BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03990.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487179 jgi|Araly1|487179|fgenesh2_kg.6__313__AT5G03990.1 1075 0.0
> Ahg487179 jgi|Araly1|487179|fgenesh2_kg.6__313__AT5G03990.1
Length=1278
Score = 1075 bits (582), Expect = 0.0
Identities = 706/765 (92%), Gaps = 11/765 (1%)
Strand=Plus/Plus
Query 190 TCTCGTCGAAA-TTAGGGATTTTGTTCATT-AAATCTTCCTGATTTGGAAGGTATTTTCA 247
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 104 TCTCGTCGAAATTTAGGGATTTTGTTCATTAAAATCTTCCTGATTTGGAAGGTATTTTCA 163
Query 248 TTGTCTGC-T-TGaaaaaaaTTCAATCTTTGTCGGTTCATTATGAGTAATTGGAGAAGAC 305
|||||| | | || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 164 TTGTCTTCTTCTGCAAAAAATTCAATCTTTGTCGGGTCATTATGAGTAATTGGAGAAGAC 223
Query 306 AAAAACCCAGAAACAACAAC-AGCAATAATTATAGTCGTCAACGA-GG--GACGACGATG 361
|||||||||||||||||||| | | ||||||||| | ||||||| || ||||||||||
Sbjct 224 AAAAACCCAGAAACAACAACAATC-ATAATTATAACCATCAACGAGGGACGACGACGATG 282
Query 362 ACGCAATCATCATCAAAGCCACCTCTTGCTAATTGCAAGATCTCTGTTCCAGCGTGGGAG 421
||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 283 ACGCAATCAGCATCAAAGCCACCTCTTGCTAATTGCAAGCTCTCTGTTCCGGCGTGGGAG 342
Query 422 AAGGATTTTTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCCAAGCGG 481
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 343 AAGGATTTCTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCGAAGCGG 402
Query 482 TTTATGCACATATACGATAGAGTGGTCCAATGGGACGACTCAGCTGGTGAAGACGCATTC 541
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 403 TTTATGCACATATACGATAGAGTGGTCCAGTGGGACGACTCAGCGGGGGAAGACGCATTC 462
Query 542 AAGAACGCTAAATCTCGTTTCTGGGCAGAGATAAATGGT-TTAACTTGTGACTTATCTTT 600
|||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 463 AAGAACGCTAAATCCCGGTTCTGGGCAGAGATAAATGGCCTTA-CTTGTGACTTATCTTT 521
Query 601 GCCTGATCCTGATGTTTACATTGATGATGTTGATTGGGATGCTGAAGTTGACAATGAGTT 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 522 GCCTGATCCTGATGTCTACATTGATGATGTTGATTGGGATGCTGAAGTTGACACCGAGCT 581
Query 661 GATACTTGACCTTGAACGTGGTCCAGACCCTTTAACAGAAGAACAAGAGCATGTTGTGAT 720
||| |||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 582 GATTCTTGACCTTGAACGTGGTCCAGACCCTTTAGCAGAAGAACAGGAGCATGTCGTGAT 641
Query 721 ACTCGATGCTTTGGTTTTATCTGGACAGTATGGCGGGCTTGGTTGGGGAACTGGTTGGGG 780
||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||
Sbjct 642 ACTCGATGCTTTGGTCTTGTCTGGACAATATACCGGGCTTGGTTGGGGAACGGGTTGGGG 701
Query 781 TGACGCTGAAGGGATTAACGAGGAGAATGTTGGAAAGGGTAAACCAGAAAACTCATGGGG 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 702 AGACGCTGAAGGGATTAACGAGGAGAATGTTGGAACGGGTAAACCAGAAAACTCATGGGA 761
Query 841 TGATCAGAAATATGATGGATGGAATGAAGATTCTTGGGGGATAAAGGAGAAAACTGAAAC 900
| ||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 762 TAATCAGAAATGTGATGGATGGAACGAAGATTCTTGGGGAATAAAAGAGAAAACTGAATG 821
Query 901 TTGGGATCATAACAACAACAACACCAACACTGATTCTTGGGATCA 945
|||||||||||||||||||||| ||| | || |||||||||||
Sbjct 822 TTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCA 866
Score = 612 bits (331), Expect = 2e-174
Identities = 427/470 (91%), Gaps = 20/470 (4%)
Strand=Plus/Plus
Query 929 ACTGATTCTTGGGATCAT---AACAACAACTTCAAAGCTGAAACTTGGGATCAGAA-AAA 984
||||| | |||||||||| |||||||||||||| || ||| ||||||||||||| |||
Sbjct 814 ACTGAATGTTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCAGAAGAAA 873
Query 985 CTGCAACAACAACAGCTTCAACTACAAGAAGGTTGAGAATTGGAATGGTAGGGATCaagg 1044
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 874 -TGCAACAACAACAGCTTCAACCACAAGAAGGTTGAGAATTGGAATGGTAGGGATCAAGG 932
Query 1045 aagagagaacagagggtggagaaagagaggagaagggcgacatggaggagaacgagtgga 1104
|||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 933 AAGAGAGAGCAGAGGGTGGAGAAAGAGAGGAGAAGTTCAACATGGAGGAGATCGAGTGGA 992
Query 1105 ggaTTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAACATTCGGC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 993 GGATTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAGCATTCGTC 1052
Query 1165 GAATGCATGGGGTTGGACTGAATCCTTCTGAATCAGACACAGAGTCTCTCTTGATAAAAC 1224
|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1053 GAATGCTTGGGGTTGGACTGAATCCTTCTGAATCAGACAGAGAGTCTCTGTTGATAATAC 1112
Query 1225 ATTTTTTGAGGAAAGAGCTGTAGTATAGTAGGTTTAACTATATAgtgtgagtgtg-t-tc 1282
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1113 ATTTTT-GAGGAAAGAGCTGTAGTATAGTAGGTT-AACTATATAGTGTGAGTGTGGTGTG 1170
Query 1283 c-gtgtgtgtgtgt-----T--AGAATCATACTGATGGCTCAAAATTATTTTGTCTAAAC 1334
|||||||||||| | ||||||||| |||||||||||||||||||||| ||||
Sbjct 1171 GTGTGTGTGTGTGTAGAAGTTTAGAATCATATTGATGGCTCAAAATTATTTTGTTTAAAT 1230
Query 1335 GTTTCAGAGGATCTTATCACTTAAAATGATATGC-CTATATAAGTTTCTG 1383
||||||||||||||||| ||||||| |||||||| | |||||||||||||
Sbjct 1231 GTTTCAGAGGATCTTATTACTTAAA-TGATATGCTC-ATATAAGTTTCTG 1278
Score = 102 bits (55), Expect = 6e-21
Identities = 65/69 (94%), Gaps = 4/69 (6%)
Strand=Plus/Plus
Query 92 TTGATTTTTCTTC-ACCTCATCTTCTTATAAA-TCATCTGTTTCGTTGCAGAGAGCTCTA 149
||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 37 TTGATTTTTCTTCAACC-CATCTTCTTATAAATTC-TCTGTTTCGTTGCAGAGAGCTCTA 94
Query 150 AAAGAAACA 158
|||||||||
Sbjct 95 AAAGAAACA 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5