BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04230.2
Length=2485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487203 jgi|Araly1|487203|fgenesh2_kg.6__337__AT5G04230.1 3027 0.0
Ahg928723 jgi|Araly1|928723|scaffold_301180.1 1275 0.0
> Ahg487203 jgi|Araly1|487203|fgenesh2_kg.6__337__AT5G04230.1
Length=2113
Score = 3027 bits (1639), Expect = 0.0
Identities = 1968/2125 (93%), Gaps = 30/2125 (1%)
Strand=Plus/Plus
Query 198 ATGGAGTTTCGTCAACCAAACGC-A----A-CAGCATTGAGCGACCCACTTAACTGGAAT 251
||||||||| ||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTTTTGTCAACCAAACGCAACCGCAGCAGCATTGAGCGACCCACTTAACTGGAAT 60
Query 252 GTAGCGGCGGAGGCTTTAAAAGGGAGCCACCTGGAGGAGGTGAAGAAGATGGTGAAGGAT 311
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGCAGCGGAGGCTTTAAAAGGGAGCCACCTGGAGGAGGTGAAGAAGATGGTGAAGGAT 120
Query 312 TATAGGAAAGGAACGGTGCAGCTAGGCGGAGAGACGCTGACCATCGGTCAGGTTGCGGCA 371
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 TATAGGAAAGGAACGGTGCAGCTCGGCGGAGAGACGCTGACCATCGGTCAGGTTGCGGCG 180
Query 372 GTAGCGAGTGGAGGACCGACAGTGGAGCTTTCTGAGGAGGCTCGGGGCGGTGTGAAGGCG 431
|| |||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 181 GTGGCGAGTGGAGGAACGACAGTGGAGCTTTCTGAGGAGGCTCGTGCCGGTGTAAAGGCG 240
Query 432 AGTAGTGACTGGGTGATGGAGAGCATGAACCGTGATACGGACACATATGGGATCACCACT 491
|||||||| |||||||||||||||||||| |||| ||| ||||| ||||| |||||||||
Sbjct 241 AGTAGTGAGTGGGTGATGGAGAGCATGAATCGTGGTACCGACACTTATGGTATCACCACT 300
Query 492 GGATTTGGTTCATCTTCTCGTAGGAGGACTGACCAAGGTGCTGCTCTTCAAAAAGAGCTT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGATTTGGTTCATCTTCTCGTAGGAGGACTGACCAAGGTGCTGCTCTTCAAAAAGAGCTT 360
Query 552 ATTAGGTATTTGAACGCCGGGATATTCGCTACCGGCAACGAAGATGACGACAGGTCAAAC 611
|||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 361 ATTAGGTACTTGAACGCCGGGATATTCGCTACCGGCGACGGAGATGACGACACGTCAAAC 420
Query 612 ACGCTTCCCCGGCCGGCTACTAGAGCAGCGATGCTCATCCGTGTAAACACCCTCCTCCAA 671
||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 ACGCTTCCCCGGCTGGCTACAAGAGCGGCGATGCTCATCCGCGTAAACACCCTCCTCCAA 480
Query 672 GGCTACTCTGGTATACGCTTTGAGATCCTCGAAGCCATCACAACACTCCTCAACTGCAAA 731
|||||||||||||||||||||||||| |||||||||||||||| | |||||||| | |||
Sbjct 481 GGCTACTCTGGTATACGCTTTGAGATACTCGAAGCCATCACAAAATTCCTCAACCGGAAA 540
Query 732 ATTACACCGCTCCTTCCTCTCCGAGGCACCATTACCGCCTCCGGGGATCTCGTTCCGTTA 791
|| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 541 ATCACACCGCTCCTCCCTCTCCGAGGCACCATTACCGCCTCCGGCGACCTCGTTCCATTA 600
Query 792 TCCTATATCGCTGGATTCCTCATCGGGCGCCCCAACTCCCGATCCGTGGGCCCCTCTGGC 851
|| ||||| | |||||| |||||||||||||||||||| ||||| ||||||| || |||
