BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04290.1 Length=4482 Score E Sequences producing significant alignments: (Bits) Value Ahg487210 jgi|Araly1|487210|fgenesh2_kg.6__344__AT5G04290.1 2089 0.0 > Ahg487210 jgi|Araly1|487210|fgenesh2_kg.6__344__AT5G04290.1 Length=4431 Score = 2089 bits (1131), Expect = 0.0 Identities = 1363/1470 (93%), Gaps = 35/1470 (2%) Strand=Plus/Plus Query 3044 AAAAGGATGATGGAGGATCGTTGTGGGGAAAAAAGGATGATGGAGGATCTTCTTGGGGCA 3103 ||||||||||||||||||| | |||||| || ||||| |||||||||||||||||||||| Sbjct 2966 AAAAGGATGATGGAGGATCATCGTGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3025 Query 3104 AAGAGGATGATGGAGGATCGTT-GTGGGGTAAGAAGGATGATGGAGAATCGTCGTGGGGT 3162 || |||| ||||||||||| || ||||| || ||||| ||||| | ||||| ||||||| Sbjct 3026 AAAAGGACGATGGAGGATC-TTCTTGGGGCAAAAAGGACGATGGGGGATCGTTGTGGGGT 3084 Query 3163 AAGAAGGATGATGGAGAATCGTCGTGGGGTAAGAAGGATGATGGAGGATCGTCGTGGGGT 3222 || ||||||||||||| ||| || ||||| || ||||||||||||||||| ||||||||| Sbjct 3085 AAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAGGATCATCGTGGGGT 3144 Query 3223 AAGAAGGATGAGGGAGGGTACTCAGAACAAACATTTGATAGGGGAGGACGTGGGTTTGGT 3282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3145 AAGAAGGATGAGGGAGGGTACTCAGAACAAACATTTGATAGGGGAGGACGTGGGTTTGGT 3204 Query 3283 GGGAGAAGAGGAGGAGGTCGTCGAGGTGGCAGGGATCAGTTTGGGAGGGGAAGCTCCTTC 3342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3205 GGGAGAAGAGGAGGAGGTCGTCGAGGTGGCAGGGATCAGTTTGGGAGGGGAAGCTCCTTC 3264 Query 3343 GGTAATTCTGAGGATCCGGCTCCATGGAGTAAACCAAGTGGCGGATCTAGCTGGGGCAAG 3402 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3265 AGTAATTCTGAGGATCCGGCTCCATGGAATAAACCAAGTGGCGGATCTAGCTGGGGCAAG 3324 Query 3403 CAAGATGGCGATGGGGGCGGTTCAAGCTGGGGTAAAGAGAATGATGCTGGTGGTGGATCT 3462 |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3325 CAAGATAGTGATGGGGGCGGTTCAAGCTGGGGTAAAGAGAATGATACTGGTGGTGGATCT 3384 Query 3463 AGCTGGGGAAAGCAAGACAATGGTG-T--TGGTTCAAGCTGGGGTAAACAGAACGATGGT 3519 |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| | Sbjct 3385 GGCTGGGGAAAGCAAGACAGTGGTGGTGGTGGTTCAAGCTGGGGTAAACAGAACGATGCT 3444 Query 3520 AGTGGTGGTGGATCTAGCTGGGGCAAGCAGAATGATGCTGGTGGGGGATCTAGCTGGGGC 3579 |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 3445 AGTGGTGGTGGATCGAGCTGGGGCAAGCAGAATAATGCTGGTGGCGGATCTAGCTGGGGC 3504 Query 3580 AAGCAAGACAGTGGTGGGGATGGTTCGAGCTGGGGTAAGCAGGATGGTGGTGGT-GATAG 3638 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | ||| Sbjct 3505 AAGCAAGACACTGGTGGGGATGGTTCGAGCTGGGGTAAACAGGATGGTGGTGGTAG-TAG 3563 Query 