BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04090.2 Length=1263 Score E Sequences producing significant alignments: (Bits) Value Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2 1504 0.0 Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1 322 4e-87 > Ahg487187 jgi|Araly1|487187|fgenesh2_kg.6__321__AT5G04090.2 Length=1188 Score = 1504 bits (814), Expect = 0.0 Identities = 1107/1238 (89%), Gaps = 61/1238 (5%) Strand=Plus/Plus Query 15 ACGATTTGCTTTCTGATTCGAGTCTTGAGGTTTCTTGGGAACAGGATCGCTTCTACAGAT 74 ||||||||||||| |||||||||||| ||||||||||||| |||| ||||| | || Sbjct 1 ACGATTTGCTTTCGGATTCGAGTCTTCAGGTTTCTTGGGAGTTGGAT-ACTTCTTCTGAC 59 Query 75 ATTTCA--CCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGCGAAGATATACAACTGG 132 | | |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 60 A-GGAAGGGCCATGTCAAGTTTAACAGTGAGAAGGGTATCGCGTGAAGATATACAACTGG 118 Query 133 TTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGACA 192 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 119 TTCAGAATCTAATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTGGACA 178 Query 193 CTCTTCTAGAACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTG 252 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTCTACTAGAGCAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTG 238 Query 253 AAGAAGAGAACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGA 312 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 AAGAAGAGAACCGGGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGA 298 Query 313 TAATGGAATATAACGAA-CTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCA 371 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TAATGGAATATAAC-AAGCTGCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCA 357 Query 372 ACT-GCAGGGGCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCACCAATGAATCAGCA 430 || | |||||||||||| | ||||||||||||||||||||||||| |||||||||| || Sbjct 358 ACCAG-AGGGGCTTCTGTCCAAAACAGGAATGGTTCTCATGTTCCATCAATGAATCACCA 416 Query 431 ACAATTACT-CTATGAACGCAAGGAAC-CAGATCAATCCTCTCCTAATCTGTCAAGTCCA 488 ||||||| | ||||||||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 417 ACAATTA-TGCTATGAACGCAAGGA-CTCAGATCAATCCTCTCTTAATCTGTCAAGTCCA 474 Query 489 TACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTATGTGGACTTTTCATCC 548 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || Sbjct 475 TACCTCAATGGAGGCTCAGCAATTAACACAAATATACCTTCTTCTGTGGAATTTTCAACC 534 Query 549 CATTCTAGAAGAGTTGATCCTTCACCAAACTCGCTCTCCTTGCAGGCCACAAATATGCCT 608 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 535 CATTCTAGAAGAGTTGATCCTCCACCAAACTCGCTCTCCGTGCAGGCCACAAATATGCCT 594 Query 609 TTGATGCAAGGAATGATCAAGTCTGAGACTGCATAT-CAAAACTGTGCTCCATACATGTA 667 |||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| Sbjct 595 TTGATGCAAGGAATGATCAAGTCTGAGACTGCATATTCAAA-CTGTGCTCCGTACATGTA 653 Query 668 TGGTGGTGAAGCACAGTCCACAGTTGGAGATG-TCACCATCGCATCTTTCAGCAATGATT 726 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct 654 TGGTGGTGAAGCACAGTCCACAGTTGGAGATGCTC-CCATTGCATCTTTCAGCAATGATT 712 Query 727 CCAGCAACCAATCCCTGAATGATCCTCTTGTCGATCCAGATGCTCCTACATTTGGCTCGT 786 |||||||||||||||| |||||||| || | | | || | | || Sbjct 713 CCAGCAACCAATCCCTCAATGATCCA-TT-T-G-----G---CT--T-C-TT-------- 749 Query 787 TAGGACAAATTCCTCAGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAGTT 