BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04020.1
Length=4780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487182 jgi|Araly1|487182|fgenesh2_kg.6__316__AT5G04020.1 3786 0.0
> Ahg487182 jgi|Araly1|487182|fgenesh2_kg.6__316__AT5G04020.1
Length=4452
Score = 3786 bits (2050), Expect = 0.0
Identities = 2413/2585 (93%), Gaps = 37/2585 (1%)
Strand=Plus/Plus
Query 2002 GAAGAGAACGAAACAGTGAACT--C--AC-C-AACGATCTGGAGAGACAATGAAGACACT 2055
||||| |||||||||||||||| | || | |||||||| || ||||||| ||||||||
Sbjct 1879 GAAGAAAACGAAACAGTGAACTCGCAAACGCAAACGATCTTGATAGACAATAAAGACACT 1938
Query 2056 ACTGATCTACTGGAAG-TTGTACCAGCAAAGGATCTTGAAGAAACAAACTTAACTAGTGA 2114
|||||| |||| |||| || |||| ||||| || |||||||||||||||| ||| ||||
Sbjct 1939 ACTGATATACTAGAAGCTT-CACCACCAAAGTATTTTGAAGAAACAAACTTGACTTGTGA 1997
Query 2115 ATCATCATCATCTCTGTGTATTGGTATGAAATCTGATGAAGCTTTGGAATCAACAGCAGA 2174
| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1998 AGCATCATCCTCTCTGTCTATTGGTATGAAACCTGATGAAGCTTTGGAATCAATAGCAGA 2057
Query 2175 TGCAAGTTTATGTAATCATCTTGCTGTGGAAGAAGAAGTAGATGGGTTGGCTTTGGGTTC 2234
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2058 TGCAAGTTTATGCAATCATCTTGCTGTGGAAGAAGAAGTAGATGGGTTGGCTTCGGGTTC 2117
Query 2235 GTTTATAGAAGAAGAAGAAAAGAAGGGAGAATCTGAAAAGCAAAATCTTTCTACATGGAG 2294
||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2118 ATTTATAGAAGAAGAAGAGAAGAAAGGAGATTCTGAAAAGCAAAAGCTTTCTACATGGAG 2177
Query 2295 GAACCTTATACAGAAGCACATGGTCATGAGAGACAACAGCGAGGGAAATCGTAATGAAAC 2354
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2178 GAACCTTATACAGAAGCACATGGTCATGAGAAACAACAGCGAGGGAAATCGTAATGAAAC 2237
Query 2355 TGAGCAAGAACACAAGTGGTCCTATGGAACTGATCAGATGACAGGTATTGATGATGCTAA 2414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238 TGAGCAAGAACACAAGTGGTCCTATGGAACTGATCAGATGACAGGTATTGATGATGCTAA 2297
Query 2415 TGCTGCAGCTGTTAAATCGATTCAGCTAGCATTTGAAACGATTCTCTCGGAGATACCTGA 2474
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2298 TGCTGCAGCTGTTAAATCGATTCAGCTAGCATTTGAAACGATTCTCTCAGAGATACCCGA 2357
Query 2475 CTCATCGTCCGACGAAGAGAGTGTTTCGGAATCATCTAACTCTCTTAAAGAGGAGAAAGA 2534
|||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2358 CTCATCATCCGACGAAGAGATTGTTTCGGAATCATCTAACTCTCTTAAAGAAGAGAAAGA 2417
Query 2535 ACATCAAGGAGAGACCAAGAGGAGCTGGAACAGCTTGAGAAAGGTTATACTTTTGAAAAG 2594
| |||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||
Sbjct 2418 AGATCACGGAGAGACCAAGAAGAGCTGGAACAGCTTGAGAAAGGTTATACTTCTAAAAAG 2477
Query 2595 ATTTGTGAAAAGCTTGGAGAAAG-TACAGGTTCCTAATCCGAGAAAGATGCGTAATCTTC 2653
|||||||||||||||||| |||| |||| ||| |||||||||||||||||||| |||||
Sbjct 2478 ATTTGTGAAAAGCTTGGA-AAAGATACATGTTTATAATCCGAGAAAGATGCGTAGTCTTC 2536
Query 2654 CTGTTGAGTCTGCATTTGAGGCAGAAAATGTATTCCTGAGACACCGATCAATAATGGAAG 2713
