BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04040.1
Length=3275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487184 jgi|Araly1|487184|fgenesh2_kg.6__318__AT5G04040.1 4573 0.0
> Ahg487184 jgi|Araly1|487184|fgenesh2_kg.6__318__AT5G04040.1
Length=3017
Score = 4573 bits (2476), Expect = 0.0
Identities = 2785/2933 (95%), Gaps = 26/2933 (1%)
Strand=Plus/Plus
Query 340 TAATCGaaaaaagaaaagaaaaaaaGAAGCCGTCATGATCGGCCATTTCTCGGCCGAGTC 399
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TAATCGAAAAAAGAAAAGGAAAAAAGAAGCCGTCATGATCGGCCATTTCTCGGCCGAGTC 160
Query 400 TGAGTCTGACTCTGCGTCCGTGTCACCATTATCAGATCGAGCCTGTCTTATCTCGTTGCG 459
||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 161 TGAGTCTGACTCTGCGTCCGTGTCACCATTATC-GATCTCTTCTGTCTTATCTCGTCGCG 219
Query 460 ATTCCCTATGCAAAAATCTTCTTCttttttttATTCCCCCATTTAtctctgatctcttct 519
|||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||
Sbjct 220 ATTCCCTATGCAAAAA---TCTTCTTTTTAAAATTGCCCCATTTATTTCTGATCTCTTCT 276
Query 520 ctcttctcaagtaaacctctctgcttcacgtctcttcttttcttGTCGATTTTC-CC--- 575
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 277 CTCTTCCCAAGTAAACCTCTCTGCTTCACGTCTCTTCTTTGCTTGTCGATTTTCTCCAGA 336
Query 576 --CAGATAATCAGTTGAAAACACACCCAAATTCATCTTCGAATCAATAATGGATATAAGT 633
||| ||| |||||| |||||||| |||| ||||||||||||| |||||||||||||
Sbjct 337 ATCAGGTAAACAGTTGGAAACACACACAAAATCATCTTCGAATC---AATGGATATAAGT 393
Query 634 AATGAGGCTAGTGTCGATCCCTTTTCGATTGGACCATCATCTATCATGGGTCGAACCATT 693
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 394 AATGAGGCTAGTGTTGATCCCTTTTCGATTGGACCCTCATCGATCATGGGTCGAACCATT 453
Query 694 GCTTTCAGAGTCTTGTTCTGTAGATCAATGTCACAGCTTAGGCGTGATCTCTTTCGGTTC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCTTTCAGAGTCTTGTTCTGTAGATCAATGTCACAGCTTAGGCGTGATCTCTTTCGGTTC 513
Query 754 TTGTTGCATTGGTTTCTTAGATTTAAGCTGACCGTTTCACCGTTTGTGTCGTGGTTTCAT 813
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 514 TTGTTGCATTGGTTTCTTAGATTTAAGCTGACCGTTTCACCGTTTGTGTCATGGTTTCAT 573
Query 814 CCTCGGAACCCTCAAGGGATTTTAGCGGTGGTTACAATCATTGCCTTT-GTGTTGAAACG 872
|| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 574 CCCCGGAACCCTCAAGGGATTTTAGCAGTGGTTACAATCATTGC-TTTCGTGTTGAAACG 632
Query 873 ATACACGAATGTGAAAATAAAGGCGGAAATGGCTTACCGGAGGAAGTTTTGGAGGAATAT 932
||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 633 TTACACGAATGTGAAAATGAAGGCGGAAATGGCTTACCGGAGGAAATTCTGGAGGAACAT 692
Query 933 GATGCGGACGGCTTTGACTTATGAGGAATGGGCTCATGCTGCTAAGATGTTAGAGAAGGA 992
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 693 GATGCGTACGGCTTTGACTTATGAGGAATGGGCTCATGCTGCTAAGATGTTAGAAAAGGA 752
