BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04170.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939814 jgi|Araly1|939814|scaffold_600358.1 1583 0.0
Ahg928719 jgi|Araly1|928719|scaffold_301176.1 582 2e-165
Ahg487198 jgi|Araly1|487198|fgenesh2_kg.6__332__AT5G04180.1 180 3e-44
> Ahg939814 jgi|Araly1|939814|scaffold_600358.1
Length=1129
Score = 1583 bits (857), Expect = 0.0
Identities = 1051/1138 (92%), Gaps = 40/1138 (4%)
Strand=Plus/Plus
Query 129 ATTGTCAAGTCATTTCATCGATGTCAGGATATCCTCCGACTAGCCAAGGTTACGGTTACG 188
|||||||| | |||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1 ATTGTCAAAACGTTTCATCGATGTCAGGTTACCCTCCGACGAGCCAAGGTTACGGTTACG 60
Query 189 GTTACGGCGGCGGTAATCAACCTCCACCACCTCAACCACCTTACTCTTCCGGCGGAAACA 248
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 GTTACGGCGGCGGAAATCAACCTCCACCACCTCAACCACCTTACTCCTCCGGCGGTAACA 120
Query 249 ATCCTCCCTACGGATCATCAACAACCTCTTCTCCTTACGCTGTACCCTACGGCGCATCTA 308
||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 121 ATCCTCCTTACGGATCAT---CAACCTCTTCTCCTTACGCTGTACCCTACGGCGGACCTA 177
Query 309 AACCACAATCATCATCCTCT-TC-TG-CGCCG-AC-G----T---A--C-GGATCTTCAT 353
|||||| | ||||||||| | | ||||| || | | | | ||||||||
Sbjct 178 AACCAC---CGTCATCCTCTCCCACGCCGCCGTACGGATCTTCAAAGCCTCAATCTTCAT 234
Query 354 CATACGGAGCACCGCCTCCTTCAGCTCCGTACGCGCCTTCTCCAGGAGACTACAACAAGC 413
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 235 CATACGGAGCACCGCCTCCTTCAGCTCCATACGCGCCTTCTCCAGGCGACTACAACAAGC 294
Query 414 CGCCAAAGGAGAAACCATAC---GG--A-GGA------GGC---TACGGAGCTCCACCAC 458
|||||||||||||||| ||| || | ||| ||| |||||||||||||| |
Sbjct 295 CGCCAAAGGAGAAACCTTACGGAGGCTACGGAGCTTCCGGCGATTACGGAGCTCCACCGC 354
Query 459 CGTCTGGATCTTCAGATTACGGAAGTTACGGTGCTGGACCTCGTCCGTCGCAGCCGTCTG 518
|| ||||| ||||||||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct 355 CGCCTGGACCTTCAGATTACGGGAGTTACGGTGCTGGACCTCGTCCGACGCCGTCGTCTG 414
Query 519 GGCACGGTGGAGGATACGGAGCTACTCCACCG-CATGGGGTTTCTGACTATGGAAGTTAC 577
|| || |||||||||||||||||||||| ||| | |||| ||||||| ||||| ||||||
Sbjct 415 GGTACAGTGGAGGATACGGAGCTACTCCGCCGTC-TGGGATTTCTGAATATGGGAGTTAC 473
Query 578 GGTGGTGCTCCACCTCGTCCAGCGTCTTCTGGTCACGGTGGCGGATACGGAGGTTATCCT 637
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 474 GGTGGTGCTCCGCCTCGTCCAGCGTCTTCTGGTCAGGGCGGCGGATACGGAGGTTATCCT 533
Query 638 CCGCAAGCCTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGGTTTTGCTCCGGGG 697
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CCGCAAGCTTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGGTTTTGCTCCGGGA 593
Query 698 ACAGATCCGAATATAGTGGCTTGCTTTCAGGCTGCAGATCAAGATGGTAGTGGCTTTATT 757
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ACGGATCCGAATATAGTGGCTTGCTTTCAGGCTGCAGATCAAGATGGTAGTGGCTTTATT 653
Query 758 GATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAACAGAGATTCAGTATGAGAACT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAACAGAGATTCAGTATGAGAACT 713
Query 818 GTTCATCTTCTTATGTATCTATTCACCAATAGCAATGCTATGAAAATCGGACCTAAGGAG 877
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 714 GTTCATCTTCTTATGTATCTGTTCACCAATAGCAATGCCATGAAAATCGGACCTAAGGAG 773
Query 878 TTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAG 833
Query 938 GACAGGAGTGGAAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTT 997
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GACAGGAGTGGCAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTT 893
Query 998 TCGGTTTCTCCTGTGGTTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAG 1057
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCGGTTTCTCCTGTGATTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAG 953
