BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04045.1
Length=463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939798 jgi|Araly1|939798|scaffold_600342.1 433 6e-121
Ahg939799 jgi|Araly1|939799|scaffold_600343.1 361 3e-99
Ahg939797 jgi|Araly1|939797|scaffold_600341.1 239 1e-62
> Ahg939798 jgi|Araly1|939798|scaffold_600342.1
Length=335
Score = 433 bits (234), Expect = 6e-121
Identities = 304/337 (90%), Gaps = 7/337 (2%)
Strand=Plus/Plus
Query 15 TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA 74
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1 TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAGCATTTTCGTCGTTCTTCTCCTAA 60
Query 75 TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT 134
||||||||||||| ||| |||||||| ||||||| |||||||||||||||| |||||| |
Sbjct 61 TTTCTTCATGTCTAATTCTGAGGAGTGAAGGTCAGTTTCGATGTAAGAGTGCTGCGGATT 120
Query 135 GTGATTCTCGTGGTTGCAGAGTAGGAACACATGTAATATGCAATGAACAC--CACATATG 192
||||| ||||||||||||||||||| |||||||||||||| ||| | || |||| |||
Sbjct 121 GTGATACTCGTGGTTGCAGAGTAGGGACACATGTAATATGTAAT-A-CAGGGCACAAATG 178
Query 193 TACATGTGCTCATGGTTCTCCCATTGGTGGTCAGTGTGATGGAGTCGAAGACTGTGACCT 252
|||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 179 TACATGTGCTCAAGGTTCTCCTATTGGTGGTCAGTGTAATACAGTCGAAGACTGTGACAG 238
Query 253 TTCTGGCTGTCCACCAAACTCTCATGTTATATGCGATAGAATTGGAGGAAACTTCTGCAC 312
|||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 239 TTCTGGTTGTCCACCAAACTCTCATGTTATATGCGATACAATTAGAGGAAACTTCTGCAC 298
Query 313 TTGTGTCCCCAATTGA-T-TT-AAATGGTCTCTAATG 346
|||||| ||||||||| | || ||| |||||||||||
Sbjct 299 TTGTGTTCCCAATTGAATATTTAAAGGGTCTCTAATG 335
> Ahg939799 jgi|Araly1|939799|scaffold_600343.1
Length=326
Score = 361 bits (195), Expect = 3e-99
Identities = 291/335 (87%), Gaps = 15/335 (4%)
Strand=Plus/Plus
Query 15 TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA 74
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 1 TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAACATTTTCTTCGTTCTTCTCCTAA 60
Query 75 TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT 134
|||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||
Sbjct 61 TTTCTTCATGTCTGATTTTGAGAAGTGAAGGT-AA-----ATGTAAGAGTGTTGCGGAAT 114
Query 135 GTGATTCTCGTGGTTGCAGAGTAGGAACA-CATGTAATATGCAATGA-ACACCAC-ATAT 191
||||| ||||| |||||||| | || || ||| ||||||| | | | ||| ||| | ||
Sbjct 115 GTGATCCTCGTCGTTGCAGAATGGGG-CAGCATATAATATGTAGT-ACACAGCACGA-AT 171
Query 192 GTACATGTGCTCATGGTTCTCCCATTGGTGGTCAGTGTGATGGAGTCGAAGACTGTGACC 251
|||||||||||||||| ||||| |||||||||||||||||| || ||| |||||||||||
Sbjct 172 GTACATGTGCTCATGGCTCTCCTATTGGTGGTCAGTGTGATAGACTCGGAGACTGTGACC 231
Query 252 TTTCTGGCTGTCCACCAAACTCTCATGTTATATGCGATAGAATTGGAGGAAACTTCTGCA 311
||||||| |||||||||| |||||||||||| |||||| |||| || | | ||||||
Sbjct 232 TTTCTGGTTGTCCACCAACCTCTCATGTTATCTGCGATTTAATTCGAAG---CGTCTGCA 288
Query 312 CTTGTGTCCCCAATTGATTTAAATGGTCTCTAATG 346
||||| ||||||||||||| |||||||||||||||
Sbjct 289 CTTGTATCCCCAATTGATTAAAATGGTCTCTAATG 323
> Ahg939797 jgi|Araly1|939797|scaffold_600341.1
Length=326
Score = 239 bits (129), Expect = 1e-62
Identities = 279/346 (81%), Gaps = 31/346 (9%)
Strand=Plus/Plus
Query 15 TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA 74
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct 1 TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAACATTTTCTTCGTTCTTCTCCTAA 60
Query 75 TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT 134
||||||||||||||||| |||||||| ||||||| |||| |||||||| ||||||||| |
Sbjct 61 TTTCTTCATGTCTGATTATGAGGAGTGAAGGTCAGTTTCAATGTAAGACTGTTGCGGATT 120
Query 135 GTGATTCT-CGTGGTTGCAGAG-TAGGAACACATGTAATAT-GCAATGAACACCACATAT 191
||| | || ||| |||||| | | || | ||| | ||| | |||| |||||| ||
Sbjct 121 GTGGT-CTTCGTAGTTGCAAACATGGGGAG-CATCCA-TATTG---TGAAAACCACAAAT 174
Query 192 GTACATGTGCTCATGGT-T-CTCCCATTGGTGGTC-AGTGTGATGGAG-TCGAAGACTGT 247
|| ||||||||||||| | || | |||||||| | |||||| | || ||||||||
Sbjct 175 GTTTATGTGCTCATGGTGTTCTTC--TTGGTGGTATA-TGTGATA-ACCTCCAAGACTGT 230
Query 248 GACCTTTCTGG-C-T-GTCCACCAAACTCTCATGTTATA-TGCGATAGAATTGGAGGAAA 303
|||||||||| | | ||||||||||| ||||||| | |||||| | | ||
Sbjct 231 GACCTTTCTGCACATTGTCCACCAAACAATCATGTT-TCCTGCGATC---T---A--AA- 280
Query 304 CTTCTGCACTTGTGTCCCCAATTGATTTAAATGGTCTCTAATGATT 349
| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 281 CATCTGCACTTGTCACCCCAATTGATTTAAATTGTCTCTAATGATT 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16750303571
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5