BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04070.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487186 jgi|Araly1|487186|fgenesh2_kg.6__320__AT5G04070.1 2050 0.0
Ahg902410 jgi|Araly1|902410|Al_scaffold_0004_3060 691 0.0
Ahg893505 jgi|Araly1|893505|Al_scaffold_0006_1501 544 9e-154
Ahg892273 jgi|Araly1|892273|Al_scaffold_0006_269 219 6e-56
Ahg939631 jgi|Araly1|939631|scaffold_600175.1 113 3e-24
> Ahg487186 jgi|Araly1|487186|fgenesh2_kg.6__320__AT5G04070.1
Length=1452
Score = 2050 bits (1110), Expect = 0.0
Identities = 1363/1477 (92%), Gaps = 49/1477 (3%)
Strand=Plus/Plus
Query 30 AAACCCATCGATTATTCCCCGGAAAAAGCATCTAATCCTTGCATTCGGCTCTGATTTCTT 89
||| |||||||||||||||| ||||||| || | ||||||| |||||||||| |||||||
Sbjct 1 AAAGCCATCGATTATTCCCCAGAAAAAGTATTTGATCCTTGTATTCGGCTCTAATTTCTT 60
Query 90 CACGAGTTCGCAAG-ATCAAGTTGTTAGTCTACAGATTTTTGTTCAGGTACATAAATTTG 148
||||||||||| || ||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 61 CACGAGTTCGC-AGTATCAAGTTGTTAGTCTACAGATTCTTGTTCAGGTACATGAA-TT- 117
Query 149 ATGGAGAATTTGAAGGAGGCTTTGCGTTTTATCTGCTCATCTAATTTCTGGAGGATGG-T 207
| | | |||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 118 -T---G-A--TGAAGGAGGCGTTGCGTTTTATATGCTCATCTAATTTCTGGAGGATGGCT 170
Query 208 TCTGTTTTGGAACATTGCCCTCCTTTTTTCGTACTTTCAATTGCTTAAAAAGAGTATCTT 267
| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 171 T-TGTTTTGGAACATTGCCCTCCTTTTTTCTTACTTCCAATTGCTTAAAAAGAGTATCTT 229
Query 268 TGCCCCCAAATCAAGTTCCTCTTCTTCTTGCTCCAAATTCAATCATTCACACACACCTGT 327
|| | | |||||||||| | | |||||||||||||||| ||||||||||||||||||| |
Sbjct 230 TGGCTCAAAATCAAGTT-C-C-TCTTCTTGCTCCAAATCCAATCATTCACACACACCTAT 286
Query 328 TTGTGTTATAACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTTTCAAG 387
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 287 TTGTGTTATCACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTCTCAAG 346
Query 388 GAAAGGTTTCTACGTTGTTCTTGTTGGACGGTCCTCGCACTTACTATCAAAGACCTTGAG 447
|||||||||||||||||||||||||||| | || || ||||||||||||||||||||||
Sbjct 347 GAAAGGTTTCTACGTTGTTCTTGTTGGAAGATCATCCCACTTACTATCAAAGACCTTGAA 406
Query 448 TGATATTAAGAGGCAGAACGAGGATGCCAAACTCAAAGCTTTTGAAGTTGACATGTCGTC 507
|||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 407 TGATATTAAGAGGCAGAATGAGAATGCCCAACTCAAAGCTTTTGAAGTTGACATTTCGTC 466
Query 508 TTTTCAATTAGTTTTAAAGTTCAGAAGCTCTCTAGAGCAATGGCTTTTTGAGTCAGATTT 567
|||||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 467 TTTTCAATCAGTTTTCAAGTTCAGAAACTCTCTAGAGCAATGGCTTTTTGAATCAGATTT 526
Query 568 GCATTCTTCAGTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTAGTCGTCC 627
