BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04270.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939824 jgi|Araly1|939824|scaffold_600368.1 1284 0.0
> Ahg939824 jgi|Araly1|939824|scaffold_600368.1
Length=805
Score = 1284 bits (695), Expect = 0.0
Identities = 766/800 (96%), Gaps = 5/800 (1%)
Strand=Plus/Plus
Query 28 TCCTTTTGGTGATTCTGGTGATGGGTTTCGTGTATTACGTCACACTGTTTGTTTTCATCG 87
|||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 1 TCCTTTCGGTGATTCTGGTGATGGGTTTCGTGTACTACGTCACACTCTTCGTTTTCATTG 60
Query 88 ATGATTGGGTTGGTTTACAAAGCTCAGCTGGGAAATTAAACGCCTTACTCTTCAGCTTAT 147
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 61 ATGATTGGGTTGGTTTACAAAGCTCAGCTGGGAAATTAAACGCCTTCCTCTTCAGCTTCT 120
Query 148 TGGCGTCTCTCTGTCTCTTCTCGCTCTCAATTTGCGTTCTTGTAGATCCAGGTCGTGTTC 207
|||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TGGCATCCCTCTGTCTATTCTCGCTCTCGATTTGCGTTCTTGTAGATCCAGGTCGTGTTC 180
Query 208 CTGCATCTTATGCTCCTGATGTTGAGGACTCTGGCTGGTCCAATAGTAACGTTACAGAAA 267
| |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 181 CAGCATCTTATGCTCCTGATGTCGAGGACTCTGGCTGGTCCAATGGTAACGCTACAGAAA 240
Query 268 CAAGGAAATGTGATAAGTGCTTTGCATATAAGCCTCTTCGGACTCACCATTGCCGGGTTT 327
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 241 CAAGGAAATGTGATAAGTGCTTTGCATATAAACCTCTTCGGACTCACCATTGCCGAGTTT 300
Query 328 GCAGAAGATGCGTCTTGAAGATGGACCATCATTGCCTCTGGATAAATAACTGTGTTGGTT 387
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 301 GCAGAAGATGCGTCTTGAAGATGGACCACCATTGCCTTTGGATAAATAACTGTGTTGGTT 360
Query 388 ATGCAAACTATAAGGCTTTCTTCATTCTTGTGTTTTATGCAACCGTGGCTTCCATCTACT 447
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 ATGCAAACTATAAGGCTTTCTTCATTCTTGTGTTTTATGCAACTGTGGCTTCCATCTACT 420
Query 448 CTACAGTGTTGCTGGTTTGCTGTGCATTCAAGAACGGAGATTCCTATGCGGGAAATGTTC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACAGTGTTGCTGGTTTGCTGTGCATTCAAGAACGGAGATTCCTATGCGGGAAATGTTC 480
Query 508 CGCTCAAAACTTTCATTGTTTCTTGTGGGATCTTCATGATCGGACTAAGCATAACACTTG 567
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACTCAAAACTTTCATTGTTTCTTGTGGGATCTTCATGATCGGACTAAGCATAACACTTG 540
Query 568 GGACTCTCCTTTGTTGGCATATCTACCTCATCACACACAATATGACCACCATTGAGCATT 627
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GGACTCTCCTTTGTTGGCATATCTACCTCATCGCACACAATATGACCACCATTGAGCATT 600
Query 628 ATGATTCAAAGCGGGCCTCATGGTTAGCTAGAAAATCAGGACAAAGCTATAGGCATCAAT 687
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 601 ATGATTCAAAGCGGGCCTCGTGGTTAGCTAGAAAATCAGGACAAAGCTTTAGGCATCAAT 660
Query 688 TCGATGTTGGCT-TTTACAAAAACCTCACCTCGGTGTTAGGCCCTAACATGATCAAATGG 746
||||| |||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 TCGATATTGG-TGTTTACAAAAACATCACCTCGGTGTTAGGCCCTAACATGATCAAATGG 719
Query 747 CTATGCCCCACATTTACTAGGAATCCTGAAGACGGTATTAGCTTTTCTGCATCGAGAGAC 806
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 CTATGCCCCACATTTACTGGGAATCCTGAAGACGGTATTAGCTTCTCTGCATCGAGAGAT 779
Query 807 AGCTAGC--AAAATATTTCA 824
||||||| |||| ||||||
Sbjct 780 AGCTAGCTTAAAA-ATTTCA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5