846 ||||||| | |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 750 -AGGACAACTACCTCGGAACTTCAGCCTCTCTGATCTGACAGCTGATTTTTCCCAGAATT 808 Query 847 CAGATATTCTGGAGAGCTACGAGGGATCACCGTTCCTATTGGCTGATGCTGAAAATTTCC 906 |||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 809 CAGAGATTCTGGAGAGCTACGATAGATCACCATTCCTATTGGCTGATGCGGAAAATTTCT 868 Query 907 TGGACTCTAGCGAAAGGGTAGAACATCAAGGAGACCACGAAAGATTGAGGACCATATCAT 966 |||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||| | Sbjct 869 TGGACTCTAGTGAAAGGGTAGAACCTCAAGGAGACCGCGAAAGATTGGGGACCATATC-T 927 Query 967 CA-GGCTTCAGTTACGAAAACTTCC-GAAGCAATTAGGTTTATTACACATGGAACTTCGT 1024 | |||||||| ||||||||| || || ||| ||||||||| |||| ||||| |||| Sbjct 928 GAAGGCTTCAGCTACGAAAACCTCAAGA-GCATTTAGGTTTACTACATATGGAGCTTC-- 984 Query 1025 AGTCATGCTTTTACGTCTGCAACTACTTGCAGGATTTAATCCCATGATCAGTGTACATAG 1084 | | | | | | | |||||||||||||| |||| |||||||||||||||||| || Sbjct 985 A--C--G-T----C-T-T-CAACTACTTGCAGGGTTTAGTCCCATGATCAGTGTACAGAG 1032 Query 1085 ATATTCTTACCTTTCGAAAGACAATTTTGGGGTTCAGG-GTGATTACTAATATTATTATT 1143 |||||||||||||||||||||||||||| |||| || |||| |||||||||||||||| Sbjct 1033 ATATTCTTACCTTTCGAAAGACAATTTTTGGGTG--GGAGTGAATACTAATATTATTATT 1090 Query 1144 CTCAAGTGTAGAGAAATTTGGTTTTTAGTAATAAATATTTAAGAACCTGTTGATTTTAAT 1203 ||||||||||||||||||||||||||| ||||||||||||||| | | ||||||||| || Sbjct 1091 CTCAAGTGTAGAGAAATTTGGTTTTTATTAATAAATATTTAAGCAGCAGTTGATTTTGAT 1150 Query 1204 TGCATCATTGTAGGATATTCGATTTTGATTGTATAATC 1241 || ||||||||| ||| || |||||||||||||||||| Sbjct 1151 TGTATCATTGTATGATTTTGGATTTTGATTGTATAATC 1188 > Ahg478351 jgi|Araly1|478351|fgenesh2_kg.3__1052__AT3G10250.1 Length=1317 Score = 322 bits (174), Expect = 4e-87 Identities = 301/361 (83%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 84 ATGTCAAGTTTAACAGTGAGAAGGGTATCGCG-CGAAGATATACAACTGGTTCAGAATCT 142 ||||||||| | |||||||| |||| || || | ||||||||||||| ||||| || || Sbjct 123 ATGTCAAGTGGATCAGTGAGACGGGTTTCACGTC-AAGATATACAACTCGTTCAAAACCT 181 Query 143 AATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGACACTCTT-CTAG 201 || ||||||||||| || ||||||||||| |||||||||||||| || ||| || |||| Sbjct 182 TATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTAGATACT-TTACTAG 240 Query 202 AACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGA 261 | |||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||| Sbjct 241 AGCAGGCTAAAATCGAGCCTGGCTTCACAGAGCTAGTTTGGCAGAAGCTTGAAGAAGAGA 300 Query 262 ACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAAT 321 | || || ||||||||||| || ||||| ||||| ||||| || |||||||||||||| | Sbjct 301 ATCGGGAGTTTTTCAAGGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAGT 360 Query 322 AT-AACGAACT-GCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACTGCAGG 379 | ||| || | ||||||||||||| | |||||||||| |||||||||||||||| || Sbjct 361 -TCAAC-AAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTG--GG 416 Query 380 G--GCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCAC-CAATGAATCAGCAACAATT 436 | ||||| || | ||| | |||||||||||| ||| | ||||||||||| ||||||| Sbjct 417 GTTGCTTCCGTCCAAAATACTAATGGTTCTCATATTC-ATTCAATGAATCAGAAACAATT 475 Query 437 A 437 | Sbjct 476 A 476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47196171246 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5