Sbjct 601 TCGTATATTGTTGGATTTCTCATCGGGCGCCCCAACTCACGATCTTTGGGCCCATCCGGC 660
Query 852 GAGATCCTCACTGCCTTGGAGGCCTTCAAGCTCGCTGGAGTATCGTCTTTTTTCGAACT- 910
||||||||||| |||| ||||||||||||||| || |||||||| || |||||||||||
Sbjct 661 GAGATCCTCACCGCCTCGGAGGCCTTCAAGCTTGCCGGAGTATCATCCTTTTTCGAACTC 720
Query 911 CAGGCCTAAAGAAGGGCTTGCGCTCGTGAATGGGACTGCGGTGGGGTCTGCTTTAGCCTC 970
|| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 CA-GCCCAAGGAAGGGCTTGCGCTCGTGAATGGGACTGCGGTGGGATCTGCTTTAGCCTC 779
Query 971 TACGGTACTGTACGATGCCAACATTTTGGTGGTTTTCT-CCGAAGTTGCTTCCGCCATGT 1029
||| |||||||||||||||||||||||| |||||| | | || |||||||| |||||||
Sbjct 780 CACGTTACTGTACGATGCCAACATTTTGGCGGTTTT-TGCGGAGGTTGCTTCGGCCATGT 838
Query 1030 TTGCAGAGGTTATGCAGGGGAAACCAGAGTTTACCGATCATCTTACGCATAAACTCAAGC 1089
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 839 TTGCTGAGGTTATGCAGGGGAAACCGGAGTTTACGGATCATCTTACGCATAAACTCAAGC 898
Query 1090 ACCATCCTGGTCAGATCGAAGCCGCCGCTATCATGGAGCATATTC-TAGACGGAAGCTCT 1148
|||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 899 ACCATCCTGGTCAGATAGAAGCCGCCGCAATCATGGAGCATA-TCTTAGACGGAAGCTCT 957
Query 1149 TATGTAAAAGAAGCTCTACATCTCCACAAGATTGATCCGCTTCAGAAACCTAAACAAGAT 1208
||||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |
Sbjct 958 TATGTCAAAGAAGCTCAACATCTCCACAAGATTGATCCGCTTCAGAAACCTAAAC-A-A- 1014
Query 1209 CGGTATGTTCTTGGTTACGCTCTGCGAACATCTCCGCAATGGCTTGGACCGCAGATTGAG 1268
| | || |||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct 1015 --G-A---TC---GTTACGCTCTGCGAACGTCGCCGCAATGGCTCGGACCACAGATTGAG 1065
Query 1269 GTGATAAGAGCAGCGACTAAGATGATCGAACGTGAGATAAACTCAGTAAACGATAACCCT 1328
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1066 GTGATAAGAGCAGCGACAAAGATGATCGAACGTGAGATAAACTCGGTAAACGATAACCCT 1125
Query 1329 TTGATCGATGTTTCAAGAAACAAAGCTATCCATGGTGGGAACTTCCAGGGGACACCAATT 1388
||||||||||||||| | ||||||||||| || |||||||| |||||||||||||| |||
Sbjct 1126 TTGATCGATGTTTCACGGAACAAAGCTATTCACGGTGGGAATTTCCAGGGGACACCGATT 1185
Query 1389 GGTGTCGCCATGGATAACACTCGTCTAGCACTTGCTTCTATCGGGAAGCTAATGTTCGCT 1448
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 GGTGTCGCCATGGATAACACTCGTCTAGCACTTGCTTCGGTCGGGAAGCTAATGTTCGCT 1245
Query 1449 CAGTTCACTGAACTCGTAAATGATTTCTACAACAACGGGTTACCCTCTAATCTATCTGGT 1508
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1246 CAGTTCACTGAACTCGTAAATGATTACTACAACAACGGGTTACCCTCTAATCTATCTGGC 1305
Query 1509 GGTAGAAACCCTAGTCTTGATTACGGGTTAAAAGGCGCAGAAGTCGCCATGGCTTCTTAT 1568
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1306 GGGAGAAACCCTAGTCTTGATTACGGGTTAAAAGGCGCAGAAGTAGCCATGGCTTCTTAT 1365
Query 1569 TGCTCAGAGCTTCAGTTCCTAGCAAATCCTGTGACGAACCATGTCGAAAGCGCTTCTCAA 1628
