BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04160.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487196 jgi|Araly1|487196|fgenesh2_kg.6__330__AT5G04160.1 2008 0.0
Ahg928717 jgi|Araly1|928717|scaffold_301174.1 1026 0.0
> Ahg487196 jgi|Araly1|487196|fgenesh2_kg.6__330__AT5G04160.1
Length=1308
Score = 2008 bits (1087), Expect = 0.0
Identities = 1247/1322 (94%), Gaps = 20/1322 (2%)
Strand=Plus/Plus
Query 1 CTTGCCGTTCCATGCTCCAAGTAAGGACCTGAtttctctcgttttctctttctctctctc 60
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 CTTGCCGTTCCATGCTCCAAGTAAGGACCTGATTTCTCTCG--TTCTC--TCTCTCTCTC 56
Query 61 tc-tctctcattctctcAACGAAATCTCGATCTCGTCGAGGAAGAAGAAGAACCCAGATC 119
|| | |||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCAT-TCTC--T-TC-CAACGAAATCTCGATCTCGTCGAGGAAGAAGAAGAACCCAGATC 111
Query 120 AGAAAACATAACAACAATGTCGTCGTCTGCGAAGAAACAAACCCTGTTCATATCGACATT 179
|| ||||| |||||||||||||||||| | ||||||||||| | |||||||||||| |
Sbjct 112 AG-AAACA-CACAACAATGTCGTCGTCTTCAAAGAAACAAACTTTATTCATATCGACACT 169
Query 180 AATCATCTCATGGTACTCTTCAAACATCGGTGTTCTTCTCCTCAACAAGTTCCTTCTCTC 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 170 AATCATCTCATGGTACTCTTCAAACATCGGTGTTCTTCTCCTCAACAAGTTCCTCCTCTC 229
Query 240 GAATTACGGATTCAAATTCCCGATTTTTCTCACAATGTGTCACATGTCCGCTTGCGCTAT 299
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 230 CAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTGTCACATGTCCGCTTGTGCAAT 289
Query 300 CCTTAGCTACATCTCCATTGTTTTCCTCAAGCTTGTTCCTCTCCAACATCTCAAATCTCG 359
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 290 CCTTAGCTACATCTCCATCGTCTTCCTCAAGCTTGTTCCTCTCCAACATCTCAAATCTCG 349
Query 360 TTCTCAATTCCTTAAGGTTGCTACTCTCAGCATCGTCTTTTGTGCTTCCGTCGTCGGTGG 419
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTCCCAATTTCTCAAGGTTGCTACTCTCAGCATCGTCTTTTGTGCTTCCGTCGTCGGTGG 409
Query 420 TAACATCTCCCTTCGTTACCTTCCTGTCTCTTTCAATCAAGCCGTCGGTGCTACGACGCC 479
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 410 TAACATCTCGCTTCGTTACCTTCCCGTCTCTTTCAATCAAGCTGTCGGTGCTACGACGCC 469
Query 480 GTTTTTCACGGCTCTGTTTGCTTATCTTATGACCTTTAAGAGAGAAGCTTGGGTTACTTA 539
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 470 GTTTTTCACCGCTCTGTTCGCTTATCTTATGACCCTTAAGAGAGAAGCTTGGGTTACTTA 529
Query 540 TGGTGCTCTCGTCCCTGTCGTCGCCGGTGTCGTCATCGCCAGTGGGGGTGAGCCAGGATT 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 530 TGGTGCTCTCGTCCCTGTCGTTGCCGGTGTCGTCATCGCCAGTGGGGGTGAGCCAGGATT 589
Query 600 TCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACTGCGGCAAGAGCCTTTAAATCTGT 659
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 590 TCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACGGCTGCTAGAGCCTTTAAATCTGT 649
Query 660 TCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAATTGAACTCAATGAATTTGATGTT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAATTGAACTCAATGAATTTGATGTT 709
