BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04290.1
Length=4482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487210 jgi|Araly1|487210|fgenesh2_kg.6__344__AT5G04290.1 2089 0.0
> Ahg487210 jgi|Araly1|487210|fgenesh2_kg.6__344__AT5G04290.1
Length=4431
Score = 2089 bits (1131), Expect = 0.0
Identities = 1363/1470 (93%), Gaps = 35/1470 (2%)
Strand=Plus/Plus
Query 3044 AAAAGGATGATGGAGGATCGTTGTGGGGAAAAAAGGATGATGGAGGATCTTCTTGGGGCA 3103
||||||||||||||||||| | |||||| || ||||| ||||||||||||||||||||||
Sbjct 2966 AAAAGGATGATGGAGGATCATCGTGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3025
Query 3104 AAGAGGATGATGGAGGATCGTT-GTGGGGTAAGAAGGATGATGGAGAATCGTCGTGGGGT 3162
|| |||| ||||||||||| || ||||| || ||||| ||||| | ||||| |||||||
Sbjct 3026 AAAAGGACGATGGAGGATC-TTCTTGGGGCAAAAAGGACGATGGGGGATCGTTGTGGGGT 3084
Query 3163 AAGAAGGATGATGGAGAATCGTCGTGGGGTAAGAAGGATGATGGAGGATCGTCGTGGGGT 3222
|| ||||||||||||| ||| || ||||| || ||||||||||||||||| |||||||||
Sbjct 3085 AAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAGGATCATCGTGGGGT 3144
Query 3223 AAGAAGGATGAGGGAGGGTACTCAGAACAAACATTTGATAGGGGAGGACGTGGGTTTGGT 3282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3145 AAGAAGGATGAGGGAGGGTACTCAGAACAAACATTTGATAGGGGAGGACGTGGGTTTGGT 3204
Query 3283 GGGAGAAGAGGAGGAGGTCGTCGAGGTGGCAGGGATCAGTTTGGGAGGGGAAGCTCCTTC 3342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3205 GGGAGAAGAGGAGGAGGTCGTCGAGGTGGCAGGGATCAGTTTGGGAGGGGAAGCTCCTTC 3264
Query 3343 GGTAATTCTGAGGATCCGGCTCCATGGAGTAAACCAAGTGGCGGATCTAGCTGGGGCAAG 3402
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3265 AGTAATTCTGAGGATCCGGCTCCATGGAATAAACCAAGTGGCGGATCTAGCTGGGGCAAG 3324
Query 3403 CAAGATGGCGATGGGGGCGGTTCAAGCTGGGGTAAAGAGAATGATGCTGGTGGTGGATCT 3462
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3325 CAAGATAGTGATGGGGGCGGTTCAAGCTGGGGTAAAGAGAATGATACTGGTGGTGGATCT 3384
Query 3463 AGCTGGGGAAAGCAAGACAATGGTG-T--TGGTTCAAGCTGGGGTAAACAGAACGATGGT 3519
|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
Sbjct 3385 GGCTGGGGAAAGCAAGACAGTGGTGGTGGTGGTTCAAGCTGGGGTAAACAGAACGATGCT 3444
Query 3520 AGTGGTGGTGGATCTAGCTGGGGCAAGCAGAATGATGCTGGTGGGGGATCTAGCTGGGGC 3579
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 3445 AGTGGTGGTGGATCGAGCTGGGGCAAGCAGAATAATGCTGGTGGCGGATCTAGCTGGGGC 3504
Query 3580 AAGCAAGACAGTGGTGGGGATGGTTCGAGCTGGGGTAAGCAGGATGGTGGTGGT-GATAG 3638
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 3505 AAGCAAGACACTGGTGGGGATGGTTCGAGCTGGGGTAAACAGGATGGTGGTGGTAG-TAG 3563
Query 3639 TGGTTCTGCTTGGGGTAAGCAGAACAATACTAGTGGTGGATCGAGCTGGGGAAAGCAGAG 3698
|||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 3564 TGGTTCTGGTTGGGGTAAGCAGAACAATGCTAGTGGTGGATCAAGCTGGGGCAAGCAGAG 3623
Query 3699 TGATGCTGGTGGGGGATCTAGCTGGGGCAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTG 3758
