BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04200.1
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939817 jgi|Araly1|939817|scaffold_600361.1 1541 0.0
> Ahg939817 jgi|Araly1|939817|scaffold_600361.1
Length=1222
Score = 1541 bits (834), Expect = 0.0
Identities = 939/990 (95%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 74 AAACCTTAAGAAATCATATCCAGAAACTCAATGGATCAACAAGGGATGGTCAAGAAAAGA 133
|||||||||||||||| || | ||| ||| ||||||||||||||||| ||||||||||
Sbjct 4 AAACCTTAAGAAATCAAAT---G-AACACAAAGGATCAACAAGGGATGGCCAAGAAAAGA 59
Query 134 CTAGCCGTTCTCGTCGGCTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 193
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCGCCGTTCTCGTCGGGTGCAACTACCCTAACACAAGGAACGAGCTTCACGGTTGCATC 119
Query 194 AATGATGTTCTAGCCATGAAAGAAACTATTTTGTCACGTTTCGGATTCAAACAAGACGAC 253
||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| |||
Sbjct 120 AATGATGTTTTAGCCATGAAAGAAACTATTATGTCCCGTTTCGGATTCAAAGAAGAGGAC 179
Query 254 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTGAGGTGCTAACGGACGAGCCAGAATCAAAGGTAAAGCCGACAGGTGCCAACATCAAG 239
Query 314 GCTGCTCTACGTAGGATGGTGGATAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 373
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTTCTCTACGTAGGATGGTGGGTAAAGCTCAAGCCGGATCTGGAGACATCTTGTTCTTC 299
Query 374 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAACAA 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 300 CACTACAGTGGCCATGGAACTCGTATTCCTTCGGTTAAATCTGCTCATCCTTTTAAGCAA 359
Query 434 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCCGAGAATTG 493
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 GACGAAGCTATTGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCAGAGAATTG 419
Query 494 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCAATCAACTTCCTAAAGGAACAAGCTTTACCATGATCTCTGATTCTTGCCATAGTGGT 479
Query 554 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTCTTCGGTCTCCAGCAACATATCT 613
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 480 GGTCTCATCGACAAGGAGAAAGAACAGATCGGACCCTTTTCAGTCTCCAGCAACATATCT 539
Query 614 CCGG-CTATTGAGACAACGAACAAGACTATAACATCACGTGCCTTGCCCTTCAAGGCAGT 672
|||| | || ||||||||||| ||||| ||||| ||||||||||| |||||||||| |||
Sbjct 540 CCGGAC-ATGGAGACAACGAATAAGACAATAACTTCACGTGCCTTACCCTTCAAGGAAGT 598
Query 673 CCTTGACCACTTGAGTTCTCTCACCGGAATTACAACTTCCGACATCGGCACACATCTACT 732
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 599 TCTTGACCACTTGAGTTCTCTCACGGGAATAACAACTTCCGACATCGGCACACACCTACT 658
Query 733 TGAGCTCTTTGGCCGCGATGCTGGTCTTAAGTTTCGGTTACCGGCAATGGATCTAATGGA 792
||||||||||||| |||||||||| ||||| || |||||||| || ||||||||||||||
Sbjct 659 TGAGCTCTTTGGCGGCGATGCTGGCCTTAAATTCCGGTTACCTGCGATGGATCTAATGGA 718
Query 793 TCTTTTGGAGACTATGACGGCCCGTGAAAAACACGTGGACTCAGGGATATTGATGAGCGG 852
||||||||||||||||||||||||||||| ||||||||| || ||||||||| |||||||
Sbjct 719 TCTTTTGGAGACTATGACGGCCCGTGAAAGACACGTGGATTCTGGGATATTGCTGAGCGG 778
Query 853 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGGAACGGGAAAGCGTACGGAGC 912
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 779 GTGTCAGGCGGATGAGACGTCTGCTGACGTCGGCGTTGGCAATGGGAAAGCGTACGGAGC 838
Query 913 GTTTAGCAACGCGATTCAAAGGGTGTTGAACGAAAATGAAGGTGCCATGAAGAACAAGCA 972
|||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 839 GTTTAGCAACGCGATTCAGAGGGTGTTGAAAGAAAAAGAAGGTGCCTTGAAGAACAAGCA 898
Query 973 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACTAGTGATGATGGCAAGGGATGTGCTTGAGAGACTAGGGTTTCATCAACACCCTTGTCT 958
Query 1033 CTACTGCAGCGACCAGAACGCAGACGCGAC 1062
||||||||||||||||||||| || |||||
Sbjct 959 CTACTGCAGCGACCAGAACGCGGAGGCGAC 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5