Query 720 GTATATGTCTCCCATAGCTGTCATTGCTCTTCTTCCCGTTACGCTATTTATGGAACCAGA 779
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 GTATATGTCTCCGATAGCTGTCATTGCTCTTCTTCCCGTCACGCTATTTATGGAACCAGA 769
Query 780 CGTGATCAGTGTGACCTTGACGCTTGCAAAACAACATCAGTACATGTGGATACTTCTTCT 839
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 770 CGTGATCAGTGTGACCTTGACGCTAGCAAAACAACATCAGTATATGTGGATACTTCTTCT 829
Query 840 GGTTAACTCTGTCATGGCTTATTCAGCCAATCTGTTGAATTTTCTGGTTACCAAACACAC 899
||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 830 GGTTAACTCGGTAATGGCTTATTCAGCCAATTTGTTGAATTTTCTGGTTACCAAACACAC 889
Query 900 AAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTAAAGGAGCAGTTGCAGTGGTGATTTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTAAAGGAGCAGTTGCAGTGGTGATTTC 949
Query 960 TATCTTGATCTTTCAAAACCCGGTTACGGTTATGGGAATTGGCGGGTACTCCATAACCGT 1019
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GATCTTGATCTTTCGAAACCCGGTTACGGTTATGGGAATTGGCGGGTACTCCATAACCGT 1009
Query 1020 CCTTGGGGTGGTTGCTTATGGAGAGACAAAACGCAGATTTAGATGAACTCT--CAGACAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1010 CCTTGGGGTGGTTGCTTATGGAGAGACAAAACGCAGATTTAGATGAACTTTGTCAGACAT 1069
Query 1078 TAGCAAGTGAGA-CA-ACATAGCTTCTCTATGTTTGTTTCTTCATCTGTTCAAGACTCAT 1135
||||||| || | || | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 TAGCAAGGGACAACATATATAGCTTTTCTATGTTTGTTTCTTCATCTGTTCAAGACTCAT 1129
Query 1136 CCTTAGGACCTGAAATTTTTGGGCATTTAGGAGATGAGAATTTATCAATAGTGATTTTTT 1195
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 CCTTAGGACCTGAAATATTTGGGGATTTAGGAGATGAGAATTTATCAATAGTGATTTTTT 1189
Query 1196 -GTAACTATTTTATACGCACTTTATCATGTAATATGTATTTGGACTATGTTAGATTTGAT 1254
|||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| |||
Sbjct 1190 TGTAACTATTTTATACGTATTTTATAATGTAATATGTATC-GGACTATGTTAGATTCGAT 1248
Query 1255 GGTGAGATAATCATTTTTGTGTGTTTCCTGGTTGAAATACCATTTTGGTTATTGAACTTA 1314
|||||||||||||||||||||| || | ||| |||||||||||||| |||| ||||||
Sbjct 1249 GGTGAGATAATCATTTTTGTGT-TT-CAAAGTTAAAATACCATTTTGGCTATTTAACTTA 1306
Query 1315 TT 1316
||
Sbjct 1307 TT 1308
> Ahg928717 jgi|Araly1|928717|scaffold_301174.1
Length=968
Score = 1026 bits (555), Expect = 0.0
Identities = 799/917 (87%), Gaps = 15/917 (2%)
Strand=Plus/Plus
Query 161 CCCTGTTCATATCGA-CATTAATCAT-CTCATGGTACTCTTCAAACATCGGTGTTCTTCT 218
|||| |||||||| | | |||||||| ||| |||||| | || |||||||||||||||||
Sbjct 43 CCCTCTTCATATC-ATCCTTAATCATCCTC-TGGTACACCTCCAACATCGGTGTTCTTCT 100
Query 219 CCTCAACAAGTTCCTTCTCTCGAATTACGGATTCAAATTCCCGATTTTTCTCACAATGTG 278
||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 101 CCTCAACAAGTTCCTCCTCTCCAATTACGGATTCAAATTCCCCATTTTCCTCACAATGTG 160
Query 279 TCACATGTCCGCTTGCGCTATCCTTAGCTACATCTCCATTGTTTTCCTCAAGCTTGTTCC 338
