BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04047.1

Length=554
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325054 jgi|Araly1|325054|fgenesh1_pm.C_scaffold_6000274           521    2e-147


> Ahg325054 jgi|Araly1|325054|fgenesh1_pm.C_scaffold_6000274
Length=456

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 379/425 (89%), Gaps = 9/425 (2%)
 Strand=Plus/Plus

Query  21   GGAGAAAATTCTTATATGTTTCCTCTTT-ATATTTTTTATCTCTATCCAGCAAATAGACT  79
            ||| |||||||||||||| ||||| |||  ||||||  ||||| || ||| |||||||||
Sbjct  4    GGA-AAAATTCTTATATGCTTCCT-TTTCTTATTTTCCATCTCCATTCAGAAAATAGACT  61

Query  80   CT-TTACTTATATTTAGGCATTTCAACATCCAAATTTCGAATCAACTTGGAGGTAACAAA  138
            || || |||| ||||||||||| ||||||| ||||||||||||| |||| | ||||||||
Sbjct  62   CTATT-CTTACATTTAGGCATTACAACATCGAAATTTCGAATCATCTTGCAAGTAACAAA  120

Query  139  CAGCTTATGATCAATTGTAGATCCGGCAAACA-ACAAGCAACCAAAGTTGATTTTCTTCC  197
            | |||||||||||||||||||||||| ||| | | ||| |||||||||||| ||||||||
Sbjct  121  CTGCTTATGATCAATTGTAGATCCGGTAAAGATA-AAGGAACCAAAGTTGAATTTCTTCC  179

Query  198  CTTTAAT-ACCGTATGGACACTCAAGTTCACAGTTTTCCCAAAAACTTTGATATGGTGCA  256
            | ||||| |  ||||||||| |||| |||||||||| ||||| |||||||||||||||||
Sbjct  180  CGTTAATGA-TGTATGGACAATCAAATTCACAGTTTACCCAAGAACTTTGATATGGTGCA  238

Query  257  ACGTATGGATGGGACCTAACTATGTGCATCATGCGAAGTTTAACGCATTTATTGGGAAAG  316
            || |||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct  239  ACTTATGGATGGGACCTAATTATGTGCATCATGTGAGGTTTAACGCATTTCTTGGGAAAG  298

Query  317  AAAGTTTTATACATGATATATGTGGAGGGAGAAAACCTAACATATGTTTCTGGCAAGCGC  376
            |||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||
Sbjct  299  AAAGTTTTATACATGATATATGTGGAGGTAGGAAACCTAACGTATGTTTTTGGCAAGCGC  358

Query  377  AAGAAGATGGAATTTATGTACGAAATAATGCAACTGGAACCTTTAAGTTAATGTATAAAT  436
            ||||||||||||| |||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct  359  AAGAAGATGGAATATATGTACGCAATAATGCAGCCGGAACCTTTAAGTTAATGTATAAAT  418

Query  437  GGGAT  441
            |||||
Sbjct  419  GGGAT  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20222462170


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5