3639 TGGTTCTGCTTGGGGTAAGCAGAACAATACTAGTGGTGGATCGAGCTGGGGAAAGCAGAG 3698 |||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct 3564 TGGTTCTGGTTGGGGTAAGCAGAACAATGCTAGTGGTGGATCAAGCTGGGGCAAGCAGAG 3623 Query 3699 TGATGCTGGTGGGGGATCTAGCTGGGGCAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTG 3758 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3624 TGATGCTGGTGGGGGATCTAGCTGGGACAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTG 3683 Query 3759 GGGTAAACAAGATGGTGGTGGAGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGAGACTAG 3818 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 3684 GGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGATACTAG 3743 Query 3819 CAATGGATC---GAGCTGGGGGAAGCAGAATGATTCTGGTGGAGGATCAAGCTGGGGAAA 3875 |||||| ||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 3744 TGGTGGATCATCGAGCTGGGGGAAGCAGAATGACTCTGGTGGAGGATCTAGTTGGGGAAA 3803 Query 3876 GCAAGAtggtggtgggggtggttcaagctggggtaaacag-a-a-cgatggtggtggtgg 3932 |||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||| Sbjct 3804 GCAAGATGGTGGTGGGGGTGGTTCAAGCTGGGGTAAACCGGATAACGATGGTGGTGGTGG 3863 Query 3933 -g--tcgagctggggCAAGCAGGGTGATGGTGGTTCTAAACCTTGGAATGAACATAGTGG 3989 | ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3864 TGGATCGAGTTGGGGCAAGCAGGGTGATGGTGGTTCTAAACCTTGGAATGAACAGAGTGG 3923 Query 3990 TGGTGGTCGTGGGTTTGGTGAAAGAAGGGGAGGAGGGGGATTCCGTGGAGGT-------- 4041 |||||||||||||||||||| ||| |||||||||||||||||||| |||||| Sbjct 3924 TGGTGGTCGTGGGTTTGGTGGAAGTAGGGGAGGAGGGGGATTCCGAGGAGGTTTCCGTGG 3983 Query 4042 AG--A-AA-CCAATCAGGCAGAGGAGGAAGGTCGTTTGATGGTGGTCGATCATCTAGCTG 4097 || | || ||||||||| ||||||||||||||||||||||||| || |||||||||||| Sbjct 3984 AGGCAGAAACCAATCAGGTAGAGGAGGAAGGTCGTTTGATGGTGATCAATCATCTAGCTG 4043 Query 4098 GAAAACAGACAATCAAGAAAACACTTGGAAGAGCGACCAAAGTGGTGGATCAGACTGGAA 4157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4044 GAAAACAGACAATCAAGAAAACACTTGGAAGAGCGACCAAAGTGGTGGATCAGACTGGAA 4103 Query 4158 AAAAGGTTGGGGAGAGGATTCAAACAATAGCAAACCATCCGGTTCGTC-TGCTGGTGGTT 4216 |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||| Sbjct 4104 AAAAGGGTGGGGAGAGGATTCAAACAATAGCAAACCATCTGGTTCGTCCT-CTGGTGGTG 4162 Query 4217 GTGCTGGAAACTGGCCTAGCTGGGATACTAACTCAAAGAA-AGAAACCAATGACAAACCG 4275 ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| Sbjct 4163 GTGCTGGAAACTGGCCTAGCTGGGATACTAACTCAAA-AAGAGAAACCAATGATAAACCG 4221 Query 4276 GGAGACGATAGCAAATCAGCTTG--GGGA-ACCAGTAACGATCAGGTGAATACCGATAAC 4332 |||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||| | Sbjct 