BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04250.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939822 jgi|Araly1|939822|scaffold_600366.1 1696 0.0
Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1 63.9 3e-09
> Ahg939822 jgi|Araly1|939822|scaffold_600366.1
Length=1078
Score = 1696 bits (918), Expect = 0.0
Identities = 1005/1048 (96%), Gaps = 2/1048 (0%)
Strand=Plus/Plus
Query 207 TTTGAATAAATGGGGTATGAGCCTGATCCAGATGCTCTTAGGTGGGGTCTTCATGATCTG 266
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 12 TTTGAATAAATGGGGTATGAGCCTGATCCCGATGCTCTTCGCTGGGGTCTTCATGATCTG 71
Query 267 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCTGGT 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 72 GAGGTTTGTACACTTACAAATGCTGGTTCTTGCTCTAGTGTAACAAGGTATGAGTCAGGT 131
Query 327 GGTGGTGGTACTCAAGGCTATGTTAGAGAAGGTTACAATCAGCCTGTGACTGGTTATGTT 386
|||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 132 GGTGCTGGTACTCAAGGCTATGTTAGAGAAGGTTATAATCAGCCTTTGACTGGTTATGTA 191
Query 387 GACAATGATGCGGTGATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 446
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GACAATGATGCGGCAATTGCTCAGTTTTATCAAGACGAATTGTCTAGAGTTGCTCGAGCC 251
Query 447 GAAGCATCGGGGATCAATAGTCTTAGTCCTACTTCTGTTGTTGCACAAGACTGGCCTCAT 506
||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||
Sbjct 252 GAAGCATCGGGCCTCAATAATCTTAGTCCTACTTCTGTTGTTGAACAAGAGTGGCCTCAT 311
Query 507 CCTCATCAAGGACAGGAAAATCAAGGGGAAGCCATTGATATTA-CTCAGGAAAGTGATAT 565
|||| |||||| |||||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 312 CCTCGTCAAGGGCAGGAAAATCAAGGGGAAGCCATTGATA-TATCCCGGGAAAGTGATAT 370
Query 566 TCTTCATAATCATAACGGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTGAAGG 625
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 371 TCTTCATGATCATAACTGTAACATGGAAGATAAGAATGTTGCAAGGATAAGATTTCAAGG 430
Query 626 AGGGCAAAGTTCCCCATCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 685
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 AGGACAAAGTTCCCCACCTCGTGATGATGACTCAGTTTGTTCTGTAGAAATAGAAGAAGA 490
Query 686 ATCTTGGTCAGAGGTTGGGAAGCGACTGAACCAAATGATACCTATTGCTCATGTGCCGAA 745
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 491 ATCTTGGTCAGAGGTTGGGAAGCGACTGAATCAAATGATACCTATTGCTCACGTGCCGAA 550
Query 746 AATCAATGGGGAATTACCGTCAGAGGATGAGCAGATTTCTGATCATGAACGGCTATTTCA 805
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 551 AATCAATGGGGAATTACCGTCAGAGGATGAACAGATATCTGATCATGAACGGCTATTTCA 610
Query 806 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAACTGCCAGTT 865
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 611 GAGATTACAGCTTTATGGCTTGGTGGAGAACAAGATTGAAGGAGATGGAAATTGTCAGTT 670
Query 866 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACATCATAATTTTGTCAGAGAACA 925
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 671 TCGGTCACTATCAGACCAGCTTTACCGCTCTCCAGAACACCATAACTTTGTCAGAGAACA 730
Query 926 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AGTTGTTAATCAGCTTGCATATAATCGAGAGATATATGAAGGTTATGTTCCAATGGCGTA 790
Query 986 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 CAATGACTATCTTAAAGCAATGAAACGGAATGGAGAATGGGGTGATCACGTTACTCTTCA 850
Query 1046 GGCTGCTGCGGATTTGTTTGGTGTTCGGATGTTTGTGATAACTTCATTCAAGGATACATG 1105
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 851 GGCTGCTGCGGATTGGTTTGGTGTTCGGATGTTTGTGATAACGTCATTCAAGGATACATG 910
Query 1106 CTACATTGAGATCTTGCCTCATTTTCAGAAGTCTAATCGCCTTATATGTTTAAGCTTCTG 1165
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 911 TTACATTGAGATCTTGCCGCATTTTCAGAAGTCTAATCGCCTTATATGTTTGAGCTTCTG 970
Query 1166 GGCTGAGGTTCATTACAATTCAATCTACCCTGAAGGAGAGCTGCCGATACCAGAAGGCAA 1225
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 971 GGCTGAGGTTCATTACAATTCAATCTATCCTGAAGGAGAGCTGCCCATACCGGAAGGCAA 1030
Query 1226 GAAGAAGAAGAAATATTGGGTATTCTGA 1253
||||||||||||||||||||| ||||||
Sbjct 1031 GAAGAAGAAGAAATATTGGGTTTTCTGA 1058
> Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1
Length=830
Score = 63.9 bits (34), Expect = 3e-09
Identities = 46/51 (90%), Gaps = 4/51 (8%)
Strand=Plus/Minus
Query 1410 CAATAAAAGTTGTATTGATCTTATAAATAAG-A-G-GTTTACA-TTACATT 1456
||||||||||||||||||||||||||||||| | | || |||| |||||||
Sbjct 830 CAATAAAAGTTGTATTGATCTTATAAATAAGTAAGAGTCTACAATTACATT 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5