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||
Sbjct 1366 TGCTCAGAGCTTCAGTTCTTAGCTAATCCTGTGACGAACCATGTCGAAAGCGCCTCGCAA 1425
Query 1629 CACAATCAAGATGTTAACTCTCTTGGGCTGATCTCGAGCCGAACGACAGCAGAAGCTGTG 1688
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1426 CACAATCAAGATGTTAACTCTCTTGGGCTGATCTCGAGCCGAAAGACAGCAGAAGCTGTG 1485
Query 1689 GTTATCCTCAAGCTCATGTCAACGACTTACTTGGTAGCTTTGTGCCAAGCCTTTGATCTG 1748
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1486 GTTATCCTCAAGCTCATGTCAACAACTTACTTGGTAGCTTTGTGCCAAGCCTTTGATCTG 1545
Query 1749 AGACACCTTGAAGAAATTCTCAAGAAAGCGGTTAATGAGGTTGTGAGCCACACTGCCAAA 1808
|||||||||||||||||||| || ||||||||||| |||| ||||||||| |||||||||
Sbjct 1546 AGACACCTTGAAGAAATTCTAAAAAAAGCGGTTAAGGAGGCTGTGAGCCAGACTGCCAAA 1605
Query 1809 AGCGTTCTAGCAATCGAACCATTCCGCAAACACGACGATATTCTTGGAGTTGTCAACCGC 1868
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1606 AGCGTTCTAGCTATCGAACCATTCCGCAAACACGACGACATTCTCCGAGTTGTCAACCGC 1665
Query 1869 GAATACGTCTTCTCCTATGTTGATGACCCAAGC-AGCCTCACTAACCCTTTAATGCAGAA 1927
||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||
Sbjct 1666 GAATACGTCTTCTCCTATGTTGATGACCCAA-CTAGCCTCACTAACCCTCTAATGCAGAA 1724
Query 1928 GCTGAGACATGTCCTCTTCGACAAAGCTTTAGCTGAACCGGAAGGCGAGACCGACACGGT 1987
|||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1725 GCTGAGGCACGTCCTCTTCGACAAAGCTTTAGCTGAACTGGAAGGCGAGACAGACACGGT 1784
Query 1988 TTTTCGGAAAATCGGAGCGTTCGAGGCCGAGCTGAAATTTCTCCTCCCTAAAGAAGTGGA 2047
||| || ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 1785 TTTCCGAAAAATCGGAGCGTTCGAAGCCGAGCTGAAATCTCTCCTTCCTAAAGAAGTGGA 1844
Query 2048 ACGAGTCAGGACAGAGTACGAGAACGGTACATTTAATGTGGCTAACCGAATCAAGAAGTG 2107
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1845 AAGAGTCAGGACAGAGTACGAGAACGGTACATCTAATGTGGCTAACCGAATCAAGAAGTG 1904
Query 2108 TCGATCGTATCCGCTGTACCGGTTTGTGCG-GAATGAACTCGAGACGAGGTTGCTAACCG 2166
|||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1905 TCGATCGTATCCGCTGTACCGGTTTGTGCGAGAC-GAACTCGAGACTAGGTTGCTAACCG 1963
Query 2167 GAGAGGATGTTCGGTCACCGGGAGAGGATTTTGACAAAGTCTTCAGGGCTATATCTCAAG 2226
||||| |||| |||||||| ||||||||||||||||||||||||| || || |||||||
Sbjct 1964 GAGAGAATGTCCGGTCACCAGGAGAGGATTTTGACAAAGTCTTCACAGCGATCTCTCAAG 2023
Query 2227 GAAAACTCATAGATCCTCTGTTTGAATGTCTGAAAGAGTGGAACGGTGCTCCGATTTCTA 2286
| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||| ||
Sbjct 2024 GCAAACTCATAGACCCTCTGTTCGAATGTCTCAAAGAGTGGAACGGAGCTCCGATTCCTC 2083
Query 2287 TCTGCTAAAACGTTT-CGTCAGATC 2310
||||||| |||||| | |||||||
Sbjct 2084 TCTGCTAGAACGTTCAC-TCAGATC 2107
> Ahg928723 jgi|Araly1|928723|scaffold_301180.1
Length=2166