4222 GGAGACGAAAGCAAATCAGCTTGTTGGGGGACCAGTAACGATCAGGCGAATACCGATATC 4281 Query 4333 AACAATGACAGTTGGAACAAAAAGCCAAACAATGATGTTGGAACAAGTGGAGAAGCTGAT 4392 |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 4282 AACAATGACACTTGGAACAAAAAGCCAAACAATGATGTCGGAACGAGTGGAGAAGCTGAT 4341 Query 4393 AATGCATGGGGCGGCAAAACAAATGCAGTAGCGCCTTCACCAAGTGGCTCGGCAGCGTGG 4452 ||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||| Sbjct 4342 AATGCATGGGGCGGCAACACAAATGCAGAAGTGCCTTCACCAAGTGGCTCGGCAGCGTGG 4401 Query 4453 GGAACCGGTGACaaaaaaaCCGGATGGTAA 4482 |||||||||||||||||||| ||||||||| Sbjct 4402 GGAACCGGTGACAAAAAAACTGGATGGTAA 4431 Score = 1984 bits (1074), Expect = 0.0 Identities = 1185/1239 (96%), Gaps = 6/1239 (0%) Strand=Plus/Plus Query 1 ATGGATCGCAAGGGAAAGGGTAAACAGGTCGCC-GGTAGTGATTCGTATTCCGGCGGACA 59 ||||||||||||||||||||||||||||||||| || | ||| |||| |||||||||| | Sbjct 1 ATGGATCGCAAGGGAAAGGGTAAACAGGTCGCCGGGGA-TGAATCGTCTTCCGGCGGAAA 59 Query 60 GAAAAGGAAAAACTCCGTCGAATTCAGAGATGAAGGTTTGAGGATTAAGAAGCGCAAAAA 119 ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || || Sbjct 60 GAAAAGGAAAAACACTGTCGAATTCAGAGATGAAGGTTTGAGGATTAAGAAGCGGAATAA 119 Query 120 CCCTGAGGTTCTTCAGTTCTTCGAAGAATCAGCTGAAGTTGGCTACTACGGAGGCAGCTC 179 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 120 CCCTGGGGTTCTTCAGTTCTTCGAAGAATCTGCTGAAGTTGGCTACTACGGAGGCAGCTC 179 Query 180 CGACGAAGATGATGACGGATTAGGTTTCCTTAACGATATGGAAGACGAGCCTGAGGTGGA 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 180 CGACGAAGATGATGACGGATTAGGTTTCCTTAACGATATGGAAGACGAACCTGAGGTGGA 239 Query 240 AGAGAGTAGTAAGGCTGGCAAGGGAGAAAAGGGCAAATCATCCTTTGTTTTTCCCAAGGA 299 ||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 240 AGAGAGTGGTAAGCCTGGCAAGGGAGAAAAGGGCAAAGCATCCTTTGTTTTTCCTAAGGA 299 Query 300 AGAAGAT-TTAAACGAGGAGGAATTTGATAGAATAATGGAAGAAAGATACAAGCCAGGTT 358 ||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 300 AGAAGATATT-AACGAGGAAGAATTTGATAGAATGATGGAAGAAAGATACAAGCCAGGTT 358 Query 359 CTGGTTTTCTTAGATATGCTGATGATGATATCAAAGATGCCATTGAGATGGATGCTCTTG 418 ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 359 CTGGTTTTCTTCGATATGCTGATGATGATGTGAAAGATGCCATTGAGATGGATGCTCTTG 418 Query 419 CTCCAACCTCCAAGGATCCTCCTATATGGAAAGTCAAGTGTGCGATTGGACGGGAGAGGC 478 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CTCCATCTTCCAAGGATCCTCCTATATGGAAAGTCAAGTGTGCGATTGGACGGGAGAGGC 478 Query 479 GATCCGTTTTCTGTCTCATGCACAAATTTGTTGAGCTGAGAAAGATAGGCACCAAATTGG 538 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 479 GATCCGCTTTCTGTCTCATGCACAAATTTGTTGAGCTGAAAAAGATAGGCACCAAATTGC 