BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04060.1
Length=2204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487185 jgi|Araly1|487185|fgenesh2_kg.6__319__AT5G04060.1 3162 0.0
Ahg928709 jgi|Araly1|928709|scaffold_301166.1 1232 0.0
Ahg939804 jgi|Araly1|939804|scaffold_600348.1 255 7e-67
> Ahg487185 jgi|Araly1|487185|fgenesh2_kg.6__319__AT5G04060.1
Length=1998
Score = 3162 bits (1712), Expect = 0.0
Identities = 1899/1987 (96%), Gaps = 21/1987 (1%)
Strand=Plus/Plus
Query 149 AAACCATGGGAGGAGGTTATGTGTTGTTTGGTTCGGCTAGATCGGGGCAGATGATAATGG 208
||||||||||||| |||||||||||| |||||||| |||||||| |||| ||||||||
Sbjct 21 AAACCATGGGAGGTGGTTATGTGTTG---GGTTCGGCCAGATCGGGACAGACGATAATGG 77
Query 209 TGGCTCTGGTCCTAATGGTTGGATCATTTTACGCAGGCTCTATCTTCGGAAACAATTCAC 268
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 78 TGGCTCTGGTTCTAATGGTTGGATCATTTTACGCAGGCTCTATCTTCGGAAACAATTCTC 137
Query 269 CTATTTACATTTCCCAA-C--cttcttcttccaattcttcttcttcttctCCATCACAAT 325
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 138 CTATTTACATTTCCCAACCTTCTTCTTCTTCCAATTCTTCTTCTTCTTCTCCATCACAAT 197
Query 326 CTGGTCCATCAAATTTTGCTAACAAAATAGAGCTCACTTACCGGAGAACTTCTGTTTCGA 385
||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||
Sbjct 198 CTGGTCCATCAAATTTTGCTAACAAGATAGAGCTTACTTACCAGAGAACTTCTGTTTCGA 257
Query 386 TCCCTGAGAGTGGGGTGAATGTTTGTCCATTGAAGTTCAATGAGTAT-ATACCTTGTCAC 444
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 258 TCCCTGCGAGTGGGGTGAATGTTTGTCCATTGAAGTTCAATGAGTATAAT-CCTTGTCAC 316
Query 445 AATGTCACGTATGTGCAACAGCTTCTCCCAAGCTTGAATCTTTCTAGAAGAGAAGAGCTT 504
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AATGTCACTTATGTGCAACAGCTTCTCCCAAGCTTGAATCTTTCTAGAAGAGAAGAGCTT 376
Query 505 GAGAGACACTGTCCGCCACTCGAACAGCGTCTGTTTTGTTTGGTTCCTCCGCCTAAAGAT 564
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||
Sbjct 377 GAGAGACACTGTCCGCCACTTGAACAGCGTTTGTTTTGTTTGGTGCCTCCGCCAAAAGAT 436
Query 565 TATAAGATACCAATACGCTGGCCGACTAGCAGAGATTATGTATGGAGAAGCAATGTGAAT 624
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 437 TATAAGATACCAATACGCTGGCCAACTAGCAGAGATTATGTATGGAGAAGCAATGTGAAT 496
Query 625 CATACGCATCTTGCTGAAGTGAAAGGCGGCCAAAATTGGGTGCATGAACAAGGTCAGTTA 684
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 497 CATACGCATCTTGCTGAAGTGAAAGGCGGCCAGAATTGGGTGCATGAACAAGGTCAATTA 556
Query 685 TGGTGGTTCCCTGGTGGTGGTACTCATTTCAAACATGGAGCTCCGGAATACATCCAGAGG 744
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 557 TGGTGGTTCCCTGGTGGCGGTACTCATTTCAAACACGGAGCTCCAGAATACATCCAGAGG 616
Query 745 TTAGGAAACATGACAACTAATGAAACAGGTGACCTTCTTTCAGCTGGGGTTGAACAAGTT 804
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 617 TTAGGAAACATGACAACTAATGAAACAGGTGACCTTCGTTCAGCTGGTGTTGAACAAGTT 676
Query 805 CTTGATGTTGGATGTGGAGTTGCTAGCTTTGCAGCTTATCTTCTTCCTTTAGGTATAAAG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 CTTGATGTTGGATGTGGAGTTGCTAGCTTTGCAGCTTATCTTCTTCCTTTAGGTATAAAG 736
