BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04200.1 Length=1251 Score E Sequences producing significant alignments: (Bits) Value Ahg939817 jgi|Araly1|939817|scaffold_600361.1 1541 0.0 > Ahg939817 jgi|Araly1|939817|scaffold_600361.1 Length=1222 Score = 1541 bits (834), Expect = 0.0 Identities = 939/990 (95%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 74 AAACCTTAAGAAATCATATCCAGAAACTCAATGGATCAACAAGGGATGGTCAAGAAAAGA 133 |||||||||||||||| || | ||| ||| ||||||||||||||||| |||||||||| Sbjct 4 AAACCTTAAGAAATCAAAT---G-AACACAAAGGATCAACAAGGGATGGCCAAGAAAAGA 59 Query 134 CTAGCCGTTCTCGTCGGCTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 193 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CTCGCCGTTCTCGTCGGGTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 119 Query 194 AATGATGTTCTAGCCATGAAAGAAACTATTTTGTCACGTTTCGGATTCAAACAAGACGAC 253 ||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| ||| Sbjct 120 AATGATGTTTTAGCCATGAAAGAAACTATTATGTCCCGTTTCGGATTCAAAGAAGAGGAC 179 Query 254 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 239 Query 314 GCTGCTCTACGTAGGATGGTGGATAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 373 ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 240 GCTTCTCTACGTAGGATGGTGGGTAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 299 Query 374 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAACAA 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 300 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAGCAA 359 Query 434 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCCGAGAATTG 493 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 360 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCAGAGAATTG 419 Query 494 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 479 Query 554 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTCTTCGGTCTCCAGCAACATATCT 613 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 480 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTTTTCAGTCTCCAGCAACATATCT 539 Query 614 CCGG-CTATTGAGACAACGAACAAGACTATAACATCACGTGCCTTGCCCTTCAAGGCAGT 672 |||| | || ||||||||||| ||||| ||||| ||||||||||| |||||||||| ||| Sbjct 540 CCGGAC-ATGGAGACAACGAATAAGACAATAACTTCACGTGCCTTACCCTTCAAGGAAGT 598 Query 673 CCTTGACCACTTGAGTTCTCTCACCGGAATTACAACTTCCGACATCGGCACACATCTACT 732 ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| Sbjct 599 TCTTGACCACTTGAGTTCTCTCACGGGAATAACAACTTCCGACATCGGCACACACCTACT 658 Query 733 TGAGCTCTTTGGCCGCGATGCTGGTCTTAAGTTTCGGTTACCGGCAATGGATCTAATGGA 792 ||||||||||||| |||||||||| ||||| || |||||||| || |||||||||||||| Sbjct 659 TGAGCTCTTTGGCGGCGATGCTGGCCTTAAATTCCGGTTACCTGCGATGGATCTAATGGA 718 Query 793 TCTTTTGGAGACTATGACGGCCCGTGAAAAACACGTGGACTCAGGGATATTGATGAGCGG 852 ||||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||||| Sbjct 719 TCTTTTGGAGACTATGACGGCCCGTGAAAGACACGTGGATTCTGGGATATTGCTGAGCGG 778 Query 853 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGGAACGGGAAAGCGTACGGAGC 912 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 779 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGCAATGGGAAAGCGTACGGAGC 838 Query 913 GTTTAGCAACGCGATTCAAAGGGTGTTGAACGAAAATGAAGGTGCCATGAAGAACAAGCA 972 |||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||| Sbjct 839 GTTTAGCAACGCGATTCAGAGGGTGTTGAAAGAAAAAGAAGGTGCCTTGAAGAACAAGCA 898 Query 973 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 958 Query 1033 CTACTGCAGCGACCAGAACGCAGACGCGAC 1062 ||||||||||||||||||||| || ||||| Sbjct 959 CTACTGCAGCGACCAGAACGCGGAGGCGAC 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46738696242 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5