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3624 TGATGCTGGTGGGGGATCTAGCTGGGACAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTG 3683
Query 3759 GGGTAAACAAGATGGTGGTGGAGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGAGACTAG 3818
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 3684 GGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGATACTAG 3743
Query 3819 CAATGGATC---GAGCTGGGGGAAGCAGAATGATTCTGGTGGAGGATCAAGCTGGGGAAA 3875
|||||| ||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 3744 TGGTGGATCATCGAGCTGGGGGAAGCAGAATGACTCTGGTGGAGGATCTAGTTGGGGAAA 3803
Query 3876 GCAAGAtggtggtgggggtggttcaagctggggtaaacag-a-a-cgatggtggtggtgg 3932
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct 3804 GCAAGATGGTGGTGGGGGTGGTTCAAGCTGGGGTAAACCGGATAACGATGGTGGTGGTGG 3863
Query 3933 -g--tcgagctggggCAAGCAGGGTGATGGTGGTTCTAAACCTTGGAATGAACATAGTGG 3989
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3864 TGGATCGAGTTGGGGCAAGCAGGGTGATGGTGGTTCTAAACCTTGGAATGAACAGAGTGG 3923
Query 3990 TGGTGGTCGTGGGTTTGGTGAAAGAAGGGGAGGAGGGGGATTCCGTGGAGGT-------- 4041
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||
Sbjct 3924 TGGTGGTCGTGGGTTTGGTGGAAGTAGGGGAGGAGGGGGATTCCGAGGAGGTTTCCGTGG 3983
Query 4042 AG--A-AA-CCAATCAGGCAGAGGAGGAAGGTCGTTTGATGGTGGTCGATCATCTAGCTG 4097
|| | || ||||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 3984 AGGCAGAAACCAATCAGGTAGAGGAGGAAGGTCGTTTGATGGTGATCAATCATCTAGCTG 4043
Query 4098 GAAAACAGACAATCAAGAAAACACTTGGAAGAGCGACCAAAGTGGTGGATCAGACTGGAA 4157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4044 GAAAACAGACAATCAAGAAAACACTTGGAAGAGCGACCAAAGTGGTGGATCAGACTGGAA 4103
Query 4158 AAAAGGTTGGGGAGAGGATTCAAACAATAGCAAACCATCCGGTTCGTC-TGCTGGTGGTT 4216
|||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 4104 AAAAGGGTGGGGAGAGGATTCAAACAATAGCAAACCATCTGGTTCGTCCT-CTGGTGGTG 4162
Query 4217 GTGCTGGAAACTGGCCTAGCTGGGATACTAACTCAAAGAA-AGAAACCAATGACAAACCG 4275
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 4163 GTGCTGGAAACTGGCCTAGCTGGGATACTAACTCAAA-AAGAGAAACCAATGATAAACCG 4221
Query 4276 GGAGACGATAGCAAATCAGCTTG--GGGA-ACCAGTAACGATCAGGTGAATACCGATAAC 4332
|||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||| |
Sbjct 4222 GGAGACGAAAGCAAATCAGCTTGTTGGGGGACCAGTAACGATCAGGCGAATACCGATATC 4281
Query 4333 AACAATGACAGTTGGAACAAAAAGCCAAACAATGATGTTGGAACAAGTGGAGAAGCTGAT 4392
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 4282 AACAATGACACTTGGAACAAAAAGCCAAACAATGATGTCGGAACGAGTGGAGAAGCTGAT 4341
Query 4393 AATGCATGGGGCGGCAAAACAAATGCAGTAGCGCCTTCACCAAGTGGCTCGGCAGCGTGG 4452
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||
Sbjct 4342 AATGCATGGGGCGGCAACACAAATGCAGAAGTGCCTTCACCAAGTGGCTCGGCAGCGTGG 4401
Query 4453 GGAACCGGTGACaaaaaaaCCGGATGGTAA 4482
|||||||||||||||||||| |||||||||
Sbjct 4402 GGAACCGGTGACAAAAAAACTGGATGGTAA 4431