Query 993 AACACCAAAGATGAATGAATCTGATCTTTATGATGAAGAGTTGGTTAAGAACAAGCTTCA 1052
||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 753 GACATTAAAGATGAATGAATCTGATCTCTATGATGAAGAATTGGTTAAGAACAAGCTTCA 812
Query 1053 GGAGCTTCGTCATCGTCGCCAAGAAGGCTCACTTAGAGACATTATGTTTTGTATGAGAGC 1112
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 813 GGAGCTTCGTCATCGTCGCCAAGAAGCCTCACTTAGAGACATCATGTTTTGTATGAGAGC 872
Query 1113 TGATTTGGTGAGGAATCTCGGTAATATGTGTAATTCGGAGCTTCATAAAGGTAGACTTCA 1172
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TGATCTCGTGAGGAATCTCGGTAATATGTGTAATTCGGAGCTTCATAAAGGTAGACTTCA 932
Query 1173 GGTTCCTAGACATATCAAAGAGTACATTGATGAGGTGTCTACTCAGTTGAGAATGGTTTG 1232
|||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||
Sbjct 933 GGTTCCTAGACATATCAAAGAGTATATCGACGAGGTCTCTACTCAATTGAGAATGGTTTG 992
Query 1233 TAACTCTGATTCAGAGGAGCTTTCTTTAGAAGAGAAGCTTTCTTTTATGCATGAAACACG 1292
||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 993 TAACTCTGACTCGGAGGAGCTTGCTTTAGAAGAGAAGCTTTCCTTTATGCATGAAACGCG 1052
Query 1293 GCATGCCTTTGGTAGAACGGCTTTGCTTTTGAGTGGTGGGGCTTCTCTTGGTGCGTTTCA 1352
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1053 ACACGCCTTTGGTAGAACGGCTTTGCTTCTGAGTGGTGGGGCTTCTCTTGGTGCCTTTCA 1112
Query 1353 TGTTGGTGTGGTTAGGACTTTGGTTGAGCATAAGCTTTTACCTCGAATAATTGCTGGTTC 1412
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1113 TGTAGGTGTGGTTAGGACTCTGGTTGAGCATAAGCTTTTACCTCGGATAATTGCTGGTTC 1172
Query 1413 TAGTGTTGGATCCATCATTTGTGCTGTTGTGGCCTCAAGGTCTTGGCCAGAACTACAGAG 1472
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TAGTGTTGGATCCATAATTTGTGCTGTTGTGGCCTCAAGGTCTTGGCCAGAACTACAGAG 1232
Query 1473 TTTCTTTGAGAATTCTTTGCATTCTTTACAGTTCTTTGATCAGCTCGGAGGCGTGTTCTC 1532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1233 TTTCTTTGAGAATTCTTTGCATTCTTTACAGTTCTTTGATCAGCTCGGAAGCGTGTTCTC 1292
Query 1533 AATAGTGAAACGGGTAATGACACAAGGGGCTCTACACGATATCAGACAGTTGCAATGTAT 1592
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1293 AATCGTGAAACGGGTAATGACACAAGGTGCTCTACATGATATCAGACAGTTGCAATGTAT 1352
Query 1593 GCTTAGAAACCTCACAAGCAATCTCACATTCCAAGAAGCTTATGACATGACAGGAAGGAT 1652
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GCTTAGAAACCTCACAAGTAATCTCACATTCCAAGAAGCTTATGACATGACAGGAAGGAT 1412
Query 1653 TCTCGGGATCACCGTTTGCTCCCCAAGAAAGCATGAACCTCCTCGGTGTCTTAACTATTT 1712
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TCTCGGGATCACTGTTTGCTCCCCAAGAAAGCATGAACCTCCTCGGTGTCTTAACTATTT 1472
Query 1713 GACTTCGCCTCATGTGGTTATATGGAGCGCAGTGACTGCTTCTTGTGCTTTTCCTGGTCT 1772
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1473 GACTTCGCCTCATGTGGTTATATGGAGCGCAGTGACTGCATCTTGTGCTTTTCCTGGTCT 1532
