BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04190.1 Length=1590 Score E Sequences producing significant alignments: (Bits) Value Ahg939816 jgi|Araly1|939816|scaffold_600360.1 1652 0.0 > Ahg939816 jgi|Araly1|939816|scaffold_600360.1 Length=1207 Score = 1652 bits (894), Expect = 0.0 Identities = 1048/1120 (94%), Gaps = 20/1120 (2%) Strand=Plus/Plus Query 203 aagaagcaaaagaTACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 262 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGAACCAAAAGATACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 60 Query 263 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGATCAAACGACATCGATGTCTCCT 322 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 61 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGGTCAAACGACATCGATGTTTCCT 120 Query 323 TCTCTTCTTACCTCAAACCAGACAACAACGAACAACAACAAAAGGAGAATGAAGATACTG 382 ||||||| |||||||| ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 121 TCTCTTCGTACCTCAAGCCAGACAACAACGGACAACAACAAAAGGAGAATGACGATACTG 180 Query 383 AGCTAAGTATCTTCGAAGCTCGAAGTTACTTTAGCGAAAACGGAAGCAACGATAGTCGAT 442 ||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 181 AGCTAAGCATCTTCGAAGCTCGAAGTTACTTTAGCGAAAATGGAAGCAACGAT-G--GAT 237 Query 443 GCCAGACGAGGAATCTAAGTGGTCCAAGATTTTCTTCGGTCGCATCTGCAAAAGTGTCTT 502 |||||| |||||||||||||||||||||||| || || || |||||||||||||||||| Sbjct 238 GCCAGATGAGGAATCTAAGTGGTCCAAGATTCTCATCTGTTTCATCTGCAAAAGTGTCTT 297 Query 503 CTTTTACCGTGGGACAAACGGCATCCTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 562 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 298 CTTTTACCGTGGGACAAACGGCATCGTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 357 Query 563 TCTCTAACAAAAACCGCCAAGGATCGGACAGAGATGGACGTAGAAGCAGCAAGAAAGGAC 622 |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 358 TCTCTAACAAAAGCCGCCAAGGATCGGCCCGAGATGGACGTAGAAGCAGCAAGAAAGGAC 417 Query 623 CAAGATGGTTTTTTAGACGCAGGGCTTGTCCATGTTCTAGCTCCAAGTCCGTTCAGGTCC 682 | ||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||| Sbjct 418 CCAGATGGTTTTTTAGACGCAGGACTTGTCCCTGTTCTAGCTCTAAGTCGGTTCAGGTCC 477 Query 683 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAATCGTCTCGAACC 742 ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| Sbjct 478 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAGTCGTGTCGAACC 537 Query 743 GAATAGTTCATAGTCATCAGACGATATCTTCACCTGAGCCAATAAGATTAACGATCCCTT 802 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 538 GAATCGTTCATAGTCATCAGACGATATCTTCGCCTGAGCCAATAAGATTAACAATCCCTT 597 Query 803 CAAACACTGTGACTCGGTCCATCGATTACACTGCAAACAAAGAAGCTAGAGCTCCAGTTA 862 |||||||||||||||||||| | |||||| | ||||||| ||||||||||||||| |||| Sbjct 598 CAAACACTGTGACTCGGTCCGTAGATTACGCAGCAAACAGAGAAGCTAGAGCTCCGGTTA 657 Query 863 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATTATCAGAAAATCCCAAGAATC 922 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 658 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATCATCAGAAAATCCCAAGAATC 717 Query 923 CGGTTTTGAATCATATTAAACCGGTACGAATTGAACCGGCTCTGCTTCCGATTAAACCGG 982 |||||||| | | | | | | ||||||||| |||||||||||||||||||| Sbjct 718 CGGTTTTGG-T--T------C-G--A--A-TTGAACCGGTTCTGCTTCCGATTAAACCGG 762 Query 983 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACAAGCGACGCAA 1042 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 763 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACGAGCGACGCTA 822 Query 1043 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAAACC-GCAGCTCGTCCATGGGCT 1101 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 823 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAA-CCTGCAGCTCGTCCATGGGCT 881 Query 1102 CCACCAGTACGGGACTCGATGGAAGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 1161 ||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| Sbjct 882 CCACCAGTACGGGTCTCGATAGACGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 941 Query 1162 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCGGCCGTTGCAGCTAACTTC 1221 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 942 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCCGCGGTTGCAGCTAACTTC 1001 Query 1222 TCAAGAATTGCCTTGTCGTCATCGTCTACAGCATTTAGTGGTTACGATAAGAAGAGAACC 1281 |||||||| ||||||||||| ||||| || || ||||||||||||||||||| ||||||| Sbjct 1002 TCAAGAATCGCCTTGTCGTCCTCGTCGACGGCGTTTAGTGGTTACGATAAGAGGAGAACC 1061 Query 1282 GGTTTGTTGAACTGTCATTGTGAGAAGGCGGTTATGGTTA 1321 ||||||||||||||||| |||||||||||||||||||||| Sbjct 1062 GGTTTGTTGAACTGTCACTGTGAGAAGGCGGTTATGGTTA 1101 Score = 159 bits (86), Expect = 4e-38 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1364 TTCAAAACGACGTCGCGGGAAAGGTGTTGTGCAACAATGGCAGTTCTAAACTAAGCGTGA 1423 ||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1108 TTCAAAACGACTTCGCGGGAAAGGTGTTGTGCAGCAATGGCAATTCTAAACTAAGCGTGA 1167 Query 1424 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1458 ||||||||||||||||||||||||||||||||||| Sbjct 1168 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1202 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59573143180 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5