BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04190.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939816 jgi|Araly1|939816|scaffold_600360.1 1652 0.0
> Ahg939816 jgi|Araly1|939816|scaffold_600360.1
Length=1207
Score = 1652 bits (894), Expect = 0.0
Identities = 1048/1120 (94%), Gaps = 20/1120 (2%)
Strand=Plus/Plus
Query 203 aagaagcaaaagaTACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 262
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAACCAAAAGATACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 60
Query 263 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGATCAAACGACATCGATGTCTCCT 322
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 61 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGGTCAAACGACATCGATGTTTCCT 120
Query 323 TCTCTTCTTACCTCAAACCAGACAACAACGAACAACAACAAAAGGAGAATGAAGATACTG 382
||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 121 TCTCTTCGTACCTCAAGCCAGACAACAACGGACAACAACAAAAGGAGAATGACGATACTG 180
Query 383 AGCTAAGTATCTTCGAAGCTCGAAGTTACTTTAGCGAAAACGGAAGCAACGATAGTCGAT 442
||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 181 AGCTAAGCATCTTCGAAGCTCGAAGTTACTTTAGCGAAAATGGAAGCAACGAT-G--GAT 237
Query 443 GCCAGACGAGGAATCTAAGTGGTCCAAGATTTTCTTCGGTCGCATCTGCAAAAGTGTCTT 502
|||||| |||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct 238 GCCAGATGAGGAATCTAAGTGGTCCAAGATTCTCATCTGTTTCATCTGCAAAAGTGTCTT 297
Query 503 CTTTTACCGTGGGACAAACGGCATCCTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 562
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 298 CTTTTACCGTGGGACAAACGGCATCGTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 357
Query 563 TCTCTAACAAAAACCGCCAAGGATCGGACAGAGATGGACGTAGAAGCAGCAAGAAAGGAC 622
|||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 358 TCTCTAACAAAAGCCGCCAAGGATCGGCCCGAGATGGACGTAGAAGCAGCAAGAAAGGAC 417
Query 623 CAAGATGGTTTTTTAGACGCAGGGCTTGTCCATGTTCTAGCTCCAAGTCCGTTCAGGTCC 682
| ||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||
Sbjct 418 CCAGATGGTTTTTTAGACGCAGGACTTGTCCCTGTTCTAGCTCTAAGTCGGTTCAGGTCC 477
Query 683 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAATCGTCTCGAACC 742
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 478 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAGTCGTGTCGAACC 537
Query 743 GAATAGTTCATAGTCATCAGACGATATCTTCACCTGAGCCAATAAGATTAACGATCCCTT 802
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 538 GAATCGTTCATAGTCATCAGACGATATCTTCGCCTGAGCCAATAAGATTAACAATCCCTT 597
Query 803 CAAACACTGTGACTCGGTCCATCGATTACACTGCAAACAAAGAAGCTAGAGCTCCAGTTA 862
|||||||||||||||||||| | |||||| | ||||||| ||||||||||||||| ||||
Sbjct 598 CAAACACTGTGACTCGGTCCGTAGATTACGCAGCAAACAGAGAAGCTAGAGCTCCGGTTA 657
Query 863 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATTATCAGAAAATCCCAAGAATC 922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 658 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATCATCAGAAAATCCCAAGAATC 717
Query 923 CGGTTTTGAATCATATTAAACCGGTACGAATTGAACCGGCTCTGCTTCCGATTAAACCGG 982
|||||||| | | | | | | ||||||||| ||||||||||||||||||||
Sbjct 718 CGGTTTTGG-T--T------C-G--A--A-TTGAACCGGTTCTGCTTCCGATTAAACCGG 762
Query 983 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACAAGCGACGCAA 1042
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 763 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACGAGCGACGCTA 822
Query 1043 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAAACC-GCAGCTCGTCCATGGGCT 1101
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 823 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAA-CCTGCAGCTCGTCCATGGGCT 881
Query 1102 CCACCAGTACGGGACTCGATGGAAGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 1161
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 882 CCACCAGTACGGGTCTCGATAGACGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 941
Query 1162 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCGGCCGTTGCAGCTAACTTC 1221
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 942 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCCGCGGTTGCAGCTAACTTC 1001
Query 1222 TCAAGAATTGCCTTGTCGTCATCGTCTACAGCATTTAGTGGTTACGATAAGAAGAGAACC 1281
|||||||| ||||||||||| ||||| || || ||||||||||||||||||| |||||||
Sbjct 1002 TCAAGAATCGCCTTGTCGTCCTCGTCGACGGCGTTTAGTGGTTACGATAAGAGGAGAACC 1061
Query 1282 GGTTTGTTGAACTGTCATTGTGAGAAGGCGGTTATGGTTA 1321
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1062 GGTTTGTTGAACTGTCACTGTGAGAAGGCGGTTATGGTTA 1101
Score = 159 bits (86), Expect = 4e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1364 TTCAAAACGACGTCGCGGGAAAGGTGTTGTGCAACAATGGCAGTTCTAAACTAAGCGTGA 1423
||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1108 TTCAAAACGACTTCGCGGGAAAGGTGTTGTGCAGCAATGGCAATTCTAAACTAAGCGTGA 1167
Query 1424 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1458
|||||||||||||||||||||||||||||||||||
Sbjct 1168 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5