BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04150.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892333 jgi|Araly1|892333|Al_scaffold_0006_329 1053 0.0
> Ahg892333 jgi|Araly1|892333|Al_scaffold_0006_329
Length=729
Score = 1053 bits (570), Expect = 0.0
Identities = 679/729 (93%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 ATGGAGTATCCATGGCTGCAGTCTCAAGTTCATTCCTTTTCACCTACTCTCC-AT-T-TT 57
|||||||||||||||||||||||||||| | |||||||||| |||||||||| || | ||
Sbjct 1 ATGGAGTATCCATGGCTGCAGTCTCAAGCTGATTCCTTTTCTCCTACTCTCCAATATCTT 60
Query 58 CCTTCCTTCCTTCATCCTTTAGATGATTCCAAGAGCCATAACATCAATC----T--TCAT 111
||||| |||||| ||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 61 CCTTCTTTCCTTTATCCTTTAGATGATTCCAAGAGCTATAACATCAATCTTTATCCTCAT 120
Query 112 CATATGA-GTCTTA---GTCACAGCAATAATACTAACAGTAACAATAACAATTATCAAGA 167
||||| | |||||| | ||||||||| |||||||||||||| ||||||| |||||||
Sbjct 121 CATAT-ACGTCTTACTCGACACAGCAATGATACTAACAGTAACTGTAACAATGATCAAGA 179
Query 168 AGAAGATCGAGGAGCGGTGGTTTTGGAGAAGAAACTGAATCACAACGCAAGCGAACGAGA 227
||||| ||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAGTTCGAGGAAC--T-GTTTTGGAGAAGAAACTGAATCACAACGCAAGCGAACGAGA 236
Query 228 CCGCCGTAGAAAACTTAACGCCTTGTACTCTTCACTTCGTGCTCTCTTGCCTCTTTCTGA 287
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCGCCGTAGAAAGCTTAACGCCTTGTACTCTTCACTTCGTGCTCTCTTGCCTCTTTCTGA 296
Query 288 TCAAAAGAGGAAGCTGAGCATTCCTATGACGGTAGCGAGAGTAGTGAAATACATACCAGA 347
||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 297 CCAAAAGAGGAAGCTGAGTATTCCGATGACGGTAGCGAGAGTGGTGAAGTACATACCAGA 356
Query 348 GCAGAAGCAAGAACTTCAACGTTTGTCTCGGAGAAAAGAAGAGCTCTTGAAGAGGATCTC 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 GCAGAAGCAAGAACTTCAACGTTTGTCTCGGAGAAAAGAAGAGCTCTTGAAGAGAATCTC 416
Query 408 GAGAAAAACTCACCAAGAGCAGCTGAGAAACAAAGCAATGATGGACTCAATAGATTCTTC 467
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 GAGAAAAACTCACCAAGAACAGCTGAGAAACAAAGCAATGATGGACTCAATAGAATCTTC 476
Query 468 TTCCTCTCAACGGATCGCAGCAAATTGGCTCACTGACACAGAGATTGCTGTCCAGATTGC 527
|||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 477 TTCCTCCCAACGGATTGCAGCAAACTGGCTCACTGACACTGAGATTGCTGTCCAGATTGC 536
Query 528 TACGTCGAAATGGACATCTGTTTCAGACATGTTGCTTAGGTTAGAAGAAAACGGGCTTAA 587
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 537 TACATCGAAATGGACATCTGTCTCCGACATGTTGCTTAGGTTAGAAGAAAACGGGCTTAA 596
Query 588 TGTCATAAGCGTCTCTTCTTCCGTTTCTTCCACCGCAAGGATCTTCTACACTCTACATCT 647
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 597 TGTCATAAGCGTCTCTTCTTCAGTTTCTTCAACCGCAAGGATCTTCTACACTCTACATCT 656
Query 648 TCAGATGAGAGGAGATTGCAAAGTGAGACTGGAGGAACTCATCAATGGTATGCTCTTGGG 707
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 TCAGATGAGAGGAGATTGCAAAGTGAGACTGGAGGAACTCATCAATGGTACGCTCTTGGG 716
Query 708 ATTACGCCA 716
|||| ||||
Sbjct 717 ATTAGGCCA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5