Query 1773 CTTTGAAGCTCAAGAGCTAATGGCTAAAGATCGAAGTGGAGAGATCGTACCGTATCATCC 1832
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1533 CTTTGAAGCTCAAGAACTAATGGCTAAAGATCGAAGTGGAGAAATTGTACCGTATCATCC 1592
Query 1833 ACCTTTCAATTTGGATCCAGAAGTAGGCACTAAATCATCATCTGGACGCCGGTGGAGAGA 1892
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1593 ACCTTTCAATTTGGATCCAGAAGTAGGCACTAA-T--TCATCTGGACGTCGGTGGAGAGA 1649
Query 1893 TGGTAGTTTGGAGGTTGATTTACCAATGATGCAGCTTAAAGAACTGTTCAATGTCAATCA 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 TGGTAGTTTGGAGGTTGATTTACCAATGATGCAGCTTAAAGAACTGTTCAATGTCAATCA 1709
Query 1953 TTTTATTGTGAGCCAAGCCAATCCTCACATTGCTCCATTACTGCGTCTAAAGGATTTAGT 2012
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1710 TTTTATTGTGAGCCAAGCCAATCCTCACATTGCTCCGTTACTGCGTCTAAAGGATTTAGT 1769
Query 2013 TCGAGCTTATGGTGGTAGATTCGCAGCTAAGCTCGCGCATCTAGTGGAGATGGAGGTCAA 2072
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 TCGAGCTTACGGTGGTAGATTCGCAGCTAAGCTCGCGCATCTAGTGGAGATGGAGGTCAA 1829
Query 2073 ACATAGATGCAACCAGGTATTAGAGCTCGGTTTTCCTCTCGGTGGACTCGCAAAGCTTTT 2132
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1830 ACATAGATGCAACCAGGTATTAGAGCTCGGTTTTCCGCTCGGTGGACTGGCAAAGCTTTT 1889
Query 2133 TGCTCAGGAGTGGGAAGGTGATGTTACAGTTGTAATGCCTGCTACTCTTGCTCAGTACTC 2192
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1890 TGCTCAGGAGTGGGAAGGTGATGTAACAGTTGTAATGCCTGCTACTCTAGCTCAGTACTC 1949
Query 2193 GAAGATTATACAAAATCCGACTCATGTCGAGCTTCAGAAAGCGGCTAACCAAGGAAGAAG 2252
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 GAAGATTATACAAAACCCGACTCATGTCGAGCTTCAGAAAGCGGCTAACCAAGGAAGAAG 2009
Query 2253 ATGCACTTGGGAGAAGCTCTCAGCCATAAAATCAAACTGCGGGATCGAGCTTGCGCTTGA 2312
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2010 ATGCACGTGGGAGAAGCTCTCAGCCATAAAATCAAACTGTGGGATCGAGCTTGCGCTTGA 2069
Query 2313 TGATTCTGTAGCTATTCTTAACCATATGCGGAGGCTCAAGAAAAGTGCGGAGAGAGCCGC 2372
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 2070 TGATTCTGTAGCTATTCTTAACCATATGCGTAGGCTCAAGAAAAGCGCCGAGAGAGCCGC 2129
Query 2373 CACTGCCACGTCTTCGTCTCATCACGGATTGGCTTCAACCACCAGATTCAATGCTTCAAG 2432
|||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 2130 CACTGCCACGTCATCGTCTCATCACGGATTAGCATCAACCACCCGATTCAATGCTTCAAG 2189
Query 2433 AAGAATCCCATCTTGGAACGTCCTTGCCAGAGAGAACTCAACAGGCTCACTGGATGATCT 2492
|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 2190 AAGAATCCCATCTTGGAACGTCATTGCCAGAGAGAACTCAACTGGTTCACTGGATGACCT 2249
Query 2493 AGTCACTGACAATAACCTCCACGCTTCTTCGGGCAGGAATTTAAGCGACAGTGAAACAGA 2552
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2250 AGTCGCTGACAATAACCTCCACGCTTCTTCGGGCAGGAATTTAAGCGACAGTGAAACCGA 2309
