 TCTCGTCGAAA-TTAGGGATTTTGTTCATT-AAATCTTCCTGATTTGGAAGGTATTTTCA 247 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 104 TCTCGTCGAAATTTAGGGATTTTGTTCATTAAAATCTTCCTGATTTGGAAGGTATTTTCA 163 Query 248 TTGTCTGC-T-TGaaaaaaaTTCAATCTTTGTCGGTTCATTATGAGTAATTGGAGAAGAC 305 |||||| | | || ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 164 TTGTCTTCTTCTGCAAAAAATTCAATCTTTGTCGGGTCATTATGAGTAATTGGAGAAGAC 223 Query 306 AAAAACCCAGAAACAACAAC-AGCAATAATTATAGTCGTCAACGA-GG--GACGACGATG 361 |||||||||||||||||||| | | ||||||||| | ||||||| || |||||||||| Sbjct 224 AAAAACCCAGAAACAACAACAATC-ATAATTATAACCATCAACGAGGGACGACGACGATG 282 Query 362 ACGCAATCATCATCAAAGCCACCTCTTGCTAATTGCAAGATCTCTGTTCCAGCGTGGGAG 421 ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 283 ACGCAATCAGCATCAAAGCCACCTCTTGCTAATTGCAAGCTCTCTGTTCCGGCGTGGGAG 342 Query 422 AAGGATTTTTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCCAAGCGG 481 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 343 AAGGATTTCTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCGAAGCGG 402 Query 482 TTTATGCACATATACGATAGAGTGGTCCAATGGGACGACTCAGCTGGTGAAGACGCATTC 541 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| Sbjct 403 TTTATGCACATATACGATAGAGTGGTCCAGTGGGACGACTCAGCGGGGGAAGACGCATTC 462 Query 542 AAGAACGCTAAATCTCGTTTCTGGGCAGAGATAAATGGT-TTAACTTGTGACTTATCTTT 600 |||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||| Sbjct 463 AAGAACGCTAAATCCCGGTTCTGGGCAGAGATAAATGGCCTTA-CTTGTGACTTATCTTT 521 Query 601 GCCTGATCCTGATGTTTACATTGATGATGTTGATTGGGATGCTGAAGTTGACAATGAGTT 660 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | Sbjct 522 GCCTGATCCTGATGTCTACATTGATGATGTTGATTGGGATGCTGAAGTTGACACCGAGCT 581 Query 661 GATACTTGACCTTGAACGTGGTCCAGACCCTTTAACAGAAGAACAAGAGCATGTTGTGAT 720 ||| |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| Sbjct 582 GATTCTTGACCTTGAACGTGGTCCAGACCCTTTAGCAGAAGAACAGGAGCATGTCGTGAT 641 Query 721 ACTCGATGCTTTGGTTTTATCTGGACAGTATGGCGGGCTTGGTTGGGGAACTGGTTGGGG 780 ||||||||||||||| || |||||||| ||| |||||||||||||||||| |||||||| Sbjct 642 ACTCGATGCTTTGGTCTTGTCTGGACAATATACCGGGCTTGGTTGGGGAACGGGTTGGGG 701 Query 781 TGACGCTGAAGGGATTAACGAGGAGAATGTTGGAAAGGGTAAACCAGAAAACTCATGGGG 840 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 702 AGACGCTGAAGGGATTAACGAGGAGAATGTTGGAACGGGTAAACCAGAAAACTCATGGGA 761 Query 841 TGATCAGAAATATGATGGATGGAATGAAGATTCTTGGGGGATAAAGGAGAAAACTGAAAC 900 | ||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct 762 TAATCAGAAATGTGATGGATGGAACGAAGATTCTTGGGGAATAAAAGAGAAAACTGAATG 821 Query 901 TTGGGATCATAACAACAACAACACCAACACTGATTCTTGGGATCA 945 |||||||||||||||||||||| ||| | || ||||||||||| Sbjct 822 TTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCA 866 Score = 612 bits (331), Expect = 2e-174 Identities = 427/470 (91%), Gaps = 20/470 (4%) Strand=Plus/Plus Query 929 ACTGATTCTTGGGATCAT---AACAACAACTTCAAAGCTGAAACTTGGGATCAGAA-AAA 984 ||||| | |||||||||| |||||||||||||| || ||| ||||||||||||| ||| Sbjct 814 ACTGAATGTTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCAGAAGAAA 873 Query 985 CTGCAACAACAACAGCTTCAACTACAAGAAGGTTGAGAATTGGAATGGTAGGGATCaagg 1044 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 874 -TGCAACAACAACAGCTTCAACCACAAGAAGGTTGAGAATTGGAATGGTAGGGATCAAGG 932 Query 1045 aagagagaacagagggtggagaaagagaggagaagggcgacatggaggagaacgagtgga 1104 |||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| Sbjct 933 AAGAGAGAGCAGAGGGTGGAGAAAGAGAGGAGAAGTTCAACATGGAGGAGATCGAGTGGA 992 Query 1105 ggaTTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAACATTCGGC 1164 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 993 GGATTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAGCATTCGTC 1052 Query 1165 GAATGCATGGGGTTGGACTGAATCCTTCTGAATCAGACACAGAGTCTCTCTTGATAAAAC 1224 |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| || Sbjct 1053 GAATGCTTGGGGTTGGACTGAATCCTTCTGAATCAGACAGAGAGTCTCTGTTGATAATAC 1112 Query 1225 ATTTTTTGAGGAAAGAGCTGTAGTATAGTAGGTTTAACTATATAgtgtgagtgtg-t-tc 1282 |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | | Sbjct 1113 ATTTTT-GAGGAAAGAGCTGTAGTATAGTAGGTT-AACTATATAGTGTGAGTGTGGTGTG 1170 Query 1283 c-gtgtgtgtgtgt-----T--AGAATCATACTGATGGCTCAAAATTATTTTGTCTAAAC 1334 |||||||||||| | ||||||||| |||||||||||||||||||||| |||| Sbjct 1171 GTGTGTGTGTGTGTAGAAGTTTAGAATCATATTGATGGCTCAAAATTATTTTGTTTAAAT 1230 Query 1335 GTTTCAGAGGATCTTATCACTTAAAATGATATGC-CTATATAAGTTTCTG 1383 ||||||||||||||||| ||||||| |||||||| | ||||||||||||| Sbjct 1231 GTTTCAGAGGATCTTATTACTTAAA-TGATATGCTC-ATATAAGTTTCTG 1278 Score = 102 bits (55), Expect = 6e-21 Identities = 65/69 (94%), Gaps = 4/69 (6%) Strand=Plus/Plus Query 92 TTGATTTTTCTTC-ACCTCATCTTCTTATAAA-TCATCTGTTTCGTTGCAGAGAGCTCTA 149 ||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||| Sbjct 37 TTGATTTTTCTTCAACC-CATCTTCTTATAAATTC-TCTGTTTCGTTGCAGAGAGCTCTA 94 Query 150 AAAGAAACA 158 ||||||||| Sbjct 95 AAAGAAACA 103 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51802733200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5