Score = 1275 bits (690), Expect = 0.0
Identities = 1670/2128 (78%), Gaps = 127/2128 (6%)
Strand=Plus/Plus
Query 243 AACTGGAATGTAG-CGGCGGAGGCTTTAAAAGGGAGCCACCTGGAGGAGGTGAAGAAG-A 300
|||||||| | | ||||||| ||||| |||||||||||| |||| |||||||| | | |
Sbjct 73 AACTGGAACG-CGACGGCGGACGCTTTGAAAGGGAGCCACTTGGACGAGGTGAA-ACGAA 130
Query 301 TGGT-GAAGGATTATAGGAAAGGAACGGTGCAGCTAGGCGGAGAGACGCTGACCATCGGT 359
|||| ||| |||||||||||||| ||||| || |||| || |||||| |||| || |||
Sbjct 131 TGGTGGAA-GATTATAGGAAAGGGGCGGTGAAGTTAGGAGGTGAGACGTTGACGATTGGT 189
Query 360 CAGGTTGCGGCAGTAGC--GA-G-TG-G-AGGA-CCG--ACAGTGGAGCTTTCTGAGGAG 410
|| || || || || || || | | | |||| | || |||||||| ||||||
Sbjct 190 CAAGTCGCCGCCGTCGCTAGAGGAGGAGAAGGAGGAGTTACGGTGGAGCTGGAGGAGGAG 249
Query 411 GCTCGGGGCGGTGTGAAGGCGAGTAGTGACTGGGTGATGGAGAGCATGAACCG-TGATAC 469
||||| | ||| || ||||||||||| || ||||||||||||||||||||||| || ||
Sbjct 250 GCTCGTGCCGGAGTCAAGGCGAGTAGCGAATGGGTGATGGAGAGCATGAACCGAGGA-AC 308
Query 470 GGACACATATGGGA-TCACCACTGGATTTGGTTCAT-CTTCTCGTAGGAGGACTGACCAA 527
|||| ||| ||| ||||||| || |||||| | | |||| | ||| || ||| | |||
Sbjct 309 CGACAGTTAT-GGAGTCACCACAGGGTTTGGTGC-TACTTCCCATAGAAGAACTAAACAA 366
Query 528 GGTGCTGCTCTTCAAAAAGAGCTTATTAGGTAT-TTGAACGCCGGGATA-TTCGCTACCG 585
|| | ||| |||||||| ||||||||||||| | ||||||||||| ||| || || | ||
Sbjct 367 GGCGGTGCACTTCAAAATGAGCTTATTAGGT-TCTTGAACGCCGGAATATTTGGC-ATCG 424
Query 586 GCAACGAAGATGACGACAGGTCAAACACGCTT-CCCCGGCCGGCTACTAGAGCAGCGATG 644
|| || || ||| || | || ||||| || || |||| | || ||||| || |||
Sbjct 425 GCGCCG--GA-GAC-AC--GACACACACG-TTGCCAAAGCCGACGACAAGAGCGGCAATG 477
Query 645 CTCATCCGTGTAAACACCCTCCTCCAAGGCTACTCTGGTATACGCTTTGAGATCCTCGAA 704
||| ||||||| ||||| ||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 478 CTCGTCCGTGTCAACACTCTCCTCCAAGGCTACTCCGGTATACGCTTCGAGATTCTCGAA 537
Query 705 GCCATCACAACA-CTCCTCAACTGCAAAATTACACCGCT-CCTTCCTCTCCGAGGCACCA 762
||||| |||| | || |||||| | |||| || ||| | ||| ||||| || |||||||
Sbjct 538 GCCATTACAA-AGCTTCTCAACCACGAAATCACTCCG-TGCCTCCCTCTTCGTGGCACCA 595
Query 763 TTACCGCCTCCGGGGATCTCGT-TCCGT-TATCCTATATCGCTGGATTCCTCATCGGGCG 820
| || |||||||| || | | | ||| | | || || ||||| ||| |||||| ||| ||
Sbjct 596 TCACGGCCTCCGGTGA-C-CTTATCCCTCTCTCTTACATCGCCGGACTCCTCACCGGCCG 653
Query 821 CCCCAACTCCCGATCCGTGGG-CCCCTCTGGCGAGATC-CTCACTGCCT-TGGAGGCCTT 877
|| |||||| | ||||||| ||| || || |||| | |||||||||| | ||||||||
Sbjct 654 TCCTAACTCCAAAGCCGTGGGTCCCTTC-GGTGAGA-CTCTCACTGCCTCT-GAGGCCTT 710
Query 878 CAAGCTCGCTGGAGTATCGTCTTTTTTCGAAC-TCAGGCCTAAAGAAGGGCTTGCGCTCG 936
|||||||| ||||||||||||||||| || | ||| |||||| ||||| || || || |