Score = 1984 bits (1074), Expect = 0.0
Identities = 1185/1239 (96%), Gaps = 6/1239 (0%)
Strand=Plus/Plus
Query 1 ATGGATCGCAAGGGAAAGGGTAAACAGGTCGCC-GGTAGTGATTCGTATTCCGGCGGACA 59
||||||||||||||||||||||||||||||||| || | ||| |||| |||||||||| |
Sbjct 1 ATGGATCGCAAGGGAAAGGGTAAACAGGTCGCCGGGGA-TGAATCGTCTTCCGGCGGAAA 59
Query 60 GAAAAGGAAAAACTCCGTCGAATTCAGAGATGAAGGTTTGAGGATTAAGAAGCGCAAAAA 119
||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 60 GAAAAGGAAAAACACTGTCGAATTCAGAGATGAAGGTTTGAGGATTAAGAAGCGGAATAA 119
Query 120 CCCTGAGGTTCTTCAGTTCTTCGAAGAATCAGCTGAAGTTGGCTACTACGGAGGCAGCTC 179
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 CCCTGGGGTTCTTCAGTTCTTCGAAGAATCTGCTGAAGTTGGCTACTACGGAGGCAGCTC 179
Query 180 CGACGAAGATGATGACGGATTAGGTTTCCTTAACGATATGGAAGACGAGCCTGAGGTGGA 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 CGACGAAGATGATGACGGATTAGGTTTCCTTAACGATATGGAAGACGAACCTGAGGTGGA 239
Query 240 AGAGAGTAGTAAGGCTGGCAAGGGAGAAAAGGGCAAATCATCCTTTGTTTTTCCCAAGGA 299
||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 240 AGAGAGTGGTAAGCCTGGCAAGGGAGAAAAGGGCAAAGCATCCTTTGTTTTTCCTAAGGA 299
Query 300 AGAAGAT-TTAAACGAGGAGGAATTTGATAGAATAATGGAAGAAAGATACAAGCCAGGTT 358
||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 300 AGAAGATATT-AACGAGGAAGAATTTGATAGAATGATGGAAGAAAGATACAAGCCAGGTT 358
Query 359 CTGGTTTTCTTAGATATGCTGATGATGATATCAAAGATGCCATTGAGATGGATGCTCTTG 418
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 359 CTGGTTTTCTTCGATATGCTGATGATGATGTGAAAGATGCCATTGAGATGGATGCTCTTG 418
Query 419 CTCCAACCTCCAAGGATCCTCCTATATGGAAAGTCAAGTGTGCGATTGGACGGGAGAGGC 478
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTCCATCTTCCAAGGATCCTCCTATATGGAAAGTCAAGTGTGCGATTGGACGGGAGAGGC 478
Query 479 GATCCGTTTTCTGTCTCATGCACAAATTTGTTGAGCTGAGAAAGATAGGCACCAAATTGG 538
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 GATCCGCTTTCTGTCTCATGCACAAATTTGTTGAGCTGAAAAAGATAGGCACCAAATTGC 538
Query 539 AGATCATATCTGTTTTTTCTGTGGACCATGTCAAAGGTTTCATTTTCATAGAAGCGGACA 598
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 539 AGATCATATCTGTTTTTTCTTTGGACCATGTCAAGGGTTTCATTTTCATAGAAGCGGACA 598
Query 599 AGGAACATGATGTTCTTGAGGCATGCAAGAGTTTAGTTGGTATATACGCTACTCGGATGG 658
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 599 AGGAACATGATGTTCTTGAGGCCTGCAAGAGTTTAACTGGTATATACGCTACTCGGATGG 658
Query 659 TGTTACTTCCTAAAGCCGAAACTCCAAATCTGCTAACTGTCCaaaaaaaaactaaaaaaG 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 659 TGTTACTTCCTAAAGCCGAAACTCCAAATCTGCTAACTGTCCAAAGAAAAACTAAAAAAG 718
Query 719 TTTCTGAGGGAACATGGGCTCGTGTTAAGAATGGTAAATACAAAGGAGATCTTGCTCAGA 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 TTTCTGAGGGAACATGGGCTCGTGTTAAGAATGGCAAATACAAAGGAGATCTTGCTCAGA 778
Query 779 TTGTGGCTGTGAGTGACACTCGGAATAAAGCACTAATAAAGCTAATTCCGAGGATTGATA 838
|||||||||||||||||||| || ||||||| |||||||| ||||||||||||| ||||