Query 865 ACAATGTCTTTTGCCCCTAAAGATGGTCATGAAAACCAAATCCAGTTTGCATTGGAGAGA 924
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 737 ACAATGTCTTTTGCCCCTAAAGATGGTCATGAAAACCAAATCCAGTTTGCGTTGGAGAGA 796
Query 925 GGAATCCGCGCAATGATCTCTGCCATAGCCACCAAACAAATGCCATATCCCGCGGCCTCG 984
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GGAATCGGCGCAATGATCTCTGCCATAGCCACCAAACAAATGCCATATCCCGCGGCCTCG 856
Query 985 TTTGATATGGTTCACTGTTCAAGATGTCGTGTTGATTGGCATGAAAATGATGGTGTCTTG 1044
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 857 TTTGATATGGTTCACTGTTCAAGATGTCGTGTTGATTGGCATGAAAATGATGGTATCTTG 916
Query 1045 ATGAAAGAGGTTAATCGTCTTCTCCGACCCAATGGATACTTTGTTTACTCGGCACCACCT 1104
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 917 ATTAAAGAGGTTAATCGTCTTCTCCGACCCAATGGATACTTTGTTTATTCAGCACCACCT 976
Query 1105 GCGTACAGAAAGGATAAAGATTTCCCTGTGATTTGGGATAAGTTGGTCAATCTAACTAGC 1164
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 977 GCATACAGAAAGGATAAAGATTTCCCTATGATTTGGGATAAGTTGGTCAATCTAACTACC 1036
Query 1165 GCAATGTGCTGGAAGCTCATTTCCCGAAAGGTACAGACTGCAATATGGGTTAAAGAAGAT 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCAATGTGCTGGAAGCTCATTTCCCGAAAGGTACAGACTGCAATATGGGTTAAAGAAGAT 1096
Query 1225 GACGAGGCTTGCCTTAGGAAGAATGCAGAGCTAGAGCTTATAACTATATGTGGTGTAGAA 1284
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1097 GACGAGGCTTGCCTTAGGAAGAATGCAGAGCTAGAGCTTATAACTATATGTGATGTAGAA 1156
Query 1285 GATGTTTCGAAAGCTTCATGGAAAGTTCCTCTTAGAGACTGTGTGGACATTAGTGAAAAT 1344
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1157 GATGTTTCGAAAGCTTCATGGAACGTTCCTCTTAGAGACTGTGTGGACATTAGTGAAAAC 1216
Query 1345 AGACAACAGAAACCCTCTTCTTTAACTGACCGTCTATCTTCATATCCAACAAGTCTAAGA 1404
| |||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |
Sbjct 1217 ATACAAAAGAAACCCTCTTCTTCAACTGGCCGTCTATCGTCATATCCAACAAGTCTAACA 1276
Query 1405 GAAAAAGGCATCAGCGAAGACGAATTTACATTGGACACAAACTTCTGGAGAGAACAAGTG 1464
|||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1277 GAAAAAGGCATCGGCGAAGATGAATTTGCATTGGACACAAACTTCTGGAGAGAACAAGTG 1336
Query 1465 AATCAGTACTGGGAGTTGATGAATGTTAATAAGACTGAAGTGCGAAATGTGATGGACACA 1524
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 AATCAGTACTGGGAGTTAATGAATGTTAATAAGACTGAAGTGCGAAATGTGATGGACACA 1396
Query 1525 AATGCATTCATTGGTGGATTTGCCGCAGCCATGAACTCATATCCCCTTTGGGTCATGAAC 1584
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1397 AATGCAGCCATTGGTGGATTTGCCGCAGCCATGAACTCATATCCCGTTTGGGTCATGAAC 1456
Query 1585 GTTGTACCTGCTACAATGAACGATACCTTATCCGGAATTTACCAGAGGGGCTTAACCGGT 1644
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1457 GTTGTACCTGCTACGATGAACGATACCTTATCCGGAATTTACCAGAGGGGCTTAACTGGT 1516
Query 1645 GCTTATCATGATTGGTGTGAGCCATTCTCAACATATCCCCGTACTTACGATCTGCTACAC 1704
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1517 GCTTATCATGATTGGTGTGAGCCATTCTCAACGTATCCCCGTACTTACGATCTGCTACAC 1576
Query 1705 GCGGACCATCTCTTCACTCACTATAAAATCTACGGTGAAGGTTGTTTACTAGAGGACATC 1764