Sbjct 711 TAAGCTCGCGGGAGTATCGTCTTTTTTTGAGCTTCA-GCCTAAGGAAGGACTAGCACTTG 769
Query 937 TGAATGGGACTGCGGTGGGGTCTGCTTTAGCCTCTACGGTACTGTACGATGCCAACATTT 996
|||| ||||| ||||| || || | ||| ||||| ||||| |||| |||||| || ||||
Sbjct 770 TGAACGGGACAGCGGTTGGATCGGGTTTGGCCTCGACGGTTCTGTTCGATGCAAATATTT 829
Query 997 TGG-TGGTTTTCTCCGAAGTTGCT-TCCGCCATGTTTGCAGAGGTTATGCAGGGGAAACC 1054
||| | ||||| || || ||| | || |||||||| |||||||||||||| ||||||||
Sbjct 830 TGGCT-GTTTTGTCGGAGGTT-ATGTCTGCCATGTTCGCAGAGGTTATGCAAGGGAAACC 887
Query 1055 AGAGTTTACCGATCATCTTACGCATAAACTCAAGCACCATCCTGGTCAGATCGAAGCCGC 1114
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 888 GGAGTTTACCGACCATCTTACGCATAAACTCAAGCACCATCCCGGTCAGATCGAAGCAGC 947
Query 1115 CGCTATCATGGAGCATAT-TCTAGACGGAAGCTCTTATGTAAAAGAAGCTCTACATCTCC 1173
|| || ||||| ||||| | | |||||||||||||| || |||||||||| || | |||
Sbjct 948 GGCGATTATGGAACATATAT-TGGACGGAAGCTCTTACGTTAAAGAAGCTCAACTTATCC 1006
Query 1174 AC-AAGATTGATCCGCTTCAGAAACCTAAACAAGATCGGTATGTTCTTGGTTACGCTCTG 1232
|| || || ||||| ||||| |||||||||||||||||||| | ||| | ||| |
Sbjct 1007 ACGAA-ATGGATCCTCTTCAAAAACCTAAACAAGATCGGTACG--CTT--T-ACG-T--- 1056
Query 1233 CGAACATCTCCGCAATGGCTTGGACCGCAGATTGAGGTGATAAGAGCAGCGACTAAGATG 1292
| |||| |||||||||||||| ||||||||||| ||||| ||| | || ||||| |||
Sbjct 1057 --A-CATCGCCGCAATGGCTTGGCCCGCAGATTGAAGTGATCAGATCGGCCACTAAAATG 1113
Query 1293 ATCGAACGTGAGATAAACTCAGTAAACGATAACCCTTTGATCGATGTTTCAAGAAACAAA 1352
|| || |||||||| ||||| || ||||||||||||||||| ||||| ||||| || ||
Sbjct 1114 ATTGAGCGTGAGATCAACTCGGTTAACGATAACCCTTTGATAGATGTGTCAAGGAATAAG 1173
Query 1353 GCTATCCATGGTGGGAACTTCCAGGGGACACCAATTGGTGTCGCCATGGATAACACTCGT 1412
||| | || || ||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1174 GCTTTGCACGGCGGGAATTTCCAAGGGACACCAATTGGTGTCGCCATGGATAATTCTCGT 1233
Query 1413 CTAGC-ACTTGCTTCTATCGGGAAGCTAATGTTCGCTCAGTTCACTGAACTCGTAAATGA 1471
||||| | ||||||| || ||||| || |||||||| ||||| ||||||| || || ||
Sbjct 1234 CTAGCCA-TTGCTTCGATAGGGAAACTCATGTTCGCCCAGTTTTCTGAACTAGTGAACGA 1292
Query 1472 TTTCTACAACAACGGGTTACCCTCTAATCTATCTGGTGGTAGAAACCCTAGTCTTGATTA 1531
|||||||||||| || || || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 1293 TTTCTACAACAATGGTTTGCCTTCTAATCTATCCGGTGGGAGAAACCCTAGTCTTGATTA 1352
Query 1532 CGGGTTAAAAGGCGCAGA-AGTCGCCATGGCTTCTTATTGCTCAGAGCTTCAGTTCCTAG 1590
||| || |||||||| || | | |||||||||||||||||||| |||||||||||| | |
Sbjct 1353 CGGATTTAAAGGCGCGGAGA-TAGCCATGGCTTCTTATTGCTCCGAGCTTCAGTTCTTGG 1411
Query 1591 CAAATCCTGTGACGAACCATGTCGAAAGCGCTTCTCAACACAATCAAGATGTTAACTCTC 1650
| ||||| ||||| ||||||||| ||||||| || || || ||||||||||| || |
Sbjct 1412 CTAATCCGGTGACCAACCATGTCCAAAGCGCAGAGCAGCATAACCAAGATGTTAATTCCC 1471