Query 1058 AACAGGGCTATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGGGGCTGACA 1117
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 954 AACAGGGCCATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGGGCCTGACA 1013
Query 1118 GAGAAGTTCAAGGAGAAGGACACAGCATACTCAGGCTCAGCTACTTTCAACTACGAAAGC 1177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1014 GAGAAGTTCAAGGAGAAGGACACAGCGTACTCAGGCTCAGCTACTTTCAACTACGAAAGC 1073
Query 1178 TTCATGCTCACCGTCCTCCCCTTCCTCATCGCATAAGttttttttACGGTAACCCGTT 1235
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1074 TTCATGCTCACCGTCCTCCCCTTCCTCATCGCATAAGTTTTTA--ACGGTAACCCGTT 1129
> Ahg928719 jgi|Araly1|928719|scaffold_301176.1
Length=959
Score = 582 bits (315), Expect = 2e-165
Identities = 495/582 (85%), Gaps = 12/582 (2%)
Strand=Plus/Plus
Query 634 TCCTCCGCAAGCCTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGG-TTTTGCTC 692
|||||||||||| |||||||||||||| ||||| |||||| ||||||| || ||| |||
Sbjct 360 TCCTCCGCAAGCTTCTTATGGAAGTCCGTTTGCGTCTCTGGTTCCGTC-GGCGTTTCCTC 418
Query 693 CGGGGACAGATCCGAATATAGTGGCTTGCTTT-CAGGCTGCAGATCAAGATGGTAGTGGC 751
| || |||||||||| || |||||||| ||| || ||||| |||| || ||||||
Sbjct 419 CCGGAACAGATCCGAGCATCGTGGCTTG-TTTCCAAGCTGCGGATCGGGACAATAGTGGA 477
Query 752 TTTATTGATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAA-CAGAGATTCAGTAT 810
|| || ||||||||||||||||| |||||||||||||| ||| || ||||| ||||| ||
Sbjct 478 TTCATCGATGATAAGGAGCTTCAGGGAGCTCTCTCTTCGTAT-AATCAGAGCTTCAGCAT 536
Query 811 GAGAACTGTTCATCTTCTTATGTATCTATTCACCAATAGCAATGCT-ATGAAAATCGGAC 869
|||||||||||||||||||||||||| |||||||| ||||||| | | ||| || ||||
Sbjct 537 AAGAACTGTTCATCTTCTTATGTATCTCTTCACCAACAGCAATG-TCAGGAAGATTGGAC 595
Query 870 CTAAGGAGTTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGT 929
| || ||||||||| | ||||||| |||||||||| |||||||| || ||||| ||||
Sbjct 596 CAAAAGAGTTTACTTCTCTTTTCTTTAGTCTTCAGAGTTGGAGGTCTATCTTTGAAAGGT 655
Query 930 CTGATAAGGACAGGAGTGGAAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCC 989
|||||||||||| ||||| ||||||||| || |||||||||||||| || ||||||
Sbjct 656 TTGATAAGGACAGAAGTGGTAGAATAGATACAAACGAGCTGAGAGATGCACTCATGAGCC 715
Query 990 TTGGGTTTTCGGTTTCTCCTGTGGTTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCG 1049
|||||||||| || ||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 716 TTGGGTTTTCAGTGTCTCCTGTGATTTTGGATCTGCTCGTTTCAAAGTTTGACAAAAGCG 775
Query 1050 GAGGCAAGAACAGGGCTATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGG 1109
| |||| |||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||
Sbjct 776 GTGGCAGGAACAGGGCTATCGAATATGACAATTTCATCGAGTGTTGTTTGACTGTAAAGG 835
Query 1110 GGCTGACAGAGAAGTTCAAGGAGAAGGACACAGCAT-ACTCAGGCTCAGCTACTTTCAAC 1168
||||||| |||||||||||||||||||| || || | | ||||||||||||||||||||
Sbjct 836 GGCTGACCGAGAAGTTCAAGGAGAAGGATACGGCGTTA-TCAGGCTCAGCTACTTTCAAT 894
Query 1169 TACGA-AAGCTTCATGCTCACCGTCCTCCCCTTCCTCATCGC 1209
||||| || |||||||||||| || | || |||||| ||||
Sbjct 895 TACGAGAA-CTTCATGCTCACTGTTTTACCATTCCTCGTCGC 935
> Ahg487198 jgi|Araly1|487198|fgenesh2_kg.6__332__AT5G04180.1
Length=1084
Score = 180 bits (97), Expect = 3e-44
Identities = 110/115 (96%), Gaps = 5/115 (4%)
Strand=Plus/Minus
Query 1353 AGATCTTGTGTTATAAAATAATCAAACAACTCATTATGGTTGGATATTATTACATCTTGT 1412
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1084 AGATCTTGTGTTATAAAATAATCAAACAACTCATTATGGTTGG--A-TATTACATCTT-T 1029
Query 1413 TTATTGGAATACATGTATAAAAGAAAAACTTTATGCATATAATATTGCGTAGTTT 1467
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1028 TTATTGGAATACATGTATAAAAGAAAA-CTTTATGCATATAATATTGCGTAGTTT 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5