538 Query 539 AGATCATATCTGTTTTTTCTGTGGACCATGTCAAAGGTTTCATTTTCATAGAAGCGGACA 598 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 539 AGATCATATCTGTTTTTTCTTTGGACCATGTCAAGGGTTTCATTTTCATAGAAGCGGACA 598 Query 599 AGGAACATGATGTTCTTGAGGCATGCAAGAGTTTAGTTGGTATATACGCTACTCGGATGG 658 |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 599 AGGAACATGATGTTCTTGAGGCCTGCAAGAGTTTAACTGGTATATACGCTACTCGGATGG 658 Query 659 TGTTACTTCCTAAAGCCGAAACTCCAAATCTGCTAACTGTCCaaaaaaaaactaaaaaaG 718 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 659 TGTTACTTCCTAAAGCCGAAACTCCAAATCTGCTAACTGTCCAAAGAAAAACTAAAAAAG 718 Query 719 TTTCTGAGGGAACATGGGCTCGTGTTAAGAATGGTAAATACAAAGGAGATCTTGCTCAGA 778 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 719 TTTCTGAGGGAACATGGGCTCGTGTTAAGAATGGCAAATACAAAGGAGATCTTGCTCAGA 778 Query 779 TTGTGGCTGTGAGTGACACTCGGAATAAAGCACTAATAAAGCTAATTCCGAGGATTGATA 838 |||||||||||||||||||| || ||||||| |||||||| ||||||||||||| |||| Sbjct 779 TTGTGGCTGTGAGTGACACTAAGAGTAAAGCATTAATAAAGTTAATTCCGAGGATCGATA 838 Query 839 TTCAGGCCTTGACCCAGAAATATGGTGGGGGAGTTACTGTCCAAAAAGGCCAGACTCCAG 898 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 839 TTCAGGCCTTGACCCAAAAATATGGTGGGGGAGTTACTGTCCAAAAAGGCCAGTCTCCAG 898 Query 899 CTCCAAGATTGATCAGTTCAAGCGAGCTCGAGGAGTTCAGACCTCTCATTCAAGTGAGGC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CTCCAAGATTGATCAGTTCAAGCGAGCTCGAGGAGTTCAGACCTCTCATTCAAGTGAGGC 958 Query 959 GAGATCGTGATACTGGAATAACTTTTGAACATCTTGATAGTC-TGATGCTGAAAGATGGG 1017 |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct 959 GAGATCGTGATACTGGAATAACTTTTGAGCATCTTGATAG-CATGATGCTGAAAGATGGG 1017 Query 1018 TATCTCTATAAGAAAGTATCCTTAGATTCAATATCTTCCTGGGGGGTTATACCAACGAAG 1077 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 1018 TATCTCTATAAGAAAGTTTCCTTAGATTCAATATCTTCCTGGGGGGTTATACCATCGAAG 1077 Query 1078 GATGAGTTACTAAAATTTACGCCTGTAGACCGAAAAGAAACTGGTGATGTAGAGTGGATC 1137 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1078 GAGGAGATACTAAAATTTACGCCTGTAGACCGAAAAGAAACTGGTGATGTAGAGTGGATC 1137 Query 1138 TCAGAAATTTATGGTGAAGAAAGGAAGAAAAAGATTCTTCCAACCTGCagagagggtggg 1197 ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1138 TCAGAAATTTATGGTGAAGAAAGGAAGAAAAAGATTCTTCCAACCGGCAGAGGGGGTGGG 1197 Query 1198 aaaggagaaggatcagggggtggaaaaggagaaggatca 1236 ||||||||||||||||||||||||||||||||||| ||| Sbjct 1198 AAAGGAGAAGGATCAGGGGGTGGAAAAGGAGAAGGTTCA 1236 Score = 1266 bits (685), Expect = 0.0 Identities = 938/1050 (89%), Gaps = 58/1050 (6%) Strand=Plus/Plus Query 2136 