||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
Sbjct 2537 CTGTTGAATCTGCATTTGAGGCAGAAAATATATTACTGAGACACCGATCATTAATGGAGG 2596
Query 2714 GAACAAGAACAGAAGGAGAGGAAATGATGCTGGATTATGC-TCTGAGACAAGCGATATCA 2772
||| ||||| ||| ||||||||| |||||||||||||||| | |||||||||| ||||||
Sbjct 2597 GAAGAAGAATAGATGGAGAGGAACTGATGCTGGATTATGCGT-TGAGACAAGCTATATCA 2655
Query 2773 AGATTGGCTCCTATACAGAGAAAGAAGGTAGACCTCCTTGTGCAAGCCTTTGATATTGTC 2832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2656 AGATTGGCTCCTATACAGAGAAAGAAGGTAGACCTCCTTGTGCAAGCCTTTGATATAGTC 2715
Query 2833 CTTGATGGCCATGATACACCTAAACAAACCAAGAACAGTGATACTCCCCGGAACAATGAT 2892
||||||||||||||||| |||||||||| || || |||||||||||||||||||||||||
Sbjct 2716 CTTGATGGCCATGATACTCCTAAACAAAACAGGACCAGTGATACTCCCCGGAACAATGAT 2775
Query 2893 GAAACTA---AAGAAGGAAAACCGAGAGTAGAGGAAGGTTGTGAAGTCAACAAAGATGAG 2949
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2776 GAAACTAGCGAAGAAGGAAAACCGAGAGTAGAGGAAGATTATGAAGTCAACAAAGATGAG 2835
Query 2950 CAGAAGATTAAAAATGTCTTTGCAAGATTTCAGGTACATCAAAAAGACTTGAAAGGAGAA 3009
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2836 CAGAAGATTAAAAATGTCTTTGCAAGATTTCAGGTACATCAAAAAGACCTGAAAGGAGAA 2895
Query 3010 GAGGAGGTTCATAATACGCCTAAGGAATCCAGAAATTTGCCTCCTATCAGAAATTTTAAA 3069
||||||||| | |||||| |||||||||||||| |||||||| ||||||||| |||||
Sbjct 2896 GAGGAGGTTGTTTCTACGCCGAAGGAATCCAGAAAGTTGCCTCCAATCAGAAATGTTAAA 2955
Query 3070 CAGCGAATCGTGGTTGAGAAAGGGAAAGACTCGAGAATGTGGAAGCTCATCTATAAACAC 3129
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2956 CAGCGAATCGTGGTTGAGAAAGAGAAAGATTCGAGAATGTGGAAGCTCATCTATAAACAC 3015
Query 3130 ATGGTAACAGAGAAAGAAGGAATTGATTCTGCAAATGCTGAATCAGTGGCTTCAGTTGAA 3189
|||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||
Sbjct 3016 ATGGTAACAGAGAAAGAAGGAAATGATTCTGCAAATGGTGACTCAGTGGCTTCACTTGAA 3075
Query 3190 AGTGAATATGATGATGAGGCTGGTGGTCTTCAGATTGATGCAAGAAGAAGCGGAACAGTT 3249
|||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3076 GGTGAATGTGATGATGAAGCTGGTGGTCTTCAGATTGATGCGAGAAGAAGCGGAACAGTT 3135
Query 3250 ACACTTGTTAGAGAAGCGCTTGAGAAAATTCTCTCTGAAATTCCGGATAACTCATCTGAT 3309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3136 ACACTTGTTAGAGAAGCGCTTGAGAAAATTCTCTCTGAAATTCCGGATAACTCATCTGAT 3195
Query 3310 GATCAGTCTATGGACAGTGATATAACTACGGAGCAAGAACTATTTGAAAGAAACTCTCAA 3369
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 3196 GATCAGTCTATGGACAGTGATATAACTACGGATCAAGAACTATTTGAAAGGAACTCTCAA 3255
Query 3370 GTCAGTGAAGAAAAGAGTGAAGTTTCTTCAGCTA-------C-CTT-CAAACCAAAGTTT 3420
||||||||||| | || |||||||||||| | ||| ||||||||||| |
Sbjct 3256 GTCAGTGAAGA---GCCTG---TTTCTTCAGCTAGGGAAATCACTTTCAAACCAAAGTCT 3309
Query 3421 ACTGAGAAAAGAGTGAAGGGATGGAACAATGTGAAGAAAGTCATTCTTCTAAAGCGATTT 3480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3310 AATGAGAAAAGAGTGAAGGGATGGAACAATGTGAAGAAAGTCATTCTTCTAAAGCGATTT 3369