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 527 GCATTCTTCAGTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTTGTCGGCC 586
Query 628 AACTGTTGAAGGCTTTGACAGGATGATTGCTACAAATTATGTCGGCGCTTTCT-CTTTGA 686
||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||
Sbjct 587 AACCGTTGAAGGCTTTGACAGGATGATGGCTACAAATTATGTCGGCGCTTT-TACTTTGA 645
Query 687 CCAAACTTCTCTTACCGCTCCTGAGAAACAGCCCTGTGCCTTCAAGAGTAGTGAATGTTA 746
||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct 646 CCAAACTTCTCTTACCGCTCCTGAGAAACAGCCTTGTGCCTTCACGAGTTGTGAATGTTA 705
Query 747 CATCTTTTACACATCGTTCTGCTTTTACTGGGAGGTTTGACATGGATTCTGTTACTGGAG 806
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 CATCTTTTACACATCGTTCTGCTTTTAGTGGGAGGTTTGACATGGATTCTGTTACTGGAG 765
Query 807 TGAACTTTTCAAGATCAAAGCAATATCCTTGTGCTAGGATCTATGAGTATTCTAAATTAT 866
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 766 TGAACTTTTCGAGATCAAAGCAATATCCTTGTGCTAGGATCTATGAGTATTCTAAATTGT 825
Query 867 GCCTTCTACTTTTCTCGTACGAGCTGCATAGACAGCTTCACCTCATGGATGATTCACATC 926
|||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 826 GCCTTCTACTTTTCTCATACCAGCTGCATAGACAGCTTCGCCTCACGGATGATTCACATC 885
Query 927 ACATCTCTGTTGTAGCGGTAGATCCAGGAGCAGTAAAAACAAACATAATGCATGAGCTTC 986
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACGTCTCTGTTGTAGCGGTAGATCCAGGAGCAGTAAAAACAAACATAATGCATGAGCTTC 945
Query 987 CTTCATATATACAAGTCATTGCGTTTTGTGGTCTCAAGATTCTTGGACTGATGCAGTCTC 1046
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 CTTCATATATTCAATTCATTGCGTTTTGTGGTCTCAAGATTCTTGGACTGATGCAGTCTC 1005
Query 1047 CAGAGGATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCACCTGAAATATCAGGCA 1106
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1006 CAGAGGATGCAGCTGAATCGGTCATTGATGCTGCTGTAGCTCCACCTGAAATATCAGGCA 1065
Query 1107 AATATTTCTTTGGCGG---G---AGGACCATTGAATCTTCAACACTTTCCAGTGACCCGA 1160
|||||||||||||||| | |||||||||||||||||| | ||||| |||||||||
Sbjct 1066 AATATTTCTTTGGCGGAAAGGGGAGGACCATTGAATCTTCAGCGCTTTCTGGTGACCCGA 1125
Query 1161 AAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAAACTC 1220
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1126 AAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAAGCTC 1185
Query 1221 ACACTTGAAGATCAAAAAGCTTCTAGTTGTTGCTTGCTAATGACATAATCCTAGGATCCA 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ACACTTGAAGATCAAAAAGCTTCTAGTTGTTGCTTGCTAATGACATAATCCTAGGATCCA 1245
Query 1281 AACTGTATCACCTTCTGGTTTCTTGTATAAAATCAGTTTTTGTGTTTAGTATTCCC-T-T 1338
||| | |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1246 AAC-----C---TTCTGGTTTCTTGTATAAAATCAGTTTTTGTGTTTAGTATTCCCGTCT 1297