GCATGAGAGTCTCAATATTGAACGTAACATGGTTCAACTGTGCC----G---TGAGAAGA 2188 ||| |||||||||||| ||||| ||| ||||||| |||||| || | |||||||| Sbjct 2132 GCAGGAGAGTCTCAATGTTGAATGTATCATGGTTTAACTGTACCGTGAGAACTGAGAAGA 2191 Query 2189 ACCCATGGGGCGGCAGTAAGCCTACGTCTGACGTCTCGCCAACAGTTGCAGATGATAATA 2248 |||||| || ||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 2192 ACCCAT--GG-GGCAGTAAGCCTACGTCTGACGTCTGGCCGACAGTTGCAGATGATAATA 2248 Query 2249 CTTCAGCATGGGCCAATGCAGCAGCTGAGAACAAACCTGCCTCGGCTAGTGATCAACCTG 2308 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2249 CTTCAACATGGGCCAATGCAGCAGCTGAGAACAAACCTGCCTCGGCTAGTGATCAACCTG 2308 Query 2309 GTGGTTGGAATCCCTGGGGTAAAACACCTGCTTCTGAAGCTGGCACTGTTAGTGGATGGG 2368 |||||||| || |||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 2309 GTGGTTGGGATTCCTGGGTTAAAACACCTGCTTCTGAAGCTGGCACTGTTAGTGGGTGGG 2368 Query 2369 GAGATACAAGTGCTTCAAATGTTGAAGCTTCTTCGTGGGAAAAACAAGGAGCTTCTACTT 2428 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2369 GAGATACAAGTGCTTCAAATGTTGAAGCTTCTTCGTGGGGAAAACAAGGAGCTTCTACTT 2428 Query 2429 CCAATGTTGCAGATTTAGGTTCCTGGGGTACGCATGGTGGAAGCTCTGGTGGTAATAAGC 2488 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2429 CCAATGTTGCAGATTCAGGTTCCTGGGGTATGCATGGTGGAAGCTCTGGTGGTAATAAGC 2488 Query 2489 AAGATGAGGACTCGGTATGGGGTAAACTATGTGAAGCTTCTGAATCAAGTCAGAAGAAAG 2548 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2489 AAGATGAGGACTCAGTATGGGGTAAACTATGTGAAGCTTCTGAATCGAGTCAGAAGAAAG 2548 Query 2549 AAGAATCGTCTTGGGGTAAGAAAGGGGGATC--A----G-------A--------TGGAG 2587 ||||||||||||||||||||||||||||||| | | | ||||| Sbjct 2549 AAGAATCGTCTTGGGGTAAGAAAGGGGGATCTGAATCTGGTTTGGGAACGGGAGATGGAG 2608 Query 2588 AATCTAGTTGGGGAAACAAAGATGGAAATTCCAGCGCAAGTAAGAAAGATGGAGTTTCCT 2647 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2609 AATCTAGTTGGGCCAACAAAGATGGAAATTCCAGCGCAAGTAACAAAGATGGAGTTTCCT 2668 Query 2648 GGGGACAACAGGATAAAGGCTCTGACGAGAGCAAGGGAGGATCTGCATGGAGTAATCAAT 2707 ||||||||||||| ||||||||||| | |||||||||||||||||||||| |||||||| Sbjct 2669 GGGGACAACAGGAGAAAGGCTCTGATGGGAGCAAGGGAGGATCTGCATGGGGTAATCAAG 2728 Query 2708 GTGGAGATTTTGGTTCAGG-GAAGAAAAAAGATGGTTCTTCTGGTTGGAACAAGTCAGCA 2766 |||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 2729 GTGGAGGTTTTGGTTCAGGAGA-GAAAAAAGATGGTTCTTCTGGTTGGAACAAGTCAGCA 2787 Query 2767 GAAGATTCCAATGCCAATAGTAAGGGAGTTCCTGACTGGGGCCAA-CCAAATGATGGCTC 2825 |||||||||||||||||||||||||| ||||||| |||||| || ||| ||| |||||| Sbjct 2788 GAAGATTCCAATGCCAATAGTAAGGGTGTTCCTGGCTGGGGT-AAGCCAGATGGTGGCTC 2846 Query 2826 TTCATGGGGTAAAAAGGGT--G-A---CGGAGCGGCATCGTGGGGTAAAAAGGATGACGG 