Sbjct 779 TTGTGGCTGTGAGTGACACTAAGAGTAAAGCATTAATAAAGTTAATTCCGAGGATCGATA 838
Query 839 TTCAGGCCTTGACCCAGAAATATGGTGGGGGAGTTACTGTCCAAAAAGGCCAGACTCCAG 898
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 TTCAGGCCTTGACCCAAAAATATGGTGGGGGAGTTACTGTCCAAAAAGGCCAGTCTCCAG 898
Query 899 CTCCAAGATTGATCAGTTCAAGCGAGCTCGAGGAGTTCAGACCTCTCATTCAAGTGAGGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTCCAAGATTGATCAGTTCAAGCGAGCTCGAGGAGTTCAGACCTCTCATTCAAGTGAGGC 958
Query 959 GAGATCGTGATACTGGAATAACTTTTGAACATCTTGATAGTC-TGATGCTGAAAGATGGG 1017
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 959 GAGATCGTGATACTGGAATAACTTTTGAGCATCTTGATAG-CATGATGCTGAAAGATGGG 1017
Query 1018 TATCTCTATAAGAAAGTATCCTTAGATTCAATATCTTCCTGGGGGGTTATACCAACGAAG 1077
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1018 TATCTCTATAAGAAAGTTTCCTTAGATTCAATATCTTCCTGGGGGGTTATACCATCGAAG 1077
Query 1078 GATGAGTTACTAAAATTTACGCCTGTAGACCGAAAAGAAACTGGTGATGTAGAGTGGATC 1137
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGGAGATACTAAAATTTACGCCTGTAGACCGAAAAGAAACTGGTGATGTAGAGTGGATC 1137
Query 1138 TCAGAAATTTATGGTGAAGAAAGGAAGAAAAAGATTCTTCCAACCTGCagagagggtggg 1197
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1138 TCAGAAATTTATGGTGAAGAAAGGAAGAAAAAGATTCTTCCAACCGGCAGAGGGGGTGGG 1197
Query 1198 aaaggagaaggatcagggggtggaaaaggagaaggatca 1236
||||||||||||||||||||||||||||||||||| |||
Sbjct 1198 AAAGGAGAAGGATCAGGGGGTGGAAAAGGAGAAGGTTCA 1236
Score = 1266 bits (685), Expect = 0.0
Identities = 938/1050 (89%), Gaps = 58/1050 (6%)
Strand=Plus/Plus
Query 2136 GCATGAGAGTCTCAATATTGAACGTAACATGGTTCAACTGTGCC----G---TGAGAAGA 2188
||| |||||||||||| ||||| ||| ||||||| |||||| || | ||||||||
Sbjct 2132 GCAGGAGAGTCTCAATGTTGAATGTATCATGGTTTAACTGTACCGTGAGAACTGAGAAGA 2191
Query 2189 ACCCATGGGGCGGCAGTAAGCCTACGTCTGACGTCTCGCCAACAGTTGCAGATGATAATA 2248
|||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2192 ACCCAT--GG-GGCAGTAAGCCTACGTCTGACGTCTGGCCGACAGTTGCAGATGATAATA 2248
Query 2249 CTTCAGCATGGGCCAATGCAGCAGCTGAGAACAAACCTGCCTCGGCTAGTGATCAACCTG 2308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2249 CTTCAACATGGGCCAATGCAGCAGCTGAGAACAAACCTGCCTCGGCTAGTGATCAACCTG 2308
Query 2309 GTGGTTGGAATCCCTGGGGTAAAACACCTGCTTCTGAAGCTGGCACTGTTAGTGGATGGG 2368
|||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2309 GTGGTTGGGATTCCTGGGTTAAAACACCTGCTTCTGAAGCTGGCACTGTTAGTGGGTGGG 2368
Query 2369 GAGATACAAGTGCTTCAAATGTTGAAGCTTCTTCGTGGGAAAAACAAGGAGCTTCTACTT 2428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2369 GAGATACAAGTGCTTCAAATGTTGAAGCTTCTTCGTGGGGAAAACAAGGAGCTTCTACTT 2428
Query 2429 CCAATGTTGCAGATTTAGGTTCCTGGGGTACGCATGGTGGAAGCTCTGGTGGTAATAAGC 2488
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2429 CCAATGTTGCAGATTCAGGTTCCTGGGGTATGCATGGTGGAAGCTCTGGTGGTAATAAGC 2488
Query 2489 AAGATGAGGACTCGGTATGGGGTAAACTATGTGAAGCTTCTGAATCAAGTCAGAAGAAAG 2548
