BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04030.1

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939794 jgi|Araly1|939794|scaffold_600338.1                        291    2e-78


> Ahg939794 jgi|Araly1|939794|scaffold_600338.1
Length=268

 Score =  291 bits (157),  Expect = 2e-78
 Identities = 208/232 (90%), Gaps = 5/232 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGCTTCGTATGAACCATGTAAGGTTTCTTCTTATCCTCATTGTGGTTGCTTTCGTG  60
            ||||||| |||||| ||||| ||||||||| ||||||||||||| || || |||| ||||
Sbjct  21   ATGGCGCCTCGTATAAACCAGGTAAGGTTTATTCTTATCCTCATGGTTGTCGCTTCCGTG  80

Query  61   GCCGGA-GAAAGTTTTACGGTGAAGCAAGATTCAGCAAAGGGAGATGTAATTTGGGAAGA  119
            |||||| |||| |||| ||||||||||||||||||||||| |||||  ||||||||||||
Sbjct  81   GCCGGAGGAAA-TTTTCCGGTGAAGCAAGATTCAGCAAAGAGAGATACAATTTGGGAAGA  139

Query  120  AGTATTTCACGGGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTCCAAGACGTAGTCC  179
            ||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct  140  AGTATTTCACGAGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTAGAAGAGGTAGTCC  199

Query  180  AGCACCTATTCCTCATGATGATTTTGCACCACCACGTAGGTTGAAAGCGTAA  231
            |||||||||||||||||||  |||  ||||||||||||| || |||||||||
Sbjct  200  AGCACCTATTCCTCATGAT--TTTA-CACCACCACGTAGCTTAAAAGCGTAA  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7943158288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5