2879 ||||||||||||| ||| | | | ||||| ||||||||||||||||||||||||||| Sbjct 2847 TTCATGGGGTAAACAGGATAAGCAAGACGGAGTGGCATCGTGGGGTAAAAAGGATGACGG 2906 Query 2880 AGGCTCGTGGGGTAAAAAGGATGACGGTAATAAGGATGATGGAGGATCATCGTGGGGTAA 2939 ||||||||||||||| ||||||||||| | | | || ||||||||||||| Sbjct 2907 AGGCTCGTGGGGTAATAAGGATGACGG-A----G--T-AT-------CATCGTGGGGTAA 2951 Query 2940 GAAAGATGACGGTCAAAAGGATGACGGAGGATCGTCTTGGGAGAAA-AAGTTTGATGGAG 2998 |||||||||||||||||||||||| |||||||| || |||| | || ||| ||||||| Sbjct 2952 GAAAGATGACGGTCAAAAGGATGATGGAGGATCATCGTGGG-GTAAGAAGGACGATGGAG 3010 Query 2999 GATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAG 3058 |||| || ||||| || ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 3011 GATCTTCTTGGGGCAAAAAGGACGATGGAGGATCTTCTTGGGGCAAAAAGGACGATGGGG 3070 Query 3059 GATCGTTGTGGGGAAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAGAGGATGATGGAG 3118 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3071 GATCGTTGTGGGGTAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAGGATGATGGAG 3130 Query 3119 GATCGTTGTGGGGTAAGAAGGATGATGGAG 3148 |||| | |||||||||||||||||| |||| Sbjct 3131 GATCATCGTGGGGTAAGAAGGATGAGGGAG 3160 Score = 1262 bits (683), Expect = 0.0 Identities = 835/903 (92%), Gaps = 31/903 (3%) Strand=Plus/Plus Query 1236 agggggtggaaaaggagaagggtcaaggggtggaaaaggagaaggtTCATCAG-ATTTCA 1294 ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| |||| | Sbjct 1188 AGGGGGTGGGAAAGGAGAAGGATCAGGGGGTGGAAAAGGAGAAGGTTCATCAGAATTT-A 1246 Query 1295 AGTCAGAAAGTAGCTATGAGTTATATAATCTAGTTTGTTTCAGTCGAAAAGACTTTGGTC 1354 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1247 AGTCAGAAAGTAGCTATGAGTTATATAATCTAGTTTGTTTCAGTCGAAAAGACTTCGGTC 1306 Query 1355 TGATTGTGGGTGTGGATGACAAAGGTGACGGTTACAAGGTTCTGAAAGAAGGTATAGATG 1414 |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1307 TGATTGTGGGCGTGGATGACAAAGGTGACGGTTACAAGGTTCTGAAAGAAGGTTTAGATG 1366 Query 1415 GACCCGTTGTAGTCACTGTTGGaaaaaaaGAAATGCAGAATGGACCGTTTGATTCAAAAT 1474 |||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1367 GACCTGTTGTAGTCACTGTTGGAAAAAAGGAAATGCATAATGGACCTTTTGATTCAAAAT 1426 Query 1475 TTACTGCCTTGGATCTGAACAAGAAACAAATATCAGTAAATGATGTTGTGAAGATTTCCA 1534 ||||||||||||||||| || ||| || | | |||| | | | | || Sbjct 1427 TTACTGCCTTGGATCTG---AA-TAAC-AA-A-C---AAAT-A-----T-CA-A-TT--- 1464 Query 1535 AAGGCCCATCCGAGGGTAAACAAGGAGTTGTAAGGCAAGTATACAGAGGGATCATATTCC 1594 || | || | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1465 AATG---AT--GTTGGTAAACAAGGAGTTGTAAGGCAAGTATACAGAGGGATCATATTTA 