||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1577 GCGGACCATCTTTTCGCTCACTATAAAATCCACGGTGAAGGTTGTTTACTAGAGGACATG 1636
Query 1765 ATGCTTGAGATGGACCGCATTATACGCCCTCAGGGATTTATCATTATCAGAGACGAGGAA 1824
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1637 ATGCTTGAGATGGACCGCATTATACGCCCTCAGGGATTCATCATTATCAGAGACGAGGAA 1696
Query 1825 TCAATCGTCTCAAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGTTGAAGCACAT 1884
|||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1697 TCAATCATCTCGAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGTTGAAACACAT 1756
Query 1885 GAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAAGAAATTTTGG 1944
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1757 GAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAAGATATTTTGG 1816
Query 1945 GCAATCCTTTGAAAAAGTCCAC--GTGTAGAAATTCTTTTTTACTTGTCTTGGTTATTAC 2002
|||||| |||||||| || || |||||||||||||||||||||| ||||||||||||
Sbjct 1817 GCAATCGTTTGAAAA--TCTACTTGTGTAGAAATTCTTTTTTACTTCTCTTGGTTATTA- 1873
Query 2003 TAAGAAAAAGAAATTACAGATTACTTTTGTAATGTTTGTTCATTGATTAACTGTAATAGA 2062
| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1874 -A-GAGAAAGAAATTACAGATTACTTTTGTAATGTTTGTTCATTGATTAACCGTAATAGA 1931
Query 2063 TGTCTCCT--T----GTACATGTTTTGTTTCGCAACACACTCTCATAACCAAAACTAGAA 2116
|||||||| | |||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1932 TGTCTCCTAGTCCTTGTACATGTTTTGTTTCGCCACACTCTCTCATAACCAAAACTAGAA 1991
Query 2117 TTAGCCG 2123
|||||||
Sbjct 1992 TTAGCCG 1998
> Ahg928709 jgi|Araly1|928709|scaffold_301166.1
Length=1776
Score = 1232 bits (667), Expect = 0.0
Identities = 1118/1334 (84%), Gaps = 37/1334 (3%)
Strand=Plus/Plus
Query 646 AAA-GGCGGCCAAAATTGGGTGCATGAACAAGGTCAGTTATGGTGGTTCCCTGGTGGTGG 704
||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 438 AAAGGGTGGCCAAAATTGGGTGCATGAGCAAGGTCAGTTTTGGTGGTTCCCTGGTGGTGG 497
Query 705 TACTCATTTCAAACATGGAGCTCCGGAATACATCCAGAGGTTAGGAAACATGACAACTAA 764
||||||||| || ||||||||| | ||||| ||||||||||| || || |||| |||||
Sbjct 498 TACTCATTTTAAGCATGGAGCTGCAGAATATATCCAGAGGTTGGGGAATATGATGACTAA 557
Query 765 TGAAACAGGTGACCTTCTTTCAGCTGGGGTTGAACAAGTTCTTGATGTTGGATGTGGAGT 824
||||||||||||| ||| |||||||||||| | |||||||||||||||||| ||||| ||
Sbjct 558 TGAAACAGGTGACTTTCGTTCAGCTGGGGTGGTACAAGTTCTTGATGTTGGCTGTGGCGT 617
Query 825 TGCT-AGCTTTGCAGCTTATCTTCTTCCTTTAGGTATAAAGACAATGTCTTTTGC-CCCT 882
|| | |||||||| |||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct 618 TG-TGAGCTTTGCCGCTTATCTTCTTCCTTTAGGTATACAGACAATGTCATTTGCTCCC- 675
Query 883 AAAGATGGTCATGAAAACCAAATCCAGTTTGCATTGGAGAGAGGAATCCGCGCAATGATC 942
|||||||||||||||||||| || |||||||||||||| ||||| ||| | || |||||
Sbjct 676 AAAGATGGTCATGAAAACCAGATTCAGTTTGCATTGGAAAGAGGCATCGGTGCTATGATA 735
Query 943 TCTGCCATAGCCACCAAACAAATGCCATATCCCGCGGCCTCGTTTGATATGGTTCACTGT 1002
|| || | ||||||||||||||||| ||||| || ||||||||||| |||||||| |||
Sbjct 736 TCCGCGGTTGCCACCAAACAAATGCCTTATCCTGCAGCCTCGTTTGAGATGGTTCATTGT 795
