BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04090.2
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2 1504 0.0
Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1 322 4e-87
> Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2
Length=1188
Score = 1504 bits (814), Expect = 0.0
Identities = 1107/1238 (89%), Gaps = 61/1238 (5%)
Strand=Plus/Plus
Query 15 ACGATTTGCTTTCTGATTCGAGTCTTGAGGTTTCTTGGGAACAGGATCGCTTCTACAGAT 74
||||||||||||| |||||||||||| ||||||||||||| |||| ||||| | ||
Sbjct 1 ACGATTTGCTTTCGGATTCGAGTCTTCAGGTTTCTTGGGAGTTGGAT-ACTTCTTCTGAC 59
Query 75 ATTTCA--CCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGCGAAGATATACAACTGG 132
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 A-GGAAGGGCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGTGAAGATATACAACTGG 118
Query 133 TTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGACA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 TTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTGGACA 178
Query 193 CTCTTCTAGAACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTG 252
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CTCTACTAGAGCAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTG 238
Query 253 AAGAAGAGAACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGA 312
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGAAGAGAACCGGGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGA 298
Query 313 TAATGGAATATAACGAA-CTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCA 371
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAATGGAATATAAC-AAGCTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCA 357
Query 372 ACT-GCAGGGGCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCACCAATGAATCAGCA 430
|| | |||||||||||| | ||||||||||||||||||||||||| |||||||||| ||
Sbjct 358 ACCAG-AGGGGCTTCTGTCCAAAACAGGAATGGTTCTCATGTTCCATCAATGAATCACCA 416
Query 431 ACAATTACT-CTATGAACGCAAGGAAC-CAGATCAATCCTCTCCTAATCTGTCAAGTCCA 488
||||||| | ||||||||||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 417 ACAATTA-TGCTATGAACGCAAGGA-CTCAGATCAATCCTCTCTTAATCTGTCAAGTCCA 474
Query 489 TACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTATGTGGACTTTTCATCC 548
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 475 TACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTCTGTGGAATTTTCAACC 534
Query 549 CATTCTAGAAGAGTTGATCCTTCACCAAACTCGCTCTCCTTGCAGGCCACAAATATGCCT 608
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 535 CATTCTAGAAGAGTTGATCCTCCACCAAACTCGCTCTCCGTGCAGGCCACAAATATGCCT 594
Query 609 TTGATGCAAGGAATGATCAAGTCTGAGACTGCATAT-CAAAACTGTGCTCCATACATGTA 667
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 595 TTGATGCAAGGAATGATCAAGTCTGAGACTGCATATTCAAA-CTGTGCTCCGTACATGTA 653
Query 668 TGGTGGTGAAGCACAGTCCACAGTTGGAGATG-TCACCATCGCATCTTTCAGCAATGATT 726
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||
Sbjct 654 TGGTGGTGAAGCACAGTCCACAGTTGGAGATGCTC-CCATTGCATCTTTCAGCAATGATT 712
Query 727 CCAGCAACCAATCCCTGAATGATCCTCTTGTCGATCCAGATGCTCCTACATTTGGCTCGT 786
|||||||||||||||| |||||||| || | | | || | | ||
Sbjct 713 CCAGCAACCAATCCCTCAATGATCCA-TT-T-G-----G---CT--T-C-TT-------- 749
Query 787 TAGGACAAATTCCTCAGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAGTT 846
||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 750 -AGGACAACTACCTCGGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAATT 808
Query 847 CAGATATTCTGGAGAGCTACGAGGGATCACCGTTCCTATTGGCTGATGCTGAAAATTTCC 906
|||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 809 CAGAGATTCTGGAGAGCTACGATAGATCACCATTCCTATTGGCTGATGCGGAAAATTTCT 868
Query 907 TGGACTCTAGCGAAAGGGTAGAACATCAAGGAGACCACGAAAGATTGAGGACCATATCAT 966
|||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |
Sbjct 869 TGGACTCTAGTGAAAGGGTAGAACCTCAAGGAGACCGCGAAAGATTGGGGACCATATC-T 927
Query 967 CA-GGCTTCAGTTACGAAAACTTCC-GAAGCAATTAGGTTTATTACACATGGAACTTCGT 1024
| |||||||| ||||||||| || || ||| ||||||||| |||| ||||| ||||
Sbjct 928 GAAGGCTTCAGCTACGAAAACCTCAAGA-GCATTTAGGTTTACTACATATGGAGCTTC-- 984
Query 1025 AGTCATGCTTTTACGTCTGCAACTACTTGCAGGATTTAATCCCATGATCAGTGTACATAG 1084
| | | | | | | |||||||||||||| |||| |||||||||||||||||| ||
Sbjct 985 A--C--G-T----C-T-T-CAACTACTTGCAGGGTTTAGTCCCATGATCAGTGTACAGAG 1032
Query 1085 ATATTCTTACCTTTCGAAAGACAATTTTGGGGTTCAGG-GTGATTACTAATATTATTATT 1143
|||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||
Sbjct 1033 ATATTCTTACCTTTCGAAAGACAATTTTTGGGTG--GGAGTGAATACTAATATTATTATT 1090
Query 1144 CTCAAGTGTAGAGAAATTTGGTTTTTAGTAATAAATATTTAAGAACCTGTTGATTTTAAT 1203
||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||| ||
Sbjct 1091 CTCAAGTGTAGAGAAATTTGGTTTTTATTAATAAATATTTAAGCAGCAGTTGATTTTGAT 1150
Query 1204 TGCATCATTGTAGGATATTCGATTTTGATTGTATAATC 1241
|| ||||||||| ||| || ||||||||||||||||||
Sbjct 1151 TGTATCATTGTATGATTTTGGATTTTGATTGTATAATC 1188
> Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1
Length=1317
Score = 322 bits (174), Expect = 4e-87
Identities = 301/361 (83%), Gaps = 14/361 (4%)
Strand=Plus/Plus
Query 84 ATGTCAAGTTTAACAGTGAGAAGGGTATCGCG-CGAAGATATACAACTGGTTCAGAATCT 142
||||||||| | |||||||| |||| || || | ||||||||||||| ||||| || ||
Sbjct 123 ATGTCAAGTGGATCAGTGAGACGGGTTTCACGTC-AAGATATACAACTCGTTCAAAACCT 181
Query 143 AATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGACACTCTT-CTAG 201
|| ||||||||||| || ||||||||||| |||||||||||||| || ||| || ||||
Sbjct 182 TATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTAGATACT-TTACTAG 240
Query 202 AACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGA 261
| |||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 241 AGCAGGCTAAAATCGAGCCTGGCTTCACAGAGCTAGTTTGGCAGAAGCTTGAAGAAGAGA 300
Query 262 ACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAAT 321
| || || ||||||||||| || ||||| ||||| ||||| || |||||||||||||| |
Sbjct 301 ATCGGGAGTTTTTCAAGGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAGT 360
Query 322 AT-AACGAACT-GCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACTGCAGG 379
| ||| || | ||||||||||||| | |||||||||| |||||||||||||||| ||
Sbjct 361 -TCAAC-AAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTG--GG 416
Query 380 G--GCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCAC-CAATGAATCAGCAACAATT 436
| ||||| || | ||| | |||||||||||| ||| | ||||||||||| |||||||
Sbjct 417 GTTGCTTCCGTCCAAAATACTAATGGTTCTCATATTC-ATTCAATGAATCAGAAACAATT 475
Query 437 A 437
|
Sbjct 476 A 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5