BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04080.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939806 jgi|Araly1|939806|scaffold_600350.1                        364    3e-100


> Ahg939806 jgi|Araly1|939806|scaffold_600350.1
Length=239

 Score =  364 bits (197),  Expect = 3e-100
 Identities = 211/217 (97%), Gaps = 3/217 (1%)
 Strand=Plus/Plus

Query  94   TCCATACTTTTGAGAAGATGCAGGACATGAGAGATCAAAATCCTCCACAAGGATATCCAG  153
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  4    TCCATACTTTTGAGAAGATGCAGGACATGAGAGATCAAACTCCTCCTCAAGGATATCCAG  63

Query  154  CTGCAGAACAAGTATCTGAACAGCCTGGACA--A-GACAAGAAGAAGAAGAAACCACGGT  210
            |||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||||
Sbjct  64   CTGCAGAACAAGTATCGGAACAGCCTGGACAGGAGGACAAGAAGAAGAAGAAACCACGGT  123

Query  211  TTTTCGAGACAAAGCAGAAAGGAGACAGAGGCTTCATTGAAGGATGTCTCTTTGCACTAT  270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  124  TTTTCGAGACAAAGCAGAAAGGAGACAGAGGCTTCATTGAAGGATGTCTCTTTGCACTAT  183

Query  271  GCTGCTGCTGGATTTGTGAAATGTGTTTCTAAGGAAA  307
            |||||||||||||||||||||||||||||||||||||
Sbjct  184  GCTGCTGCTGGATTTGTGAAATGTGTTTCTAAGGAAA  220



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5