BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04000.2

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325049 jgi|Araly1|325049|fgenesh1_pm.C_scaffold_6000269           444    5e-124


> Ahg325049 jgi|Araly1|325049|fgenesh1_pm.C_scaffold_6000269
Length=369

 Score =  444 bits (240),  Expect = 5e-124
 Identities = 297/325 (91%), Gaps = 2/325 (1%)
 Strand=Plus/Plus

Query  171  GGTGCAGGTAAAGTAAAAGAGCCGAGGGTATTATCTCCGGGAGGGTCCAAGATCGAAGAG  230
            ||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||
Sbjct  46   GGTGCAGGTAAAGTAAAAGAGTCAAGGGTAATCTCTCCGGGAGGGTCCAAGATCGAAGAG  105

Query  231  AGGCAAAGTCACAGTGCTACTAATGAGAATGATATGAGTCAAGAT-GGTAGAGATCAGCC  289
            ||||||| |||| ||| ||||||||||||||| |||||||||| |  | |||||||||||
Sbjct  106  AGGCAAATTCACGGTGTTACTAATGAGAATGACATGAGTCAAGGTAAG-AGAGATCAGCC  164

Query  290  TCATGGTGAAGTGAACATGGAAGCTTCTATATCAGCAGAAGATGTGATAAGAGCTGGAGG  349
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  TCGTGGTGAAGTGAACATGGAAGCTTCTATATCAGCAGAAGATGTGATAAGAGCTGGAGG  224

Query  350  GTTTGGTGCTAAAGATGACATTGGAAGCTTCCTTCCTGTGGCGAGTGACTCGACTGACTT  409
              |||||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct  225  ACTTGGTGCTAAGGACGACATTGGAAGCTTCCTTCCCGTGGCAAGTGACTCCACTGACTT  284

Query  410  TGAGGAATCAATCCGATCTGCACGCGATTATGAAGAAGCGCAACCAGAGGTTCAAAGACC  469
            |||||||||| |||| || ||||| || ||||||||||||||||| ||||||||||||||
Sbjct  285  TGAGGAATCACTCCGCTCGGCACGTGACTATGAAGAAGCGCAACCGGAGGTTCAAAGACC  344

Query  470  GGGTCTTGGCTATCCGAAAGTGTAA  494
            ||||||||||||||| |||| ||||
Sbjct  345  GGGTCTTGGCTATCCTAAAGAGTAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28096589829


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5