Query 3481 GTTAGTGACTTAGGAAGTCTGACAAGACTCAGCCCCAAGACACCTCGTGTTTTGCCATGG 3540
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3370 GTTAGTGATTTAGGAAGTCTGACAAGACTCAGCCCCAAGACTCCTCGTGTTTTGCCATGG 3429
Query 3541 GAACCCGATCCAGAAACCGAAAAGATCCGTTTGAGGCATCAGGAAATCGGAGGGAAGAGG 3600
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 3430 GAACCCGATCCAGAAACCGAAAAGATCCGGTTGAGGCATCAGGAAATTGGAGGGAAGAGG 3489
Query 3601 AATTCAGAGGAATGGATGCTCGATTATGCTCTACGACAAGCCATATCGACATTAGCACCG 3660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3490 AATTCAGAGGAATGGATGCTCGATTATGCTCTACGACAAGCCATATCGACATTAGCACCG 3549
Query 3661 TCTCAGAAAAGAAAAGTCTCTCTTCTTGCACAAGCTTTCGACACTATAAGCTTACAAGAT 3720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3550 TCTCAGAAAAGAAAAGTCTCTCTTCTTGCAGAAGCTTTCGACACTATAAGCTTACAAGAT 3609
Query 3721 ATGGGGAGTGGTTCAACCCCGGGGTCAGCAGCATCGTCCAGGAACATCTCTCGTCAATCC 3780
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3610 ATGGGGAGTGGTTCAACCCCGGGGTCAGCAACATCGTCCAGGAACATCTCTCGTCAATCC 3669
Query 3781 AGCATTTCTTCTATGGCGGCCCATTA-TGAAAATGAAGCTAATGCTGAGATCATTAGAGG 3839
|||||||||||| |||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 3670 AGCATTTCTTCTGTGGCGGTCCAT-AGTGAAAATGAAGCTAATGCTGAGATCATTAGAGG 3728
Query 3840 AAAACTGAGAAATCTCCAAGAAGATCTCAAAGAGAGTGCAAAACTTGATGGTGTATCCAA 3899
|||| |||||||||| ||||| ||||||||||||||| ||||||||||| |||| ||||
Sbjct 3729 AAAATTGAGAAATCTACAAGAGGATCTCAAAGAGAGTACAAAACTTGATAATGTAGCCAA 3788
Query 3900 AGATTTGGAAGAGAAACAACAGTGCTCGAGCTTGTGGCGGATATTATGCaaacagatgga 3959
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3789 TGATTGGGAAGAGAAACAACAGTGCTCGAGCTTGTGGCGGATATTATGCAAACAGATGGA 3848
Query 3960 agacaacgagaaaaaccaaacattgcctgaagaaacaagaaaagaagaa---gaagaaga 4016
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 3849 AGACAACGAGAAAAACCAAACATTGCCTGGAGAAACAAGAAAAGAAGAACAAGAAGAAGA 3908
Query 4017 agaactgaaagaagaCACAAGTGTGGATGGTGAAAAGATGGAACTTTACCAAACCGAAGC 4076
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3909 AGAACTGAAAGAAGACGCAAGTGTGGATGGTGAAAAGATGGAACTTTACCAAACCGAAGC 3968
Query 4077 AGTGGAACTATTAGGAGAAGTCATAGATGGAATCTCTCTTGAAGAGAGTCAAGATCAGAA 4136
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3969 AGTGGAGCTATTAGGAGAAGTCATAGATGGAATTTCTCTTGAAGAGAGTCAAGATCAGAA 4028
Query 4137 CCTAAAC-AATGAAGAAACAAGACAGAAGAGTGAAACTCTACAGGTCTCAAAAGTGAGGA 4195
||| | || | |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 4029 CCTCGTCCAAGGG-GAAACAAGGCAGAAGAGTGAAACTTTACAGGTCTCAAAAGTGAGGA 4087
Query 4196 TTGACCGATGGAGCAACCTCAAAAGAGCGATTTTGCTTAGGAGATTCGTCAAAGCCTTAG 4255
||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||
Sbjct 4088 TTGACCGATGGAGCAACCTGAAAAGAGCGGTTTTACTCAGGAGATTCGTCAAAGCCTTAG 4147
Query 4256 AGAATGTAAGGAAATTCAACCCAAGAGAGCCTCGGTTCTTGCCTCCGAACCCCGAAGTTG 4315
