BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04280.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487209 jgi|Araly1|487209|fgenesh2_kg.6__343__AT5G04280.1 1661 0.0
> Ahg487209 jgi|Araly1|487209|fgenesh2_kg.6__343__AT5G04280.1
Length=1228
Score = 1661 bits (899), Expect = 0.0
Identities = 1155/1268 (91%), Gaps = 60/1268 (5%)
Strand=Plus/Plus
Query 20 TTCTTCGTGCCATTGATATTTTGAGAGGCGAAGGAAACAATACGATTCAG-----A---- 70
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 TTCTTCGTGCCATTGATATTTTGAGAGGCGAAGGAAACTATACGATTCAGATAATACTTT 60
Query 71 GAGAGACGAGTGAAAATGGCTGCAAAAGAAGGTAGTAGGATTTTTGTCGGTGGTTTATCG 130
|||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 61 GAGAGAAGAGTAAAAATGGCTGCGAAAGAAGGAAGTAGGATTTTTGTCGGTGGTTTATCG 120
Query 131 CCGGAAGTGACAGATAGAGACCTTGAAAGAGCTTTTAGCCGCTTCGGAGACATTCTCGAT 190
|||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 121 CCGGAAGTGACAGAGAGAGACCTTGAACGAGCTTTTAGCCGATTCGGAGACATTCTCGAT 180
Query 191 TGTCAGATCATGCTGGAAAGAGATACTGGTCGTTCACGTGGATTCGGGTTTATCACTTTT 250
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTCAGATAATGCTGGAAAGAGATACTGGTCGTTCACGTGGATTCGGGTTTATCACTTTT 240
Query 251 GCTGATCGCCGCGCTATGGATGAGTCCATCAGAGAGATGCATGGAAGGGACTTTGGTGAT 310
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGATCGTCGTGCTATGGATGAGTCCATCAGAGAGATGCATGGAAGGGACTTTGGTGAT 300
Query 311 CGGGTCATCTCAGTGAACAGAGCTGAACCAAAACTGGGGCGAGATGATGGAGAAAGTCAT 370
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 CGGGTCATCTCAGTGAACAGAGCTGAACCAAAGCTTGGGCGAGATGATGGAGAAAGTCAT 360
Query 371 GGCTCTAGAGGTGGCAGAGACAGTGGCTACTC-GATTGCTGGAAAAGGAAGCTTTGGTGG 429
|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 361 GGCTCTAGAGGTGGCAGAGACAGTGGCTACTCAG-TTACTGGAAAAGGAAGCTTTGGTGG 419
Query 430 AGGTGGAGGTGGAGGTGGGCGTGTTGGTGAAGATGAATGCTTCAAGTGTGGACGGGTTGG 489
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 420 AGGTGGAGGTGGC------CGTGTTGCTGAAGATGAATGCTTCAAATGTGGACGGGTTGG 473
Query 490 GCACTGGGCCCGTGATTGTCCTTCTGCTGGTGGTGGTCGTGGAGGACCTGTTGGTGGTTT 549
|||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||
Sbjct 474 GCACTGGGCCCGTGATTGCCCGTCTGCTGCTGGTGGTCGTGGTGGACCTGTTGGTGGTTT 533
Query 550 TTCTTCACGTGCTAGTGCGTATGGAGGATCTGATGGACGTGTTGACCGCTATGCTGACCG 609
|||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 534 TTCTTCCCGTGCTGGTGCGTTTGGAGGATCCGATGGACGTGTTGACCGCTATGCTGACCG 593
Query 610 TGACCGCTATGTGGACCGCGAACGATACATAGATGATCGATACGACGGTGCTGCACGCTA 669
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 594 TGACCGCTATGTGGACCGAGAACGTTACATAGATGATCGATACGACGGCGCTGCACGCTT 653
Query 670 TGGTGCTAGAGACAGGTTTGACAGCAGAGAAGCCTACATACCCCGTGATCGATACGCCAG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGTGCTAGAGACAGGTTTGACAGCAGAGAAGCCTACATACCCCGTGATCGATACGCCAG 713
Query 730 TGACAGGTATGCAGCCCCGGCTGATCGGTTTGCAGGTGGTGATAGATACAGCCGTGGATC 789
||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 714 TGACAGGTATGCAGCCCAGGCTGATAGGTTTGCAGGCGGTGATAGATACAGCCGTGGATC 773
Query 790 AGACCGTTATCCTCCAGGGAGCTATGACAAAGCTCGGTCCTTTGAGAGAGACATAGCCCC 849
|||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 774 AGACCGATATCCTCCAGGGAGCTATGACAAAGCCCGGTCCTTTGAGAGAGATGCAGTCCC 833
Query 850 GAGTGCAGGCAGTGACAGGTACGGTGGTGGTAGAGCTGGTGGTCCCATCCGTGGAGGAGG 909
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 834 GAGTGCAGGCAGTGACAGGTACGGTGGTGGTAGAGCTGGGGGTCCCATCCGTGGAGGAG- 892
Query 910 AGAGGAGGGAAGAGGGTTTAGAAGCAGAGCCGGTGCTCCTTATGAGAGACCGAGCAGAAG 969
| || ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 893 A-AG-AGGGAAGAGGGTTTAGAAGCAGAGCCGGTGCTCCTTATGAGAGGCCAAGCCGAAG 950
Query 970 TGGTGGTGGTGGAGCTTATCCGTCGTCGTCCACTTTTGACCGTTATTAAGACACATTAAT 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 TGGTGGTGGTGGAGCTTATCCGTCGTCGTCCACTTTTGACCGTTATTAAGA--------- 1001
Query 1030 GAAAGAAAGTGAGAATGATGCTTGGTTAGAGCTCT-ATACACTCAGTCGTGTGTGTTGCT 1088
|| ||| || |||||||||| || | ||||||||| || ||||||| ||
Sbjct 1002 GA-------TGA---TG---CTTGGTTAGAACTTTTATACACTCACTCTTGTGTGT-GCA 1047
Query 1089 TGTGGTAATGAATATCTCTGTAAGCGTTATAGGTGTAAAAGACTTGTCTTTTTTATTTAT 1148
|||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 1048 TGTGGTAATGAATATCTCTGTAAGCGTTCTAGGTGTAAAAGACTTGTCTTTTTC-TT-AT 1105
Query 1149 ATATGATTAGTTTGCGGACCTGTTTAGCTTTGTATTTTGATCCTTTATT-ATTTTTGGTT 1207
|| | | | ||||| |||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1106 AT-T-AGT--TTTGCAGACCTGTTTAGCTTTGTATTTTGATCCTTTTTTTATTTT-GGTT 1160
Query 1208 TGTTTTGGACCATAACATGACTTTTGAGCTTCG--T---CA-G--TCAATGTTAAACCTT 1259
||||||||||||| ||||||||||||||||||| | || | |||||||||||||||
Sbjct 1161 TGTTTTGGACCATTACATGACTTTTGAGCTTCGAGTTTACATGAGTCAATGTTAAACCTT 1220
Query 1260 GCACACAT 1267
||||||||
Sbjct 1221 GCACACAT 1228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5