BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04180.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487198 jgi|Araly1|487198|fgenesh2_kg.6__332__AT5G04180.1 1524 0.0
> Ahg487198 jgi|Araly1|487198|fgenesh2_kg.6__332__AT5G04180.1
Length=1084
Score = 1524 bits (825), Expect = 0.0
Identities = 1033/1124 (92%), Gaps = 51/1124 (5%)
Strand=Plus/Plus
Query 17 agaagaagaagaaaataa-gaaaaaacaaaagatgaaaaCCATTATCCTTTTTGTAACAT 75
|||||||||| |||| || ||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGAAGAAGAA-AAAAAAAGGAAGAAACAAAAGATGAACACCATTATCCTTTTTGTAACAT 59
Query 76 TTCTTGCTCTTTCTTCTTCATCTCTAGCCGATGAGACAGAGACTGAATTTCATTACAAAC 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCTTGCTCTTTCTTCTTCATCTCTAGCCGATGAGACAGAGACTGAATTTCATTACAAAC 119
Query 136 CCGGTGAGATAGCCGATCCCTCGAAATGGAGCAGTATCAAGGCTGAATGGAAAATTTGCG 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGGTGAGATAGCCGATCCCTCGAAATGGAGCAGTATCAAGGCTGAATGGAAAATTTGCG 179
Query 196 GGACAGGGAAGAGGCAATCGCCAATCAATCTTACTCCAAAAATAGCTCGCATTGTTCACA 255
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 GGACAGGGAAGAGGCAATCGCCAATCAATCTTACTCCAGAAATAGCTCGCATTGTTCACA 239
Query 256 ATTCTACAGAGATTCTTCAGACATATTACAAACCTGTAGAGGCTATTCTTAAGAACCGTG 315
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 ATTCTACAGAGATTCTTCAGACATATTACAAACCAGTAGAGGCTATTCTTAAGAACCGTG 299
Query 316 GATTCGACATGAAGGTTAAGTGGGAAGACGATGCAGGGAAGATCGTGATCAATGATACCG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATTCGACATGAAGGTTAAGTGGGAAGACGATGCAGGGAAGATCGTGATCAATGATACCG 359
Query 376 ACTATAAATTGGTTCAAAGCCACTGGCACGCACCTTCAGAGCATTTTCTCGATGGACAGA 435
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 ACTATAAATTGGTTCAAAGCCACTGGCACGCACCTTCAGAGCATTTTCTCAATGGACAGA 419
Query 436 GGTTGGCAATGGAACTTCACATGGTACACAAAAGTGTAGAAGGGCACTTGGCAGTGATTG 495
| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 420 GATTGGCCATGGAACTTCACATGGTACACAAAAGTGAAGAAGGGCACTTGGCAGTTATCG 479
Query 496 GAGTTCTCTTCAGAGAAGGAGAACCAAATGCTTTCATTTCGCGGATCATGGACAAGATCC 555
|||||||||||| |||||| | |||||||||||||||||| ||||| ||||||||||||
Sbjct 480 GAGTTCTCTTCAAAGAAGGTGCACCAAATGCTTTCATTTCACGGATAATGGACAAGATCA 539
Query 556 ATAAGATCGCAGACGTACAAGATGGAGAGGTCAGCATCGGAAAGATAGATCCAAGAGAAT 615
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 540 ACAAGATCGCAGACGTACAAGATGGAGAGATCAGCATCGGAAAGATAGATCCAAGAGAGT 599
Query 616 TTGGATGGGATCTTAC-AAAGTTTTATGAATACAGAGGTTCTCTCACGACTCCTCCTTGC 674
|||||||||||||||| ||| |||||||||||| | || || ||||| ||||||||||||
Sbjct 600 TTGGATGGGATCTTACTAAA-TTTTATGAATACCGTGGATCGCTCACAACTCCTCCTTGC 658
Query 675 ACGGAAGATGTCATGTGGACCATCATCAACAAGGTGGGGACTGTTTCACGTGAGCAAATT 734
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 ACGGAAGATGTCATGTGGACCATCATCAACAAGGTGGGGACTGTTTCGCGTGAGCAAATT 718
Query 735 GATGTATTGACAGATGCTCGTCGCGGTGGTTATGAGAAGAACGCGAGACCAGCTCAACCT 794
||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 719 GATGTATTGACTGATGCTCGTCGCGGTGGTTATGAGAAGAACGCAAGACCGGCTCAACCG 778
Query 795 CTGAACGGACGTCTGGTTTATTTAAACGAGCAGTCCAGTCCAAGTCCAACTCCACGGCTA 854
|||||||||||||||||||||||||| ||||||||||||||||| || | ||| |||
Sbjct 779 CTGAACGGACGTCTGGTTTATTTAAATGAGCAGTCCAGTCCAAG-CC--C---ACGACTA 832
Query 855 -AGAATACCACGAGTTGGTCCGGTCTAAGACAGTCTTATAGGACAAGGCAACTCCGAGCC 913
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 833 CA-AATTCCACGAGTTGGTCCAGTCTAAGACAGTCTTATAGGACAAGGCAACTCCGAGCC 891
Query 914 CTAATTTCCATACAAAGAAAA--------TTCGGAAAAGAATTTTGAAGATGTATGAAAA 965
||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 892 CTAATTTCCATACAAAGAAAAAAAGAAAATTCGAAAAAGAATTTTGAAGATGTATGTAAA 951
Query 966 TTGGGAGCCATAACTAtttttttttAACTATTCTTTTGATTAAAAGATAAAACTACGCAA 1025
||||| |||||||||| |||||| ||||| | | || || |
Sbjct 952 TTGGGGGCCATAACTAATTTTTTA-AACTA--C----GC--AA----TA----T------ 988
Query 1026 TATTATATGCATAAAGTTTTTCTTTTATACATGTATTCCAATAAACAAGATGTAATAATA 1085
||| || |||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 989 TAT-AT--GCATAAAGTTTT-CTTTTATACATGTATTCCAATAAA-AAGATGTAATA-T- 1041
Query 1086 TCCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1129
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 -CCAACCATAATGAGTTGTTTGATTATTTTATAACACAAGATCT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5