Query 1003 TCAAGATGTCGTGTTGATTGGCATGAAAATGATGGTGTCTTGA-TGAAAGAGGTTAATCG 1061
|| |||||||||||||||||||||| ||||||||| |||| | | ||||| ||| ||||
Sbjct 796 TCGAGATGTCGTGTTGATTGGCATGCAAATGATGGCATCTT-ACTAAAAGAAGTTCATCG 854
Query 1062 TCTTCTCCGACCCAATGGATACTTTGTTTACTCGGCACCACCTGCGTACAGAAAGGATAA 1121
|||||||||||| ||||||| |||||| || || | ||||| || || ||||| |||||
Sbjct 855 TCTTCTCCGACCAAATGGATTCTTTGTGTATTCATCGCCACCAGCTTATAGAAATGATAA 914
Query 1122 AGATT-TCCCTGTGATTTGGGATAAGTTGGTCAATCTAACTAGCGCAATGTGCTGGAAGC 1180
||| | ||| | |||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 915 AGAGTATCC-TATGATCTGGGATAAGTTGGTCAATCTAACTAGTGCAATGTGCTGGAAGC 973
Query 1181 TCATTTCCCGAAAGGTACAGACTGCAATATGGGTTAAAGAAGATGAC-GAGGCT-TGCCT 1238
|||||||||| ||||||||||||||||||||| ||||||| || || |||| | || ||
Sbjct 974 TCATTTCCCGGAAGGTACAGACTGCAATATGGATTAAAGACGA-GAATGAGG-TGTGTCT 1031
Query 1239 TAGGAAGAATGCAGAGCTAGAGCTTATAACTATATGTGGTGTAGAAGATGTTTCGAAAGC 1298
|||| |||||||||||||| |||| |||| | |||||| ||| |||||||||| |||| |
Sbjct 1032 TAGGCAGAATGCAGAGCTAAAGCTCATAAGTTTATGTGATGTGGAAGATGTTTTGAAACC 1091
Query 1299 TTCATGGAAAGTTCCTCTTAGAGACTGTGTGGACATTAGTG-A-AAATAGACAACAGAAA 1356
|||||||||||| |||| ||||| |||||| | || |||| | ||| ||| | ||| |
Sbjct 1092 ATCATGGAAAGTTACTCTGAGAGATTGTGTGCAAATCAGTGGACAAACAGA-AG-AGAGA 1149
Query 1357 CCCTCTTCTTTAACTGACCGTCTATCTTCATATCCAACAAGTCTAAGAGAAAA-AGGCAT 1415
|||||||||||| |||| ||||| ||| | ||||| | ||||||| |||| ||| ||
Sbjct 1150 CCCTCTTCTTTAGCTGAACGTCTTTCTGCGTATCCGGGGACTCTAAGA-AAAATAGGGAT 1208
Query 1416 CAGCGAAGACGAATTTACATTGGACACAAACTTCTGGAGAGAACAAGTGAATCAGTACTG 1475
||| ||||| |||| ||||| || ||| || ||||||||||||||| ||||| || ||
Sbjct 1209 CAGTGAAGATGAATATACATCAGATACAGTCTACTGGAGAGAACAAGTTAATCACTATTG 1268
Query 1476 G-GAGTTGATGAATGTTAATAAGACTGAAGTGC-GAAATGTGATGGACACAAATGCATTC 1533
| | ||| |||||||| ||| |||||||||| | | |||| |||||||| || ||||||
Sbjct 1269 GCG-GTTAATGAATGTCAATGAGACTGAAGT-CAGGAATGCGATGGACATGAACGCATTC 1326
Query 1534 ATTGGTGGATTTGCCGCAGCCATGAACTCATATCCCCTTTGGGTCATGAACGTTGTACCT 1593
|||||||| ||||| ||||| ||||| || ||||| ||||||| |||||| | ||||||
Sbjct 1327 ATTGGTGGGTTTGCTGCAGCTATGAATTCGTATCCTGTTTGGGTAATGAACATAGTACCT 1386
Query 1594 GCTACAATGAACGATACCTTATCCGGAATTTACCAGAGGGGCTTAACCGGTGCTTATC-A 1652
||||| ||||| |||||||| || ||||||| | |||| ||||||| || |||| || |
Sbjct 1387 GCTACCATGAATGATACCTTGTCTGGAATTTTCGAGAGAGGCTTAAATGGAGCTT-TCCA 1445
Query 1653 TGATTGGTGTGAGCCATTCTCAACATATCCCCGTACTTACGATCTGCTACACGCGGACCA 1712
||||||||||||| | |||||||||||||| || || || ||| |||| || | || ||
Sbjct 1446 TGATTGGTGTGAGGCGTTCTCAACATATCCTCGCACGTATGATTTGCTGCATTCCGATCA 1505
Query 1713 TCTCTTCACTCACTATAA-AAT--CTACGGTGAAGGTTGTTTACTAGAGGACATCATGCT 1769
| ||||| |||| || || || |||||| || |||||||| |||||||| ||||||||
Sbjct 1506 TGTCTTCTCTCATTACAACAAAAGCTACGGAGATGGTTGTTTGCTAGAGGATATCATGCT 1565
Query 1770 TGAGATGGACCGCATTA-TACGCCCTCAGGGATTTATCATTATCAGAGACGAGGAATCAA 1828