Query 1651 TTGGGCTGATCTCGAGCCG-AACGACAGCAGAAGCTGTGGTTATCCTCAAGCTCATGTCA 1709
| ||| ||||||| ||||| || || |||||||| || | |||||||||||| |||||
Sbjct 1472 TAGGGTTGATCTCAAGCCGGAAA-ACCGCAGAAGCAGTCGATATCCTCAAGCTAATGTCC 1530
Query 1710 ACGACTTACTTGGTAGCTTTGTGCCAAGCCTTTGATCTGAGACACCTTGAAGA-AATTCT 1768
||||| || || || || ||||||||||| ||||||| ||||| |||||||| ||| ||
Sbjct 1531 ACGACCTATTTAGTCGCGCTGTGCCAAGCCATTGATCTAAGACATCTTGAAGAGAAT-CT 1589
Query 1769 CAAGAAAGCGGTTAA-T--G-AG-GT-T--G-TGAGCCACACTGC-CAAAAGCGTTCTAG 1818
|||||||| |||| | | || | | | || || | || | | || |||| |
Sbjct 1590 GAAGAAAGCAATTAAATCTGCAGTGAGTCAGGTG-GCGAAACGGGTCTTAACCGTTGGGG 1648
Query 1819 -CAATCGA-A-C--CATTCCG-CAAA---CAC-GA-CG--ATATTCTTGGAGTTGTCAAC 1865
|||| | | | ||| || | | ||| || || || |||| ||| || ||
Sbjct 1649 TCAATGGTGAGCTACAT-CCTTCGAGGTTCACTGAACGCGATGTTCTCCAAGTGGTTGAC 1707
Query 1866 CGCGAATACGTCTTCTCCTATGTTGATGA-CCCAAGCAGCCTCACTAACCCTTTAATGCA 1924
|| |||||||| ||||| || | || || ||| ||||||||||| |||| ||||||||
Sbjct 1708 CGAGAATACGTGTTCTCATACGCAGACGATCCCT-GCAGCCTCACTTACCCGTTAATGCA 1766
Query 1925 GAAGCTGAGACATGTCCTCT-TCGA-CAAAGCTTTAGCTGAACCGGAAGGCGAG---A-- 1977
||| || ||||| | || | | || || |||||||| || || ||| ||||| |
Sbjct 1767 GAAACTTAGACACATTCT-TGTAGATCAC-GCTTTAGCGGATCCAGAACGCGAGGCCAAT 1824
Query 1978 -CCG--ACA-CGGTTTTTCGGAAAATCGGAGCGTTCGAGGCCGAGCTGAAATTTCTCCTC 2033
||| ||| | ||||| | |||||||||||| || ||| ||||||||||| | || |||
Sbjct 1825 TCCGCTACATCAGTTTTCCAGAAAATCGGAGCTTTTGAGTCCGAGCTGAAACTGCTTCTC 1884
Query 2034 CCTAAAGAAGTGGAACGAGTCAGGACAGAGTACGAG-AACGG-TACATTTAATGTGGCTA 2091
||||||||||||||||| ||| || ||||||||| || || | | | | | | ||||
Sbjct 1885 CCTAAAGAAGTGGAACGTGTCCGGGTTGAGTACGAGGAA-GGATCC-TCGACTATAGCTA 1942
Query 2092 ACCGAATCAAG-AAGTGTCGATCGTATCCGCTGTACCGGTTTGTGCGGAATGAACTCGAG 2150
|||| || ||| || ||||| || |||||||||||||||||||| || || || || ||
Sbjct 1943 ACCGGATTAAGGAA-TGTCGGTCTTATCCGCTGTACCGGTTTGTCCGCAACGAGCTAGAT 2001
Query 2151 AC-GAGGTTGCTAACCGGAGAGGATGTTCGGTCACCGGGAGAGGATTTTGACAAAGTCTT 2209
|| || | ||| || |||||| |||||||||| ||||||||||| ||||| ||||| ||
Sbjct 2002 ACTGAACT-GCTCACTGGAGAGAATGTTCGGTCGCCGGGAGAGGAGTTTGATAAAGTGTT 2060
Query 2210 CAGGGCTATATCTCAAGGAAAACTCATAGATCC-TCTGTTTGAATGTCTGAAAGAGTGGA 2268
| ||| || ||| | ||||| || || ||||| | |||| |||||||| || |||||||
Sbjct 2061 CTCGGCGATTTCTGATGGAAAGCTTATTGATCCGT-TGTTGGAATGTCTCAAGGAGTGGA 2119
Query 2269 ACGGTGCTCCGATTTCTATCTGCTAAAA 2296
|||| ||||||||| | ||||| |||||
Sbjct 2120 ACGGAGCTCCGATTCCGATCTGTTAAAA 2147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93663912455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5