Query 2553 GAGCGTGGAGTTGAGTTCTTGGACAAGAACTGGTGGACCTTTAATGAGAACAGCTTCTGC 2612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2310 GAGCGTGGAGTTGAGTTCTTGGACAAGAACTGGTGGACCTTTAATGAGAACAGCTTCTGC 2369
Query 2613 TAATAAGTTCATTGATTTTGTTCAGAGTCTTGATATCGACATTGCATTGGTCAGAGGATT 2672
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2370 TAATAAGTTCATCGATTTTGTTCAAAGTCTTGATATCGACATTGCATTGGTCAGAGGATT 2429
Query 2673 TAGTAGCAGTCCCAATTCTCCAGCAGTTCCTCCTGGTGGCTCGTTTACTCCAAGCCCGAG 2732
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2430 TAGTAGCAGTCCCAATTCTCCAGCAGTTCCTCCTGGTGGGTCGTTTACTCCAAGCCCGAG 2489
Query 2733 ATCCATAGCGGCTCATTCGGATATCGAATCAAACAGCAATAGCAACAATCTTGGAACAAG 2792
||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||
Sbjct 2490 ATCCATAGCGGCTCACTCCGAGAGCGAATCAAACAGCAATAGCAACAATCTTGGAACAAG 2549
Query 2793 CACTTCAAGCATAACAGTTACTGAAGGTGATCTTCTACAGCCTGAGAGAACGAGTAACGG 2852
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2550 CACTTCAAGCATAACAGTTACTGAAGGTGATCTTCTACAGCCAGAGAGAACGAGTAACGG 2609
Query 2853 ATTTGTGTTAAACGTCGTTAAAAGAGAGAACTTGGGAATGCCATCGATTGGGAACCAAAA 2912
||||||||||||||||| ||||||||||||||||||||| | || |||||||| |||||
Sbjct 2610 GTTTGTGTTAAACGTCGTCAAAAGAGAGAACTTGGGAATGTCGTCAATTGGGAATCAAAA 2669
Query 2913 TACAGAGTTACCAGAGAGTGTACAGCTCGATATACCGGAGAAGGAGATGGATTGTAGCTC 2972
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2670 TACAGAGTTACCGGAGAGTGTACAGCTCGATATACCGGAGAAGGAGATGGATAATAGCTC 2729
Query 2973 TGTATCAGAACACGAAGAAGATGATAACGAC-AATGAAGAAGAACATAACGGCTCGAGTC 3031
|||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||
Sbjct 2730 TGTATCAGAACATGAAGATGACGATAAAGAAGAA-GAAGAAGAACATAACGGCTCGAGTC 2788
Query 3032 TGGTTACTGTTTCTTCAGAAGATTCCGGTTTACAAGAACCGGTGTCTGGTAGTGTTATAG 3091
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2789 TGGTTACTGTTTCTTCAGAAGATTCCGGTTTACAAGAACCGGTGACTGGTAGTGTTATAG 2848
Query 3092 ATGCTTAGAGTGTGATTGATTCAAGTGAGTATAGATTCTTAATTAAATTTGCAGAGTTTC 3151
||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 2849 ATGGTTAGAGTG--ATTGATTCAAGTGA--ATAGATTCTCAATTAAATTTGCAGAGTTTC 2904
Query 3152 CAAAGGGTTTAGTGCACCACTTGTGTATGTTTGTATTGCTTATTGTTTGAAATTCATTTG 3211
|||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2905 CAAAGGGTTTGGTGCGCCTCTTGTGTATGTTTGCATTGCTTATTGTTTGAAATTCATTTG 2964
Query 3212 TGAAATCGAAATATATCTGTAAATT-CAGAAAATA-TTCTCTCATCCATTACA 3262
||||||||||||||||||||||||| ||||||| | ||||||||| |||||||
Sbjct 2965 TGAAATCGAAATATATCTGTAAATTTCAGAAAAAAATTCTCTCATTCATTACA 3017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123610997104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5