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2489 AAGATGAGGACTCAGTATGGGGTAAACTATGTGAAGCTTCTGAATCGAGTCAGAAGAAAG 2548
Query 2549 AAGAATCGTCTTGGGGTAAGAAAGGGGGATC--A----G-------A--------TGGAG 2587
||||||||||||||||||||||||||||||| | | | |||||
Sbjct 2549 AAGAATCGTCTTGGGGTAAGAAAGGGGGATCTGAATCTGGTTTGGGAACGGGAGATGGAG 2608
Query 2588 AATCTAGTTGGGGAAACAAAGATGGAAATTCCAGCGCAAGTAAGAAAGATGGAGTTTCCT 2647
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2609 AATCTAGTTGGGCCAACAAAGATGGAAATTCCAGCGCAAGTAACAAAGATGGAGTTTCCT 2668
Query 2648 GGGGACAACAGGATAAAGGCTCTGACGAGAGCAAGGGAGGATCTGCATGGAGTAATCAAT 2707
||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 2669 GGGGACAACAGGAGAAAGGCTCTGATGGGAGCAAGGGAGGATCTGCATGGGGTAATCAAG 2728
Query 2708 GTGGAGATTTTGGTTCAGG-GAAGAAAAAAGATGGTTCTTCTGGTTGGAACAAGTCAGCA 2766
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2729 GTGGAGGTTTTGGTTCAGGAGA-GAAAAAAGATGGTTCTTCTGGTTGGAACAAGTCAGCA 2787
Query 2767 GAAGATTCCAATGCCAATAGTAAGGGAGTTCCTGACTGGGGCCAA-CCAAATGATGGCTC 2825
|||||||||||||||||||||||||| ||||||| |||||| || ||| ||| ||||||
Sbjct 2788 GAAGATTCCAATGCCAATAGTAAGGGTGTTCCTGGCTGGGGT-AAGCCAGATGGTGGCTC 2846
Query 2826 TTCATGGGGTAAAAAGGGT--G-A---CGGAGCGGCATCGTGGGGTAAAAAGGATGACGG 2879
||||||||||||| ||| | | | ||||| |||||||||||||||||||||||||||
Sbjct 2847 TTCATGGGGTAAACAGGATAAGCAAGACGGAGTGGCATCGTGGGGTAAAAAGGATGACGG 2906
Query 2880 AGGCTCGTGGGGTAAAAAGGATGACGGTAATAAGGATGATGGAGGATCATCGTGGGGTAA 2939
||||||||||||||| ||||||||||| | | | || |||||||||||||
Sbjct 2907 AGGCTCGTGGGGTAATAAGGATGACGG-A----G--T-AT-------CATCGTGGGGTAA 2951
Query 2940 GAAAGATGACGGTCAAAAGGATGACGGAGGATCGTCTTGGGAGAAA-AAGTTTGATGGAG 2998
|||||||||||||||||||||||| |||||||| || |||| | || ||| |||||||
Sbjct 2952 GAAAGATGACGGTCAAAAGGATGATGGAGGATCATCGTGGG-GTAAGAAGGACGATGGAG 3010
Query 2999 GATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAG 3058
|||| || ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 3011 GATCTTCTTGGGGCAAAAAGGACGATGGAGGATCTTCTTGGGGCAAAAAGGACGATGGGG 3070
Query 3059 GATCGTTGTGGGGAAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAGAGGATGATGGAG 3118
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3071 GATCGTTGTGGGGTAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAG 3130
Query 3119 GATCGTTGTGGGGTAAGAAGGATGATGGAG 3148
|||| | |||||||||||||||||| ||||
Sbjct 3131 GATCATCGTGGGGTAAGAAGGATGAGGGAG 3160
Score = 1262 bits (683), Expect = 0.0
Identities = 835/903 (92%), Gaps = 31/903 (3%)
Strand=Plus/Plus
Query 1236 agggggtggaaaaggagaagggtcaaggggtggaaaaggagaaggtTCATCAG-ATTTCA 1294
||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||| |
Sbjct 1188 AGGGGGTGGGAAAGGAGAAGGATCAGGGGGTGGAAAAGGAGAAGGTTCATCAGAATTT-A 1246