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 4148 AGAATGTAAGGAAATTCAACCCGAGAGAGCCTCGGTTCTTGCCTCCGAACCCCGAAGTCG 4207
Query 4316 AAGCGGAAAAGGTGAATCTTAGGCATCAAGAAACCCAAAACAAGAAAAATGGCGATGAAT 4375
||||||||||||||||||| |||||||||||||| ||||| |||||||| || || ||||
Sbjct 4208 AAGCGGAAAAGGTGAATCTAAGGCATCAAGAAACTCAAAATAAGAAAAACGGTGACGAAT 4267
Query 4376 GGATGGTCGATAACGCACTTCAAGGAGTGGTTTCGAAGCTAACACCAGCTCGCAAACTTA 4435
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 4268 GGATGGTCGACAACGCGCTTCAAGGAGTTGTTTCGAAGCTAACACCAGCTCGGAAACTTA 4327
Query 4436 AAGTTCAGTTATTGGTGCAAGCGTTTGAGTCACTTTCGGCTACAGGGAACTGAGACCAAG 4495
||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||| |||
Sbjct 4328 AAGTTCAATTATTGGTGCAAGCGTTTGAGACACTTTCAGCTACAGGGTACTGAGACAAAG 4387
Query 4496 CAATATTTCTTATTACAAAGTTTCCAGTTCATAAGCTTCAGAAAACAAAGAACCATGAAG 4555
|||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 4388 CAATATGTCTTATTACAAAGTTTTCAGTTCATAAGCTTCTGAAATTAAAGAACCATGAAG 4447
Query 4556 AACAA 4560
|||||
Sbjct 4448 AACAA 4452
Score = 1657 bits (897), Expect = 0.0
Identities = 1043/1110 (94%), Gaps = 24/1110 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAA-TCCGATGTTCCCGGAGAAATGGGAGGAGAGCTCAACAAGTAAAAGCAGCAG 59
||||| || |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1 ATGTC-AAGTCCGATGTTCCCGGAGAAAT--G-GGAGAGCTCAACAAGTAAAAGCAGCAG 56
Query 60 AAGAG-TTCATAAAAGGAGAGAGAGGAAGATGTGGAAGAAACCCATCAAGCTTTCTAGAT 118
||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 57 AAGAGTTTC-TAAAAGGAGAGAGAGGAAGATGTGGAAGAAACCCATCAAGATTTCTAGAT 115
Query 119 TTCCCAGTTTCGGTTTCTCCGGTTCCGACTTCACTCTTGATCAGATTCCGGCCATCTTCT 178
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 116 TCCCCAGTTTCGGTTTCTCCGGTTCCGACTTCACTGTTGATCAGATTCCGGCCATCTTCT 175
Query 179 CCGGCTACACTGCCGAGTCTGAAGATTCCTCTTCCTCCGAGATGTCTGATGATTCCAGAA 238
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 176 CCGGCTACACTGCCGAGTCAGAAGATTCTTCTTCTTCTGAGATGTCTGATGATTCCAGAA 235
Query 239 CTTACTCGAAATCATCTGATGAGAATGAGGAGCTTGACCAGGCAAGTCTCACAATCTGTT 298
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
Sbjct 236 CTTACTCGAAATCATCTGATGAGAATGAGGAGATTGACCAGGCAAGTCTCAC-A-----T 289
Query 299 CTGAAAGGCCAAGATCGGTGAAGAGACGAGCGAAATCGAAGAGTATTTCACGAATTTCAA 358
|||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 290 CTGAAAGGTCAAGATCGGTGAAGAGACGAGCGAAATCGAAGAATATTTCTCGAATTTCAA 349
Query 359 GCATGAAGGTTCTTAGGAGACAGTCAACGAGGACATTATATGGAGCAGGACAGAGATTGA 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 350 GCATGAAGGTTCTTAGGAGACAGTCAACGAGGACATTATATGGAGGAGGACAGAGGCTGA 409
Query 419 AGAAGATGAGATCTATGAAGCGTTTAACTTCAAATTCGAGACAAATTCTAAGGAAAAAGA 478
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 410 AGAAGATGAGATCTATGAAGCGTTTAACTTCAAATTCGAGACATGTTCTAAGGAAAAAGA 469