Query 1339 -GTTAGCAT----C--T-A--CGTAGATTCTTCTTTTATAA-TTCTTTTTGTTCAAATTT 1387
|||||||| | | | || ||||||||||| || || ||||||| ||||| ||||
Sbjct 1298 TGTTAGCATATTTCAGTGAAACGAAGATTCTTCTTCTAAAAATTCTTTT-GTTCAGATTT 1356
Query 1388 CTTA-TTGTTACCAAAGGAAATTTTTGCTTAGGG-ATTTGTTGTCAACTTTTGAGCCATT 1445
| || ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1357 CGTAATTGTTACCAAAAGAAAATTTTGCTTAGGGGATTTGTTGTCAACTTTTGAGCCATT 1416
Query 1446 CAACTTAAAAGTATGATTAGACCAACATTCTGCTTTT 1482
|||| |||| |||||||||||||||||||||||||||
Sbjct 1417 CAACATAAA-GTATGATTAGACCAACATTCTGCTTTT 1452
> Ahg902410 jgi|Araly1|902410|Al_scaffold_0004_3060
Length=492
Score = 691 bits (374), Expect = 0.0
Identities = 452/489 (92%), Gaps = 8/489 (2%)
Strand=Plus/Plus
Query 159 TGAAGGAGGCTTTGCGTTTTATCTGCTCATCTAATTTCTGGAGGATGG-TTCTGTTTTGG 217
|||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 11 TGAAGGAGGCGTTGCGTTTTATATGCTCATCTAATTTCTGGAGGATGGCTT-TGTTTTGG 69
Query 218 AACATTGCCCTCCTTTTTTCGTACTTTCAATTGCTTAAAAAGAGTATCTTTGCCCCCAAA 277
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| | | |||
Sbjct 70 AACATTGCCCTCCTTTTTTCTTACTTCCAATTGCTTAAAAAGAGTATCTTTGGCTCAAAA 129
Query 278 TCAAGTTCCTCTTCTTCTTGCTCCAAATTCAATCATTCACACACACCTGTTTGTGTTATA 337
||||||| | | |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 130 TCAAGTT-C-C-TCTTCTTGCTCCAAATCCAATCATTCACACACACCTATTTGTGTTATC 186
Query 338 ACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTTTCAAGGAAAGGTTTC 397
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 187 ACTGGTGCTACTTCGGGACTTGGTAAGGCCACTGCGTTTGCTCTATCAAGGAAAGGTTTC 246
Query 398 TACGTTGTTCTTGTTGGACGGTCCTCGCACTTACTATCAAAGACCTTGAGTGATATTAAG 457
|||||||||| ||||| | || || |||||||||||||||||||||||||||||||||
Sbjct 247 TACGTTGTTC---TTGGAAGATCATCCCACTTACTATCAAAGACCTTGAGTGATATTAAG 303
Query 458 AGGCAGAACGAGGATGCCAAACTCAAAGCTTTTGAAGTTGACATGTCGTCTTTTCAATTA 517
|||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
Sbjct 304 AGGCAGAATGAGAATGCCCAACTCAAAGCTTTTGAAGTTGACATTTCGTCTTTTCAATCA 363
Query 518 GTTTTAAAGTTCAGAAGCTCTCTAGAGCAATGGCTTTTTGAGTCAGATTTGCATTCTTCA 577
||||| |||||||||| ||||||||||||||||||||| || |||||||| | |||||||
Sbjct 364 GTTTTCAAGTTCAGAAACTCTCTAGAGCAATGGCTTTTAGATTCAGATTTACGTTCTTCA 423
Query 578 GTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTAGTCGTCCAACTGTTGAA 637
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 424 GTCCAGCTTTTGGTGAACAATGCTGGAATACTGGCAACATCTAGTCGGCCAACCATTGAA 483
Query 638 GGCTTTGAC 646
|||||||||
Sbjct 484 GGCTTTGAC 492
> Ahg893505 jgi|Araly1|893505|Al_scaffold_0006_1501
Length=1047
Score = 544 bits (294), Expect = 9e-154
Identities = 788/1018 (77%), Gaps = 67/1018 (7%)