Query 1295 AGTCAGAAAGTAGCTATGAGTTATATAATCTAGTTTGTTTCAGTCGAAAAGACTTTGGTC 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1247 AGTCAGAAAGTAGCTATGAGTTATATAATCTAGTTTGTTTCAGTCGAAAAGACTTCGGTC 1306
Query 1355 TGATTGTGGGTGTGGATGACAAAGGTGACGGTTACAAGGTTCTGAAAGAAGGTATAGATG 1414
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1307 TGATTGTGGGCGTGGATGACAAAGGTGACGGTTACAAGGTTCTGAAAGAAGGTTTAGATG 1366
Query 1415 GACCCGTTGTAGTCACTGTTGGaaaaaaaGAAATGCAGAATGGACCGTTTGATTCAAAAT 1474
|||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1367 GACCTGTTGTAGTCACTGTTGGAAAAAAGGAAATGCATAATGGACCTTTTGATTCAAAAT 1426
Query 1475 TTACTGCCTTGGATCTGAACAAGAAACAAATATCAGTAAATGATGTTGTGAAGATTTCCA 1534
||||||||||||||||| || ||| || | | |||| | | | | ||
Sbjct 1427 TTACTGCCTTGGATCTG---AA-TAAC-AA-A-C---AAAT-A-----T-CA-A-TT--- 1464
Query 1535 AAGGCCCATCCGAGGGTAAACAAGGAGTTGTAAGGCAAGTATACAGAGGGATCATATTCC 1594
|| | || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 AATG---AT--GTTGGTAAACAAGGAGTTGTAAGGCAAGTATACAGAGGGATCATATTTA 1519
Query 1595 TTTATGATGAGAGCGAGGAAGAAAATGGTGGATATTTCTGCTGCAAATCACAATCATGTG 1654
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1520 TTTATGATGAGAGCGAGGAAGAAAATGGTGGATATTTCTGCTGCAAATCACACTCATGTG 1579
Query 1655 AGAAAGTTAAACTCTTTACTGAAGAGTCCAATGAGAAGACTGGTGGATTTGATGGTACAG 1714
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||
Sbjct 1580 AGAAAGTTAAACTCTTTACTGAAGACTCCAATGAGAAGACTGGTGGATTTGATGCTTCAG 1639
Query 1715 CTTTTGAAGATTTTGTATCCTCCCCAAAATCGCCGCTATCTCCTGAAAAAGAGTGGCAGC 1774
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 CTTTTGGAGATTCTGTATCCTCCCCAAAATCGCCGCTATCTCCTGAAAAAGAGTGGCAGC 1699
Query 1775 CCAGGGAAAGATACAATAGCTCCAACCAAGGAGACATAGGTAGCACGTATTCTATAGGCC 1834
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1700 CCAGGGAAAGATACAATAATTCCAACCAAGGAGACAGAGGTAGCACGTATTCTATAGGCC 1759
Query 1835 AAAAGCTGAGGATACGGGTGGGTCCATTGAAGGGGTATCTCTGCCGTGTAATAGCTTTAC 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 AAAAGCTGAGGATACGGGTGGGTCCATTGAAGGGGTATCTCTGCCGTGTAATAGCTTTAC 1819
Query 1895 GTTATTCTGATGTTACAGTCAAGCTTGATTCCCAGCATAAAATTTTCACAGTTAAAAGTG 1954
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1820 GCTATTCTGATGTTACAGTCAAGCTTGATTCCCAGCATAAAGTTTTCACAGTTAAAAGTG 1879
Query 1955 AGCATCTTGCTGAGGTTCGCGACAGAAACACTGTGCTAAGTACAAGTGGGGATGCGGGTA 2014
||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1880 AGCATCTAGTTGAGGTTCGCGACAGAAACACTGCGCTAAGTACAAGTGGGGATGCGGGCA 1939
Query 2015 CTGG-TTCCTTTCAACCTTTTGGCATGCTTGGAACAGAAAGCAGCACTGGAGACTGGGCG 2073
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1940 -TGGGTTCCTTTCAACCTTTTGACATGCTTGGAACAGAAAGCAGCACTGGAGACTGGGCG 1998
Query 2074 ATAGGAGCAGGGACGTCAAGTGAGGGTGGTAACTGGAATATAGGAGGCCCTTCTACTGAC 2133
| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AAAGGAGCAGGCACGTCAGGTGAGGGTGGTAACTGGAATATAGGAGGCCCTTCTACTGAT 2058
Query 2134 TCG 2136
|||
Sbjct 2059 TCG 2061
