BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04010.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487181 jgi|Araly1|487181|fgenesh2_kg.6__315__AT5G04010.1 1310 0.0
> Ahg487181 jgi|Araly1|487181|fgenesh2_kg.6__315__AT5G04010.1
Length=877
Score = 1310 bits (709), Expect = 0.0
Identities = 827/883 (94%), Gaps = 12/883 (1%)
Strand=Plus/Plus
Query 1 TTCCACATGTCCACATACGTGTCCTCTGTCTTC-TCTCTCGCCACCATGAAACAAAACCC 59
||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 1 TTCCACATGTCCACATACGTGTCATCTGTC-TCGTCTCTCGCCACCATGAAACAAAACCC 59
Query 60 TCTGAAGCGCAAACGCAACGATGAGATCACTGAAGAGAAAGTCGTACTACTCATGGCTAT 119
||||||||||||||||||||||||||||| |||||||| | ||| |||||||| ||||
Sbjct 60 TCTGAAGCGCAAACGCAACGATGAGATCAATGAAGAGACACTCG---TACTCATGACTAT 116
Query 120 GCACAAAGAAGACGACGAGCACCAACATACCAAACCGTCTCCACCATCTTGGGAGATTCT 179
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 117 GCACAAAGAAGACGACGAGCACGAACACACCAAACCGTCTCCACCATCTTGGGAGATTCT 176
Query 180 CTGCCTTGTTGGTCCTTACATGGACCCTGAGTCACTAGCCGTAGCCTCTTGCGTCTCCAC 239
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 177 CTGCCTTGTTGGTCCTTACATGGACCCTGAGTCTCTAGCCGTAGCCTCTTGCGTCTCCGC 236
Query 240 CACGTGGTCGAAGTGCTTCTCCTCGGAAGATCTATGGAAGTC-TCTACCAGCCACACGAC 298
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 237 CACGTGGTCGAAGTGCTTCTCCTCGGAAGATCTATGGAAG-CTTCTACCAGCCACACGTC 295
Query 299 ATTCTATATTC-GCTAAAGCCATCACCAAGGAGG---GAGCTAAGCCCGCCTGGTTATCG 354
||||||||||| | ||||||||||||||||||| | |||| || ||||||||||||
Sbjct 296 ATTCTATATTCTAC-AAAGCCATCACCAAGGAGGAAACAACTAAACCGGCCTGGTTATCG 354
Query 355 TACAAGCGTCTAATCTCTGAAGCAGAATCTGCAGCAAAACGCCGCCGCAACAACCAACCC 414
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 TACAAGCGCCTTATCTCTGAAGCTGAATCTGCAGCAAAACGCCGCCGCAACAACCAACCC 414
Query 415 GCGGAGCCAAAGATCTCTCTCTCCGATCTTGTTTTCATCGTCCACGTGTCAGCTGGATCA 474
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 415 GCGGAGCCAAAGATCTCTCTCTCCGATCTCGTTTTCATCGTCCACGTGTCAGCTGGATCA 474
Query 475 AAAGAAGCAGTGGTTGTGAAACAGGGGAAGGATCTTGTGTTTGGCTCGAACGAGCGGTTC 534
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 475 AAGGAAGCAGTGGTTGTGAAACAGGGGAAGGATCTTATGTTTGGCTCGAACGAGCGGTTC 534
Query 535 CAAATCGAAGCTGATGTCCGCGACTCGGGATTCACCGCCGATATGAAAGACGTGAGCATG 594
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAAATCGAAGCTGATGTCAGCGACTCGGGATTCACCGCCGATATGAAAGACGTGAGCATG 594
Query 595 TCGTGGAACGTCGTGTTAAGGAATTACGAAAGAATGTTTCTAATGTCGGAGACTGTTATA 654
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
Sbjct 595 TCGTGGAACGTCGTGTTAAGGAATTATGAAAGAATGTTTCTAATATCGGAGAGTGTTAAA 654
Query 655 AAGTCATTAGATTCTATGATTGGATGGTTCACCGATGAACTTCCGGGGACAAAGAACCGT 714
|||||| ||||||||| |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 655 AAGTCACTAGATTCTAAGATTGGATGGTTCACCGACGAACTTCCGGCGACAAAGAACCGC 714
Query 715 TACTGTGACGGTAGCAACCTGGTGGGAGAAGTCAAGCCAAGTTTTAATGAAGATGTTCTT 774
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 715 TACTGTGACGGCAGCAACCTGGTGGGCGAAGTGAAGCCAAGTTTTAATGAAGAGGTTCTT 774
Query 775 GATAAAGTCGTGTTCGCTATTGCAGATTCACGCAACTGGAAGTCTCTGTTCGTTGACGAT 834
||||||||||| ||||| || ||||||||||| |||||||| |||||||| |||||||||
Sbjct 775 GATAAAGTCGTATTCGCGATAGCAGATTCACGTAACTGGAAATCTCTGTTTGTTGACGAT 834
Query 835 GTCTTGAGATATCTCCAATGTTTTCTTGTCGACTAATAGTTTT 877
||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 835 GTCTTGAGATATCTCCAATGTTTTCTTATCGAGTAAAAGTTTT 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5