|||||| ||||||||||||||||| |||||| ||||||| || |||||||| || || ||
Sbjct 161 TCACATTTCCGCTTGCGCTATCCTCAGCTACGTCTCCATCGTCTTCCTCAAACTCGTCCC 220
Query 339 TCTCCAACATCTCAAATCTCGTTCTCAATTCCTTAAGGTTGCTACTCTCAGCATCGTCTT 398
||||||| | ||||||||||||||||| || || |||||||| ||||||||||| |||||
Sbjct 221 TCTCCAATACCTCAAATCTCGTTCTCAGTTTCTCAAGGTTGCGACTCTCAGCATTGTCTT 280
Query 399 TTGTGCTTCCGTCGTCGGTGGTAACATCTCCCTTCGTTACCTTCCTGTCTC-TTTCAATC 457
|||||| ||||| |||||||||||||||||||||||||| || |||||||| ||| ||||
Sbjct 281 TTGTGCCTCCGTTGTCGGTGGTAACATCTCCCTTCGTTATCTCCCTGTCTCGTTT-AATC 339
Query 458 AAGCCGTCGGTGCTACGACGCCGTTTTTCACGGCTCTGTTTGCTTATCTTATGACCTTTA 517
||||||| ||||||||||||||||||||||| || || || |||||| | ||||||||||
Sbjct 340 AAGCCGTTGGTGCTACGACGCCGTTTTTCACTGCACTCTTCGCTTATATCATGACCTTTA 399
Query 518 AGAG-AGAAGCTTGGGTTACTTATGGTGCTCTCGTCCCTGTCGTCGCCGGTGTCGTCATC 576
| || |||||||||||| |||||||||||||||||||| || || |||||||||| |||
Sbjct 400 A-AGGAGAAGCTTGGGTCACTTATGGTGCTCTCGTCCCCGTTGTTACCGGTGTCGTTATC 458
Query 577 GCCAGTGGGGGTGAGCCAGGATTTCACTGGTTTGGGTTCATAATGTGCATTAGTGCTACT 636
|||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 459 GCCAGTGGGGGTGAACCAGGTTTTCACTGGTTTGGATTCATTATGTGTATTAGTGCTACT 518
Query 637 GCGGCAAGAGCCTTTAAATCTGTTCTTCAAGGCATCTTACTTTCTTCAGAGGGGGAAAAA 696
|| |||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 519 GCAGCAAGAGCTTTTAAATCTGTTCTTCAAGACATCTTACTTTCTTCCGAGGGAGAAAAG 578
Query 697 TTGAACTCAATGAATTTGATGTTGTATATGTCTCCCATAGCTGTCATTGCTCTTCTTCCC 756
|||| || |||||||||||| |||| |||||||| ||||| ||||| |||||||| |||
Sbjct 579 CTGAATTCGATGAATTTGATGCTGTACATGTCTCCAATAGCCGTCATGGCTCTTCTGCCC 638
Query 757 GTTACGCTATTTATGGAACCAGACGTGATCAGTGTGAC-CTTGACGCTTGCAAAACAACA 815
|| || | |||||||| || || ||||| |||||||| || || || | || ||||||
Sbjct 639 GTCACAATTTTTATGGAGCCGGATGTGATGAGTGTGACACTA-ACACTCGGAAGACAACA 697
Query 816 TCAGTACATGTGGATACTTCTTCTGGTTAACTCTGTCATGGCTTATTCAGCCAATCT-GT 874
| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 698 TAAGTACATGTGGTTACTTCTGCTGGTTAACTCTGTAATGGCTTATTCAGCCAA-CTTGT 756
Query 875 TGAATTTTCTGGTTACCAAACACACAAGCGCCCTCACCCTCCAGGTTCTTGGAAATGCTA 934
| || ||||| || ||||| ||||||||||| || ||||||||||| |||||||||||||
Sbjct 757 TAAACTTTCTTGTAACCAAGCACACAAGCGCGCTTACCCTCCAGGTCCTTGGAAATGCTA 816
Query 935 AAGGAGCAGTTGCAGTGGTGATTTCTATCTTGATCTTTCA-AAACCCGGTTACGGTTATG 993
||||||| |||||||| ||||| || ||| || | |||| ||||||||| ||||| |||
Sbjct 817 AAGGAGCGGTTGCAGTTGTGATCTCGATCCTGCT-TTTCCGAAACCCGGTAACGGTGATG 875
Query 994 GGAATTGGCGGGTACTCCATAACCGTCCTTGGGGTGGTTGCTTATGGAGAGACAAAACGC 1053
||||||||||||||| |||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 876 GGAATTGGCGGGTACAGTATAACCGTTCTCGGGGTTGTTGCTTATGGAGAGACTAAACGC 935
Query 1054 AGATTTAGATGAA-CTC 1069
|| |||||||||| |||
Sbjct 936 AGGTTTAGATGAAGCTC 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5