Query 479 ATCTTGATAGGGGAGATTTTGGATTGTTACAGCCTCATTACTTGAGACCAACGAGCTCTT 538
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ATCTTGATAGAGAAGATTTTGGATTGTTACAGCCTCATTACTTGAGACCAACGAGCTCTT 529
Query 539 CTGCTTCAAAGAATGTCGAAAACAATCAGAAGAATCTTGGAGCAGCTAGGTTGAAGAGAA 598
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 530 CTGCTTCAAAGAATGTCGAAAATATTCAGAAGAATCTTGGAGTAGCTAGGTTGAAGAGAA 589
Query 599 TAGCAAGCTTGAGATACAATGGTTTGCTTAAAGCTACATGTTCTTCAGCTATGAAAGGTT 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTGCAAGCTTGAGATACAATGGTTTGCTTAAAGCTACATGTTCTTCAGCTATGAAAGGTT 649
Query 659 CTTCTTCT---AAGAGGAGTAATGATGTTTGCACTTATAGGTATTGTTCTCTGCATGGTA 715
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 650 CTTCTTCTTCTAAGAAGAGTAATGATGTTTGCACTTATAGGTATTGTTCTCTGCACGGTC 709
Query 716 GGCGTCATAGCCACGCTGCGGATAACAATGCTGGTGTTCCCTCTTTGAAGCGGTTTGTGT 775
||||||||||||||||||||||||||| | || | | || |||||||||||||||||||
Sbjct 710 GGCGTCATAGCCACGCTGCGGATAACA--G-TG-T-T-CCGTCTTTGAAGCGGTTTGTGT 763
Query 776 CGATGAGGAGGAAGTTTATGAATAGGCAGAAGAGTGT-GAACCGGAGGTTGGTGTTATTG 834
| ||||||||||||||| ||||||||||||||||| | ||||||| | ||||||||||||
Sbjct 764 CTATGAGGAGGAAGTTTTTGAATAGGCAGAAGAGT-TCGAACCGGCGTTTGGTGTTATTG 822
Query 835 AAGAGGACTTTGAGTAGAAAGAGAGGGCCTTTAGGTGGTCGGGTTGTGACTGATCAAGAA 894
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 823 AAGCGGACTTTGAGTAGAAAGAGAGGGCCTTTAGGCGGTCGGGTTGTGACTGATCAAGAA 882
Query 895 TCAAAGGAGGTGGATGATAATGTAGATGGAGATTCTGATGAAGAGGTGTTTGAAGAAGAG 954
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 883 TCAAAGGAGGTGGATGATAATGTAGATGGAGATTCTGATCAAGAGGTGTTTGAAGAAGAG 942
Query 955 GTTTCCAGCTCTGTGGATGGTGGAAATGATAATGAATCGATTGGAAGATCTAGTGAGACA 1014
||||||||||| | | |||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 943 GTTTCCAGCTCGGAGAATGGTGGAAATGATAAGGAATCGTTTGGAAGATCTAGTGAGACA 1002
Query 1015 GTAATGGTTGATGTTGATGATAATGTGGATAGAGGAATGGATGCAATGGAGACTGTTGCA 1074
|||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1003 GTAATGGTAGATGTTGATGATAATGTGGATAGAGGAATGGATTCAATGGAGGCTGTTGCA 1062
Query 1075 TCAAAGGTTCAGGAATCTAAAACGGAGACT 1104
||| ||||||||||||||||| ||||||||
Sbjct 1063 TCAGAGGTTCAGGAATCTAAACCGGAGACT 1092
Score = 1319 bits (714), Expect = 0.0
Identities = 841/903 (93%), Gaps = 6/903 (1%)
Strand=Plus/Plus
Query 1109 GTGCCACACTATGGCGCGCTATATGTGAGCAAACTGTGACGGGTCACGATCATGATGAT- 1167
||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1136 GTGACACACTATGGCGTGCTATATGTGAGCAAACTGTGATGGGTCTCGGTCATGATGATG 1195
Query 1168 ----GGT-AAGGTCGATGGAACGACGAGTGATGGAACTGTGGGAGATAATGAAGAAGTTT 1222
||| |||||||||||||| | |||||| | ||||||||||||||||||||||||||
Sbjct 1196 GGAAGGTGAAGGTCGATGGAACAAAGAGTGAAGAAACTGTGGGAGATAATGAAGAAGTTT 1255
Query 1223 GCAGAGAAGGTTCCTCTGGAGAATTGAGAGAAGAGGATGGAAAGAAAACCGAATATGTAT 1282