||||||||||||||| | | ||||||||||| |||||||| || || ||||||||||| |
Sbjct 1566 TGAGATGGACCGCAT-AGTTCGCCCTCAGGGGTTTATCATAATAAGGGACGAGGAATCTA 1624
Query 1829 TCGTCTCAAG-AGTCCGAGACTTGGCTCCTAAGTTCCTT-TGGGAAGTTGAAGCACATGA 1886
|| ||||||| | ||||||||||||||||||| || || |||||||| ||| | |||||
Sbjct 1625 TCATCTCAAGGA-TCCGAGACTTGGCTCCTAAATTA-TTGTGGGAAGTGGAAACTCATGA 1682
Query 1887 GCTTCAAGACAAATACAAGAAGA---CAGAAACTGTTCTATTTTGCAGAAAGAAATTTTG 1943
|||| || ||||| ||||||||| |||| |||||| | ||||||||||||| ||| ||
Sbjct 1683 GCTTGAAAACAAAGACAAGAAGATGACAGAGACTGTTTTGTTTTGCAGAAAGAGATTCTG 1742
Query 1944 GGCAATCCTTTGAA 1957
||| ||| ||||||
Sbjct 1743 GGCTATCATTTGAA 1756
Score = 193 bits (104), Expect = 6e-48
Identities = 278/357 (78%), Gaps = 31/357 (9%)
Strand=Plus/Plus
Query 173 TGTTTGGTTCGGCTAGATCGGGGCAGATGATAATGGTGGCTCTGGTCCTAATGGTTGGAT 232
|||||||| | || ||||| ||||||| ||||||||| ||||| || || ||||||||||
Sbjct 44 TGTTTGGTGCAGCGAGATCAGGGCAGACGATAATGGTTGCTCTCGTTCTTATGGTTGGAT 103
Query 233 CATTTTACGCAGGCTCTATCTTCGGAAACAATTCACCTATTTACATTTCCCAACcttctt 292
|||||||| | |||||| ||||||| ||| | ||| | ||||| | | || |
Sbjct 104 CATTTTACACTGGCTCTCTCTTCGG-AACCA---ACC-A-ACCCATTT----A-CGTC-T 151
Query 293 cttccaattcttcttcttcttctCCATCACAATCTGGTCCATCAAATTTTGCTAACAAAA 352
| | ||| | ||||||| || || | | ||| | | |||| ||||| ||||||
Sbjct 152 C-T-CAA--C--CTTCTTC-TCACCCT-GC-TTCT--T-C--CAAA-TTTGCAAACAAAG 196
Query 353 TAGAGCTCACTTACCGGAGA--ACTTCTGTTTCGATCCCTGAGAGTGGGGTGAATGTTTG 410
| | ||| ||||| ||||| || || || || ||||| | |||| ||||||| ||
Sbjct 197 TCGCGCTTACTTATAGGAGATTACCACT-AGTC-ATACCTGAAACTGGGATGAATGTGTG 254
Query 411 TCCATTGAAGTTCAATGAGTATATACCTTGTCACAATGTCACGTATGTGCAACAGCTTCT 470
||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 255 TCCATTGGAGTTCAATGAGTATATCCCTTGTCACAATGTCACTTATGTGCATCAGCTGCT 314
Query 471 CCCAAGCTTGAATCTTTCTAGAAGAGAAGAGCTTGAGAGACACTGTCCGCCACTCGA 527
|||||||||||||||||||||||||||||||| || || || || |||||||||||
Sbjct 315 TCCAAGCTTGAATCTTTCTAGAAGAGAAGAGCTCGAAAGGCATTGCCCGCCACTCGA 371
> Ahg939804 jgi|Araly1|939804|scaffold_600348.1
Length=522
Score = 255 bits (138), Expect = 7e-67
Identities = 158/167 (95%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 1815 AGACGAGGAATCAATCGTCTCAAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGT 1874
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGACGAGGAATCAATCATCTCAAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGT 417
Query 1875 TGAAGCACATGAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAA 1934
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGAAACACATGAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAA 477
Query 1935 GAAATTTTGGGCAATCCTTTGAAAAAGTCCAC--GTGTAGAAATTCT 1979
|| ||||||||||||| |||||||| || || |||||||||||||
Sbjct 478 GATATTTTGGGCAATCGTTTGAAAA--TCTACTTGTGTAGAAATTCT 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82960553610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5