Strand=Plus/Plus
Query 203 ATGGTTCTGTTTTGGAACATTGCCCTCCTTTTTTCGTACT-TTCAATTGCTTA-A-AAAG 259
||||||||||| |||| || || || ||| ||| || | |||||||||||| | |||
Sbjct 1 ATGGTTCTGTTCTGGAGTATCGCTCTTGTTTCTTCTTA-TCTTCAATTGCTTAGAGCAAG 59
Query 260 AGTATCTTTGCCCCCAAATCAAGTTCCTCTTCTTCTTGCTCCA--AATTCA-ATCATTCA 316
| |||||| | | ||| | | |||| | ||||||||||| ||| || || || |
Sbjct 60 -G-GTCTTTGGCTCAAAAGCTA-CTCCT-AT-TTCTTGCTCCATCAATCCACATAATGGA 114
Query 317 -C-AC-ACACCTGTTTGTGTTATAACTGGTGCTACTTC-GGGACTTGGTAAGGCCACTGC 372
| | | ||| |||||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 115 TCTTCGAGACCCATTTGTGTTATCACTGGTGCTACTTCTGGG-CTTGGTAAGGCCACTGC 173
Query 373 GTTTGCTCTTTCAAG-GAAAGGTTTCTACGTTGTTCTTGTTGGACGGTCCTCGCA-CTTA 430
||||||||| | || |||||||||||||||||||||||||||||||||||| || |||
Sbjct 174 ATTTGCTCTTGC-AGAGAAAGGTTTCTACGTTGTTCTTGTTGGACGGTCCTCTCAGCTT- 231
Query 431 CTATCAAAGACCTTGA-GTGATATTAAGAGGCA-GAACGAGGATGCCAAACTCAAAGCT- 487
|| ||| |||| |||| | || ||||||| || |||| | |||||| ||||||| | |
Sbjct 232 CTTTCAGAGACATTGAAG-GAAATTAAGAA-CAAGAACAAAGATGCCCAACTCAA-G-TA 287
Query 488 TTT-GAAGTTGACATGTCGTCTTTTCAATTAGTTTTAAAGTTCAGAAGCTCTCTAGAGCA 546
||| |||| ||||||||| | |||| ||| | | || ||||| | || ||||||||||||
Sbjct 288 TTTCGAAGCTGACATGTCTTGTTTTGAATCAATCTTCAAGTTGAAAAACTCTCTAGAGCA 347
Query 547 ATGGCTTTTTGAGTCAGATTTGCATTCTTC-AGTCCAGCTTTTGGTGAACAATGCTGGAA 605
|||||| | || ||||| || ||| |||| | || |||||||||||||||||||||| |
Sbjct 348 ATGGCTATCGGACTCAGAGTTACATCCTTCGATTC-AGCTTTTGGTGAACAATGCTGGGA 406
Query 606 TACTGGCAACATCTAGTCGTCCAACTGTTGAAGGCTT-TGACAGGATGATTGCTACAAAT 664
|| ||||||| |||||||| ||||| |||| || || |||||||||||||||||||||
Sbjct 407 TATTGGCAACTTCTAGTCGACCAACCATTGATGG-TTATGACAGGATGATTGCTACAAAC 465
Query 665 TATGTCGGCGCT-TTCTCTTTGACCAAACTTCTCTTACCGCTCCTGAGAAACAGCC-CTG 722
||| | || || |||||||||||||||||||| || || || |||| ||| ||| | |
Sbjct 466 TATATTGGT-CTATTCTCTTTGACCAAACTTCTTTTGCCACTTCTGAAAAATAGCTAC-G 523
Query 723 TGCCTTCAAGAGTAGTGAATGTTACATCTTTTACACATCGTTCTGCTTTTACTGGGAGGT 782
| |||||| | || || || ||||||||||| ||||||||||| ||||| | | | ||
Sbjct 524 TTCCTTCACGGGTCGTTAACGTTACATCTTTCACACATCGTTCAGCTTTCATTCAAAAGT 583
Query 783 TTGACATGGATTCTGTTACTGGAGTGAACTTTT-CAAGATCAAAGCAATATCCTTGTGCT 841
| ||| ||| ||||| |||||||| | |||| | | |||||| ||||||||||| |||
Sbjct 584 TCAACAAGGACTCTGTAACTGGAGT-ATGTTTTTCTACATCAAACCAATATCCTTGCGCT 642
Query 842 AGGATCTATGAGTATTCTAAATTATGCCTTCTACTTTTCTCGTACGAGCTGCATAGACAG 901
| ||||| ||||||||||||||||| ||| |||| ||||| || || |||| ||||||
Sbjct 643 CGAATCTACGAGTATTCTAAATTATGTCTTGTACTGTTCTCATATGAATTGCACAGACAG 702