Score = 344 bits (186), Expect = 3e-93
Identities = 333/401 (83%), Gaps = 22/401 (5%)
Strand=Plus/Plus
Query 3380 GTGGCGGATCTAGCTGGGGCAAGCAAG-ATGGCGATGGGGGCGGTTCAAGCTGGGGTAAA 3438
|||| ||||| ||||||||||||| || || | ||| ||||| || |||||||| ||
Sbjct 3449 GTGGTGGATCGAGCTGGGGCAAGC-AGAATAATGCTGGTGGCGGATCTAGCTGGGG-CAA 3506
Query 3439 GAGAATGATGCTGGT--GG-TGGATCTAGCTGGGG--AA-AGCAAGACAATGGT-GT--T 3489
| || || ||||| || ||| || |||||||| || || | | |||| || |
Sbjct 3507 G-CAA-GACACTGGTGGGGATGGTTCGAGCTGGGGTAAACAGGATGGTGGTGGTAGTAGT 3564
Query 3490 GGTTCAAGCTGGGGTAAACAGAACGATGGTAGTGGTGGTGGATCTAGCTGGGGCAAGCAG 3549
||||| | |||||||| |||||| ||| || |||||||||| |||||||||||||||
Sbjct 3565 GGTTCTGGTTGGGGTAAGCAGAACAATGCTA---GTGGTGGATCAAGCTGGGGCAAGCAG 3621
Query 3550 AATGATGCTGGTGGGGGATCTAGCTGGGGCAAGCAAGACAGTGGTGGGGATGGTTCGAGC 3609
| |||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||
Sbjct 3622 AGTGATGCTGGTGGGGGATCTAGCTGGGACAAGCAAGACGGTGGTGGGGGTGGTTCAAGC 3681
Query 3610 TGGGGTAAGCAGGATGGTGGTGGTGATAGTGGTTCTGCTTGGGGTAAGCAGAACAATACT 3669
||||| || || ||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 3682 TGGGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGATACT 3741
Query 3670 AGTGGTGG---ATCGAGCTGGGGAAAGCAGAGTGA-TGCTGGTGGGGGATCTAGCTGGGG 3725
|||||||| |||||||||||| ||||||| ||| | ||||||| |||||||| |||||
Sbjct 3742 AGTGGTGGATCATCGAGCTGGGGGAAGCAGAATGACT-CTGGTGGAGGATCTAGTTGGGG 3800
Query 3726 CAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTGGGGTAAAC 3766
|||||||| |||||||||||||||||||||||||||||||
Sbjct 3801 AAAGCAAGATGGTGGTGGGGGTGGTTCAAGCTGGGGTAAAC 3841
Score = 233 bits (126), Expect = 7e-60
Identities = 175/198 (88%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 2984 AAAAGTTTGATGGAGGATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3043
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2966 AAAAGGATGATGGAGGATCATCGTGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3025
Query 3044 AAAAGGATGATGGAGGATCGTTGT-GGGGAAAAAAGGATGATGGAGGATC-TTCTTGGGG 3101
||||||| ||||||||||| || | |||| |||||||| ||||| ||||| || | ||||
Sbjct 3026 AAAAGGACGATGGAGGATC-TTCTTGGGGCAAAAAGGACGATGGGGGATCGTTGT-GGGG 3083
Query 3102 CAAAGAGGATGATGGAGGATCGTTGT-GGGGTAAGAAGGATGATGGAGAATCGTCGTGGG 3160
||| |||||||||||||||| || | |||| || ||||||||||||| ||| |||||||
Sbjct 3084 TAAAAAGGATGATGGAGGATC-TTCTTGGGGCAAAAAGGATGATGGAGGATCATCGTGGG 3142
Query 3161 GTAAGAAGGATGATGGAG 3178
||||||||||||| ||||
Sbjct 3143 GTAAGAAGGATGAGGGAG 3160
Score = 228 bits (123), Expect = 3e-58
Identities = 233/281 (83%), Gaps = 27/281 (10%)
Strand=Plus/Plus
Query 2830 TGGGGTAAAAAGGGTGACGGAGCGGCATCGTGGGGTAAAAAGGATGACGGAG--GC-TCG 2886
||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| | |||
Sbjct 2887 TGGGGTAAAAAGGATGACGGA--GGC-TCGTGGGGTAATAAGGATGACGGAGTATCATCG 2943
Query 2887 TGGGGTAA-AAAGGATGACGGT-AATAAGGATGATGGAGGATCATCGTGGGGTAAGAA-- 2942
