BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04120.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939809 jgi|Araly1|939809|scaffold_600353.1 1127 0.0
> Ahg939809 jgi|Araly1|939809|scaffold_600353.1
Length=759
Score = 1127 bits (610), Expect = 0.0
Identities = 713/761 (94%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 70 CAATACCCCTTCCGATAACATGGGTCATGAATGGATCGATGCAGAGAGGGAGTTCAAATG 129
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2 CAATACCCCTTCCAATAACATGGGTCATGAATGGATCAATGCAGAGAAGGAGTTCAAATG 61
Query 130 GAGCGAGGATGTCAAAGTTGAAAGTGAAGTGACTGAGATCGTTCTTGTTCGCCATGGAGA 189
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 62 GGGCGAGGATGTCAAAGTTGAGAGTGAAGTGACTGAGATTGTTCTTGTTCGCCATGGAGA 121
Query 190 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGACCTTAACGAGGT 249
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 122 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGATCTTAACGAGGT 181
Query 250 TGGACTAAAGCAGGCTGTTGCAATCGCTGAGAGGTTGGGAAAAGAGGAAAGACCTGTAGC 309
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 182 TGGACAAAAGCAGGCTGTTGCAATCGCTGAGAGATTGGGAAAAGAGGAAAGACCCGTAGC 241
Query 310 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCTCTT-ATGATCGCCAAAACTT 368
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 242 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCT-TTGATGATCGCCAAAACTT 300
Query 369 GTTTCTGTCCCGAGGTGATCGAAGTACCTGACTTAAAGGAGAGGCACGTGGGTAGTCTCC 428
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GTTTTTGTCCCGAGGTGATTGAAGTACCTGACTTGAAGGAGAGGCACGTGGGTAGTCTCC 360
Query 429 AAGGCCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACTCTGCCTTTTTCT 488
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AAGGGCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACGCTGCCTTTTTCT 420
Query 489 CTTCCCAAAACGACCTCGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTT-GCTGAT 547
|||||||| | ||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 421 CTTCCCAAGATGACCTTGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTTTG-TGAT 479
Query 548 AGATCCATGGATGCTCTTGAGCAAATTGCTAAGAAGCACAAAGGAGAGAGAGTGATAGTG 607
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 AGATCCATGAATGCTCTTGAGCAAATTGCAAAGAAGCACAAAGGAGAGAGAGTGATAGTG 539
Query 608 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTAAGGATCACACAAGCTTCCTCTGCC 667
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTGAGGATCACACAAGCTTCCTCTGCA 599
Query 668 GGAAAACT-CTTGAATGCTTCAGTGAATGTGGTTCATCTCCGTGATCAA-AAATGGATCA 725
|||||||| || ||||||||||||||||| ||||| | |||||| | | ||||||||||
Sbjct 600 GGAAAACTACTA-AATGCTTCAGTGAATGTTGTTCACCGCCGTGA-CGAGAAATGGATCA 657
Query 726 TCGATTCGTGGAGCGATGTATCACATCTATCATCCGTTGGATTTCTTCAACGTGGCTTTG 785
| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 658 TTGATTCGTGGAGCGATGTTTCACATCTCTCTTCCGTTGGATTTCTCCAACGTGGCTTTG 717
Query 786 ATGGAGACGCCAA-GCCCTAGAGA--A-CCTCCTCATTCAT 822
||||||| ||||| ||| ||| || | |||| ||||||||
Sbjct 718 ATGGAGATGCCAAAGCC-TAGGGAGGAGCCTCATCATTCAT 757
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5