Query 902 CTTCACCTCATGGATGATTCACATCACATCTCTGTTGTAGCGG-TAGATCCAGGAGCAGT 960
|||| ||| | || || |||| || ||||||| |||| | | ||||||||| ||
Sbjct 703 CTTCGGCTCTTAGACGACTCACGCCATGTCTCTGTAATAGCTGCT-GATCCAGGATTTGT 761
Query 961 AAAAACAAACATAATGC-ATGAGCTTCCTTCATATATACAAGTC-ATTGCGTTT-TGTGG 1017
||||| || |||||| | |||||||||| || ||| | || || | |||| | |||
Sbjct 762 GAAAACGAATATAATGAGA-GAGCTTCCTTGTTACATA-ACTTCCATGGTGTTTCT-TGG 818
Query 1018 TCT-CAAGA-TTCTTGGACTGA-TGCAGTCTCCAGAGGATGCAGCTGAATCTGTCATTGA 1074
|| || || ||||||| || | |||| || ||||| |||| |||||||||| |||| ||
Sbjct 819 -CTTCA-GAATTCTTGGCCT-ACTGCAATCCCCAGATGATGGAGCTGAATCTATCATCGA 875
Query 1075 TGCTGCTTTAGCTC-CACCTGAAATATCAGGCAAATATT-TCTTTGGCGG----G-A-GG 1126
||| |||||| | | |||| |||| |||||| || | | ||||| || | | ||
Sbjct 876 TGCCGCTTTATC-CACACCGGAAACATCAGGTGCTTACTAT-TTTGGAGGAAAAGGAAGG 933
Query 1127 ACCATTGAATCTTCAACAC-TTTCCAGTGACCCGAAAA-TGGCTAAGGAACTTTGGGA 1182
||||||||||| ||| || |||| || ||||||||| || |||| |||| |||||
Sbjct 934 ACCATTGAATCATCA-CAAGTTTCTAGAGACCCGAAACGTG-CTAAACAACTCTGGGA 989
> Ahg892273 jgi|Araly1|892273|Al_scaffold_0006_269
Length=315
Score = 219 bits (118), Expect = 6e-56
Identities = 170/192 (89%), Gaps = 15/192 (8%)
Strand=Plus/Plus
Query 1052 GATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCA-C-C-------TGAAATATCA 1102
||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 124 GATGCAGCTGAATCTGTCATTGATGCTGCTTTAGCTCCACCTCTAAGATGTGAAATATCA 183
Query 1103 GGCAAATATTTCTTTGGC-G---GGAG--GACCATTGAATCTTCAACACTTTCCAGTGAC 1156
||||||||||| ||||| | || | |||||||||||||||| ||||||||||||||
Sbjct 184 TGCAAATATTTCATTGGCAGAAAGGGGCAGACCATTGAATCTTCAGCACTTTCCAGTGAC 243
Query 1157 CCGAAAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTAACGAATTGCAGCAA 1216
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 244 CAGAAAATGGCTAAGGAACTTTGGGACACATCATGTCTCATATTTGACGAATTGCAGCAA 303
Query 1217 ACTCACACTTGA 1228
|||||||||||
Sbjct 304 GCTCACACTTGA 315
> Ahg939631 jgi|Araly1|939631|scaffold_600175.1
Length=232
Score = 113 bits (61), Expect = 3e-24
Identities = 109/129 (84%), Gaps = 15/129 (12%)
Strand=Plus/Plus
Query 143 AATT-TGATGGAGAATTTGAAGGAGGCTTTGCGTTTTATCTGCTCATCTAATTTCTGGAG 201
|||| ||||||||||| ||||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 14 AATTATGATGGAGAATCTGAAGGATGCTTTACGTTTTATCTGCTCATGTTATTTCTGGAG 73
Query 202 GATGG-TTCTGTTTTGGAACATTGCCCTCCTTTTTTCGTACTTTCAATTGCTTAAAAAGA 260
||||| || ||||||||||||||| || | | ||||||||||||||||||||
Sbjct 74 GATGGCTT-TGTTTTGGAACATTG----CC------C-T-CTTTCAATTGCTTAAAAAGA 120
Query 261 GTATCTTTG 269
|||||||||
Sbjct 121 GTATCTTTG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5