BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04120.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg939809 jgi|Araly1|939809|scaffold_600353.1 1127 0.0 > Ahg939809 jgi|Araly1|939809|scaffold_600353.1 Length=759 Score = 1127 bits (610), Expect = 0.0 Identities = 713/761 (94%), Gaps = 13/761 (2%) Strand=Plus/Plus Query 70 CAATACCCCTTCCGATAACATGGGTCATGAATGGATCGATGCAGAGAGGGAGTTCAAATG 129 ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 2 CAATACCCCTTCCAATAACATGGGTCATGAATGGATCAATGCAGAGAAGGAGTTCAAATG 61 Query 130 GAGCGAGGATGTCAAAGTTGAAAGTGAAGTGACTGAGATCGTTCTTGTTCGCCATGGAGA 189 | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 62 GGGCGAGGATGTCAAAGTTGAGAGTGAAGTGACTGAGATTGTTCTTGTTCGCCATGGAGA 121 Query 190 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGACCTTAACGAGGT 249 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 122 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGATCTTAACGAGGT 181 Query 250 TGGACTAAAGCAGGCTGTTGCAATCGCTGAGAGGTTGGGAAAAGAGGAAAGACCTGTAGC 309 ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 182 TGGACAAAAGCAGGCTGTTGCAATCGCTGAGAGATTGGGAAAAGAGGAAAGACCCGTAGC 241 Query 310 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCTCTT-ATGATCGCCAAAACTT 368 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 242 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCT-TTGATGATCGCCAAAACTT 300 Query 369 GTTTCTGTCCCGAGGTGATCGAAGTACCTGACTTAAAGGAGAGGCACGTGGGTAGTCTCC 428 |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 301 GTTTTTGTCCCGAGGTGATTGAAGTACCTGACTTGAAGGAGAGGCACGTGGGTAGTCTCC 360 Query 429 AAGGCCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACTCTGCCTTTTTCT 488 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 AAGGGCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACGCTGCCTTTTTCT 420 Query 489 CTTCCCAAAACGACCTCGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTT-GCTGAT 547 |||||||| | ||||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 421 CTTCCCAAGATGACCTTGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTTTG-TGAT 479 Query 548 AGATCCATGGATGCTCTTGAGCAAATTGCTAAGAAGCACAAAGGAGAGAGAGTGATAGTG 607 ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 480 AGATCCATGAATGCTCTTGAGCAAATTGCAAAGAAGCACAAAGGAGAGAGAGTGATAGTG 539 Query 608 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTAAGGATCACACAAGCTTCCTCTGCC 667 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 540 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTGAGGATCACACAAGCTTCCTCTGCA 599 Query 668 GGAAAACT-CTTGAATGCTTCAGTGAATGTGGTTCATCTCCGTGATCAA-AAATGGATCA 725 |||||||| || ||||||||||||||||| ||||| | |||||| | | |||||||||| Sbjct 600 GGAAAACTACTA-AATGCTTCAGTGAATGTTGTTCACCGCCGTGA-CGAGAAATGGATCA 657 Query 726 TCGATTCGTGGAGCGATGTATCACATCTATCATCCGTTGGATTTCTTCAACGTGGCTTTG 785 | ||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||| Sbjct 658 TTGATTCGTGGAGCGATGTTTCACATCTCTCTTCCGTTGGATTTCTCCAACGTGGCTTTG 717 Query 786 ATGGAGACGCCAA-GCCCTAGAGA--A-CCTCCTCATTCAT 822 ||||||| ||||| ||| ||| || | |||| |||||||| Sbjct 718 ATGGAGATGCCAAAGCC-TAGGGAGGAGCCTCATCATTCAT 757 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5