|||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2944 TGGGGTAAGAAA-GATGACGGTCAA-AAGGATGATGGAGGATCATCGTGGGGTAAGAAGG 3001
Query 2943 A-GAT----GA----C---GGTC-AAAAGGATGACGGAGGATCGTCTTGGGAG-AAAAAG 2988
| ||| || | || | ||||||| || |||||||| ||||||| | ||||||
Sbjct 3002 ACGATGGAGGATCTTCTTGGGGCAAAAAGGACGATGGAGGATCTTCTTGGG-GCAAAAAG 3060
Query 2989 TTTGATGGAGGATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCAAAAAG 3048
||||| ||||| | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 3061 GACGATGGGGGATCGTTGTGGGGTAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAG 3120
Query 3049 GATGATGGAGGATCGTTGTGGGGAAAAAAGGATGATGGAGG 3089
|||||||||||||| | |||||| || |||||||| |||||
Sbjct 3121 GATGATGGAGGATCATCGTGGGGTAAGAAGGATGAGGGAGG 3161
Score = 174 bits (94), Expect = 4e-42
Identities = 324/428 (76%), Gaps = 44/428 (10%)
Strand=Plus/Plus
Query 3380 GTGGCGGATCTAGCTGGGGCAAGCAAGATGGC-GATGGGGGCGGTTCAAGCTGGGGTAAA 3438
|||||||||||||||||||||||||||| | | ||||| ||||| ||||||||||||
Sbjct 3485 GTGGCGGATCTAGCTGGGGCAAGCAAGACA-CTGGTGGGGATGGTTCGAGCTGGGGTAAA 3543
Query 3439 GAGAATGATGCTGGT-G--GTGGATCTAGCTGGGGAAAGCAAGA-CAATGGT-GT--TGG 3491
|| ||| || |||| | |||| ||| | ||||| ||||| || ||||| | || |||
Sbjct 3544 CAGGATGGTGGTGGTAGTAGTGGTTCTGGTTGGGGTAAGCA-GAACAATGCTAGTGGTGG 3602
Query 3492 TTCAAGCTGGGGTAAACAGAACGATGGTAGTGGTGGTGGATCTAGCTGGGGCAAGCA-GA 3550
||||||||||| || |||| |||| | |||| || | ||||||||||| |||||| ||
Sbjct 3603 ATCAAGCTGGGGCAAGCAGAGTGATGCTGGTGG-GG-G-ATCTAGCTGGGACAAGCAAGA 3659
Query 3551 ATGATGCTGGTGGG-GGATCTAGCTGGGGCAAGCAAGACAGTGGTGG-GG-A-TGGTTCG 3606
| || ||| ||| || || ||||||||||| ||||| ||||||| || | ||||||
Sbjct 3660 CGG-TGGTGG-GGGTGGTTCAAGCTGGGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCT 3717
Query 3607 AGC-TGGGGTAAGCAG---GATGGTGGTGGTG-AT-AGTGGTTCTGCTTGGGGTAAGCAG 3660
|| |||||||||||| ||| | |||||| || | | | ||| |||| ||||||
Sbjct 3718 -GCCTGGGGTAAGCAGAACGATACTAGTGGTGGATCA-TCGAGCTG---GGGG-AAGCAG 3771
Query 3661 AACAA-TACTAGTGGTGGATCGAGCTGGGGAAAGCA-GAGTGATGCTGGTGGG-GGATCT 3717
|| | | || |||| ||||| || ||||||||||| || || || ||| ||| || ||
Sbjct 3772 AATGACT-CTGGTGGAGGATCTAGTTGGGGAAAGCAAGA-TGGTGGTGG-GGGTGGTTCA 3828
Query 3718 AGCTGGGGCAAGC---A-A--GACGGTGGTGGGGGTGGTTCAAGCTGGGGTAAACAAGAT 3771
|||||||| || | | | || |||||||| ||||| || || ||||| || || | |
Sbjct 3829 AGCTGGGGTAAACCGGATAACGATGGTGGTGGTGGTGGATCGAGTTGGGGCAAGCAGGGT 3888
Query 3772 GGTGGTGG 3779
| ||||||
Sbjct 3889 GATGGTGG 3896
Score = 65.8 bits (35), Expect = 3e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 2911 AAGGATGATGGAGGATCATCGTGGGGTAAGAAAGATGA 2948
|||||||||||||||||||||||||||||||| |||||
Sbjct 3118 AAGGATGATGGAGGATCATCGTGGGGTAAGAAGGATGA 3155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169546487715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5