BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04030.1 Length=231 Score E Sequences producing significant alignments: (Bits) Value Ahg939794 jgi|Araly1|939794|scaffold_600338.1 291 2e-78 > Ahg939794 jgi|Araly1|939794|scaffold_600338.1 Length=268 Score = 291 bits (157), Expect = 2e-78 Identities = 208/232 (90%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 1 ATGGCGCTTCGTATGAACCATGTAAGGTTTCTTCTTATCCTCATTGTGGTTGCTTTCGTG 60 ||||||| |||||| ||||| ||||||||| ||||||||||||| || || |||| |||| Sbjct 21 ATGGCGCCTCGTATAAACCAGGTAAGGTTTATTCTTATCCTCATGGTTGTCGCTTCCGTG 80 Query 61 GCCGGA-GAAAGTTTTACGGTGAAGCAAGATTCAGCAAAGGGAGATGTAATTTGGGAAGA 119 |||||| |||| |||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 81 GCCGGAGGAAA-TTTTCCGGTGAAGCAAGATTCAGCAAAGAGAGATACAATTTGGGAAGA 139 Query 120 AGTATTTCACGGGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTCCAAGACGTAGTCC 179 ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 140 AGTATTTCACGAGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTAGAAGAGGTAGTCC 199 Query 180 AGCACCTATTCCTCATGATGATTTTGCACCACCACGTAGGTTGAAAGCGTAA 231 ||||||||||||||||||| ||| ||||||||||||| || ||||||||| Sbjct 200 AGCACCTATTCCTCATGAT--TTTA-CACCACCACGTAGCTTAAAAGCGTAA 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7943158288 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5