BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04260.1
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1 1016 0.0
> Ahg487207 jgi|Araly1|487207|fgenesh2_kg.6__341__AT5G04260.1
Length=830
Score = 1016 bits (550), Expect = 0.0
Identities = 768/863 (89%), Gaps = 56/863 (6%)
Strand=Plus/Plus
Query 6 TGAAAGAGAATGTCAGAAATTGTAAATTTGTCATCATCTTTGAGATCTTTAAACCCAAAG 65
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TGAAAGAGAATGTCAGAAGTTGTAAATTTGTCATCATCTCTGAGATCTTTAAACCCAAAG 60
Query 66 ATCTCACCTTTGGTTCCTCCATA------TCGCCAAACCTCGAGCTCT-TTCTCTCGACC 118
|||||| |||||||||||||||| ||| ||||||||||||| | ||||||| |||
Sbjct 61 ATCTCAGCTTTGGTTCCTCCATATCTCTCTCGTCAAACCTCGAGCT-TATTCTCTCAACC 119
Query 119 GAGAAACTTCAAATATCATTCTTTTACCGATAAAATCTGTTTGGCAGCGGAGAGAATCCG 178
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGATACTTCAAATTTCATTCTTTTACCGATAAAATCTGTTTGGCAGCGGAGAGAATCCG 179
Query 179 AGCAGTCGATATCCAGAAGCAGGACGGTGGTTTGCAAGAGCTCGATGACTCGCCGGTGTC 238
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCAGTCGATGCCCTGAAGCAGGACGGTGGTTTGCAAGAGCTCGATGACTCGCCGGTGTC 239
Query 239 TGTTGAGCTCGGACCTATCTGTGGTGAGAGCCACTTCGATCAAGTGATGGAGGATGCTCA 298
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 240 CGTTGAGCTCGGACCGATCTGTGGCGAGAGCCACTTTGATCAAGTGATGGAGGAAGCTCA 299
Query 299 GAAGCTCGGTGAATCAGTTGTTATTGTCTGGATGGCTGCTTGGTGCAGGAAATGTATTTA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 GAAGCTCGGTGAATCAGTTGTTATTGTCTGGATGGCAGCTTGGTGCAGGAAATGTATTTA 359
Query 359 CTTGAAACCAAAACTCGAAAAGCTCGCTGCTGAATTCTATCCAAGACTGCGGTTTTATCA 418
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CTTGAAACCAAAACTCGAAAAGCTGGCTGCTGAATTCTATCCAAGACTGCGGTTTTATCA 419
Query 419 TGTTGATGTCAACGCTGTGCCATATAGACTTGTTTCCCGTGCAGGAGTTACGAAAATGCC 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 420 TGTTGATGTCAACGCTGTGCCATATAGACTTGTTTCCCGTGCAGGAGTTACGGTAA-GCC 478
Query 479 G-ACGATTCAGCTATGGAGAGATGGCCAGAAACAAGCTGAAGTTATTGGCGGCCACAAAG 537
|| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 479 CTACTCTGCAGCTATGGAGAGATGGTCAGAAACAAGCTGAAGTTATCGGCGGCCACAAAG 538
Query 538 CGCATTTCGTGGTTAACGAAGTCAGGGAAATGATAGAGAACGATTCAATCACTTGAATTG 597
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 539 CGCATTTTGTGGTTAACGAAGTCAGGGAAATGATAGAGAACGATTCAATCA---G--TTG 593
Query 598 AAGGTTTCAAGACTCTGCTCTTTTTCCTCAGATTGTTCTTAGtttttttGGGGTCCCTCA 657
|| || | | | | || ||||||||||||||||||||||| |||||| ||||
Sbjct 594 AA--TT----G--T-T--T-TT---CCTCAGATTGTTCTTAGTTTTTT-GGGGTCACTCA 637
Query 658 TAGGAATGTTCAGTTATGTGACTAT-TCT-CTTTATCGAAGATTGGTCTTGTTTTT--AT 713
|||||||||||||||||| || ||| | | || || | |||||||||||||||| ||
Sbjct 638 TAGGAATGTTCAGTTATGGGAGTATGTGTTCTGTA--GTTGATTGGTCTTGTTTTTTTAT 695
Query 714 CTGTT-TTGTAAGTAAGGGATACACACATTGAGGCTTTGGTAGGTAAGCAAGAATTGTAG 772
||||| ||| | |||||||| | ||||||||||||||||||| | |||||||||||||
Sbjct 696 CTGTTCTTGGA-GTAAGGGA-A-ACACATTGAGGCTTTGGTA---A-GCAAGAATTGTAG 748
Query 773 CCATCCT-TCTTCAGATGATTCCCCCAAATGTAATGTAA----A--C-CT--CTTATTTA 822
||||||| | | | | |||| ||| |||||||||||||| | | || ||||||||
Sbjct 749 CCATCCTATAT-CGGTTGATACCCACAAATGTAATGTAATTGTAGACTCTTACTTATTTA 807
Query 823 TAAGATCAATACAACTTTTATTG 845
|||||||||||||||||||||||
Sbjct 808 TAAGATCAATACAACTTTTATTG 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31451406525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5