||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 1256 GCAAAGAAGGTTCTTCTGGAGAAATGAGAGAAGGGGATGGAAAGAAAACCGAAAATGTAT 1315
Query 1283 GGAATGAAACTGTAACGCTCGTTAAGCAAGCGTTTGATGAGATACTTGCGGAAATCACCG 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GGAATGAAACTGTAACGCTCGTTAAGCAAGCGTTTGATGAGATACTTGCGGAAATCACCG 1375
Query 1343 ATGATGACTCGTCTGATGATATTTCTATGACGAAGGATGAAGCTTTAGAGGTTGGATTGG 1402
|||||||||||||||||||||||||||| || || |||||| ||||||||| ||||||||
Sbjct 1376 ATGATGACTCGTCTGATGATATTTCTATTACAAAAGATGAACCTTTAGAGGGTGGATTGG 1435
Query 1403 GGGAAGAAGATGTAGGAGCGGATTCGAGTGATTCAAGTTGCTCGGATATGCAGCCTGTTA 1462
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 1436 AAAAAGAAGATGTAGGAGCGGATTCGAGTGATTCAAATAGCTCGGATATGCAGCCTATTA 1495
Query 1463 TAGAAAGAGATACACATTTGTCTGTGATTGCTTCTACTTTTCATATGAGAGATGAATTTG 1522
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1496 TAGGAAGAGATACACATTTGTCTGTGATTGCTTCTACTTTTCATATGAGAGAAGAATCTG 1555
Query 1523 GTCATCAGAGAGGTCCCAAGAAGTGGAGTTACTTGAAAAGAGTAATACTTCTCAAGAGAT 1582
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1556 ATCATCAGAGAGGTCCCAAGAAGTGGAGTTACTTGAAAAGAGTAATTCTTCTCAAGAGAT 1615
Query 1583 TTCTCAAGTCTTTGGACCGAAAAGAGAGGCGTAAGTTATCTGATGGCAAAGAGAGTGAAA 1642
|||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1616 TTCTCAAGTCGTTGGAACGGAAAGAAAGGCGTAAGTTGTCTGATGGCAAAGAGAGTGAAA 1675
Query 1643 CAATAATGCGGTTGAGAAGAGAGCTGGTTGGGGAGAGGAAGAATGCAGAAGAATGGATGC 1702
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1676 CAATAATGCGGTTGAGAAGAGAGTTGGTTGGGGAGAGGAAAAATGCAGAAGAATGGATGC 1735
Query 1703 TTGATCACGCACTTAGGCAAGTCATTTCGACACTTGCTCCATCGCAGAAAAAGAAAGTAA 1762
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1736 TTGATCATGCACTTAGGCAAGTCATTTCGACACTTGCTCCATCGCAGAAAAAGAAAGTGA 1795
Query 1763 AACATCTTGTTAAAGCTTTTGAAAGTTTAATCCCAATGGATGGTGGTTCTAGAGGTCATG 1822
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1796 AGCATCTTGTTAAAGCTTTTGAAAGTTTAATCCCAATGGATGGTGGCTCTAGAGGTCATG 1855
Query 1823 ATGATCTTGTAAGTCCTGCAAGAGAAGAGAACGAAACAGTGAACTCGCAAACGCAAACGA 1882
||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1856 ATGATCTTGGAAGTCCCACAAGAGAAGAAAACGAAACAGTGAACTCGCAAACGCAAACGA 1915
Query 1883 TCTTGAGAGACAATAAAGACGCTACTGATATACTAGAAGTTTCACCAGCAAAGGATCTTG 1942
|||||| ||||||||||||| |||||||||||||||||| ||||||| ||||| || |||
Sbjct 1916 TCTTGATAGACAATAAAGACACTACTGATATACTAGAAGCTTCACCACCAAAGTATTTTG 1975
Query 1943 AAGAAACAAACTTAACTTGTGAAGCATCATCCTTTTTGTCTATTGATATGAAATCTGATG 2002
||||||||||||| ||||||||||||||||||| | ||||||||| ||||||| ||||||
Sbjct 1976 AAGAAACAAACTTGACTTGTGAAGCATCATCCTCTCTGTCTATTGGTATGAAACCTGATG 2035
Query 2003 AAG 2005
|||
Sbjct 2036 AAG 2038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 180887644469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5