1519 Query 1595 TTTATGATGAGAGCGAGGAAGAAAATGGTGGATATTTCTGCTGCAAATCACAATCATGTG 1654 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1520 TTTATGATGAGAGCGAGGAAGAAAATGGTGGATATTTCTGCTGCAAATCACACTCATGTG 1579 Query 1655 AGAAAGTTAAACTCTTTACTGAAGAGTCCAATGAGAAGACTGGTGGATTTGATGGTACAG 1714 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| Sbjct 1580 AGAAAGTTAAACTCTTTACTGAAGACTCCAATGAGAAGACTGGTGGATTTGATGCTTCAG 1639 Query 1715 CTTTTGAAGATTTTGTATCCTCCCCAAAATCGCCGCTATCTCCTGAAAAAGAGTGGCAGC 1774 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1640 CTTTTGGAGATTCTGTATCCTCCCCAAAATCGCCGCTATCTCCTGAAAAAGAGTGGCAGC 1699 Query 1775 CCAGGGAAAGATACAATAGCTCCAACCAAGGAGACATAGGTAGCACGTATTCTATAGGCC 1834 |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1700 CCAGGGAAAGATACAATAATTCCAACCAAGGAGACAGAGGTAGCACGTATTCTATAGGCC 1759 Query 1835 AAAAGCTGAGGATACGGGTGGGTCCATTGAAGGGGTATCTCTGCCGTGTAATAGCTTTAC 1894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1760 AAAAGCTGAGGATACGGGTGGGTCCATTGAAGGGGTATCTCTGCCGTGTAATAGCTTTAC 1819 Query 1895 GTTATTCTGATGTTACAGTCAAGCTTGATTCCCAGCATAAAATTTTCACAGTTAAAAGTG 1954 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1820 GCTATTCTGATGTTACAGTCAAGCTTGATTCCCAGCATAAAGTTTTCACAGTTAAAAGTG 1879 Query 1955 AGCATCTTGCTGAGGTTCGCGACAGAAACACTGTGCTAAGTACAAGTGGGGATGCGGGTA 2014 ||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1880 AGCATCTAGTTGAGGTTCGCGACAGAAACACTGCGCTAAGTACAAGTGGGGATGCGGGCA 1939 Query 2015 CTGG-TTCCTTTCAACCTTTTGGCATGCTTGGAACAGAAAGCAGCACTGGAGACTGGGCG 2073 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1940 -TGGGTTCCTTTCAACCTTTTGACATGCTTGGAACAGAAAGCAGCACTGGAGACTGGGCG 1998 Query 2074 ATAGGAGCAGGGACGTCAAGTGAGGGTGGTAACTGGAATATAGGAGGCCCTTCTACTGAC 2133 | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1999 AAAGGAGCAGGCACGTCAGGTGAGGGTGGTAACTGGAATATAGGAGGCCCTTCTACTGAT 2058 Query 2134 TCG 2136 ||| Sbjct 2059 TCG 2061 Score = 344 bits (186), Expect = 3e-93 Identities = 333/401 (83%), Gaps = 22/401 (5%) Strand=Plus/Plus Query 3380 GTGGCGGATCTAGCTGGGGCAAGCAAG-ATGGCGATGGGGGCGGTTCAAGCTGGGGTAAA 3438 |||| ||||| ||||||||||||| || || | ||| ||||| || |||||||| || Sbjct 3449 GTGGTGGATCGAGCTGGGGCAAGC-AGAATAATGCTGGTGGCGGATCTAGCTGGGG-CAA 3506 Query 3439 GAGAATGATGCTGGT--GG-TGGATCTAGCTGGGG--AA-AGCAAGACAATGGT-GT--T 3489 | || || ||||| || ||| || |||||||| || || | | |||| || | Sbjct 3507 G-CAA-GACACTGGTGGGGATGGTTCGAGCTGGGGTAAACAGGATGGTGGTGGTAGTAGT 3564 Query 3490 GGTTCAAGCTGGGGTAAACAGAACGATGGTAGTGGTGGTGGATCTAGCTGGGGCAAGCAG 3549 ||||| | |||||||| |||||| ||| || |||||||||| ||||||||||||||| Sbjct 3565 GGTTCTGGTTGGGGTAAGCAGAACAATGCTA---GTGGTGGATCAAGCTGGGGCAAGCAG 3621 Query 3550 AATGATGCTGGTGGGGGATCTAGCTGGGGCAAGCAAGACAGTGGTGGGGATGGTTCGAGC 3609 | |||||||||||||||||||||||||| |||||||||| ||||||||| |||||| ||| Sbjct 3622 AGTGATGCTGGTGGGGGATCTAGCTGGGACAAGCAAGACGGTGGTGGGGGTGGTTCAAGC 3681 Query 3610 TGGGGTAAGCAGGATGGTGGTGGTGATAGTGGTTCTGCTTGGGGTAAGCAGAACAATACT 3669 ||||| || || ||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 3682 TGGGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCTGCCTGGGGTAAGCAGAACGATACT 3741 Query 3670 AGTGGTGG---ATCGAGCTGGGGAAAGCAGAGTGA-TGCTGGTGGGGGATCTAGCTGGGG 3725 |||||||| |||||||||||| ||||||| ||| | ||||||| |||||||| ||||| Sbjct 3742 AGTGGTGGATCATCGAGCTGGGGGAAGCAGAATGACT-CTGGTGGAGGATCTAGTTGGGG 3800 Query 3726 CAAGCAAGACGGTGGTGGGGGTGGTTCAAGCTGGGGTAAAC 3766 |||||||| ||||||||||||||||||||||||||||||| Sbjct 3801 AAAGCAAGATGGTGGTGGGGGTGGTTCAAGCTGGGGTAAAC 3841 Score = 233 bits (126), Expect = 7e-60 Identities = 175/198 (88%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 2984 AAAAGTTTGATGGAGGATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3043 ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2966 AAAAGGATGATGGAGGATCATCGTGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCA 3025 Query 3044 AAAAGGATGATGGAGGATCGTTGT-GGGGAAAAAAGGATGATGGAGGATC-TTCTTGGGG 3101 ||||||| ||||||||||| || | |||| |||||||| ||||| ||||| || | |||| Sbjct 3026 AAAAGGACGATGGAGGATC-TTCTTGGGGCAAAAAGGACGATGGGGGATCGTTGT-GGGG 3083 Query 3102 CAAAGAGGATGATGGAGGATCGTTGT-GGGGTAAGAAGGATGATGGAGAATCGTCGTGGG 3160 ||| |||||||||||||||| || | |||| || ||||||||||||| ||| ||||||| Sbjct 3084 TAAAAAGGATGATGGAGGATC-TTCTTGGGGCAAAAAGGATGATGGAGGATCATCGTGGG 3142 Query 3161 GTAAGAAGGATGATGGAG 3178 ||||||||||||| |||| Sbjct 3143 GTAAGAAGGATGAGGGAG 3160 Score = 228 bits (123), Expect = 3e-58 Identities = 233/281 (83%), Gaps = 27/281 (10%) Strand=Plus/Plus Query 2830 TGGGGTAAAAAGGGTGACGGAGCGGCATCGTGGGGTAAAAAGGATGACGGAG--GC-TCG 2886 ||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| | ||| Sbjct 2887 TGGGGTAAAAAGGATGACGGA--GGC-TCGTGGGGTAATAAGGATGACGGAGTATCATCG 2943 Query 2887 TGGGGTAA-AAAGGATGACGGT-AATAAGGATGATGGAGGATCATCGTGGGGTAAGAA-- 2942 |||||||| ||| ||||||||| || |||||||||||||||||||||||||||||||| Sbjct 2944 TGGGGTAAGAAA-GATGACGGTCAA-AAGGATGATGGAGGATCATCGTGGGGTAAGAAGG 3001 Query 2943 A-GAT----GA----C---GGTC-AAAAGGATGACGGAGGATCGTCTTGGGAG-AAAAAG 2988 | ||| || | || | ||||||| || |||||||| ||||||| | |||||| Sbjct 3002 ACGATGGAGGATCTTCTTGGGGCAAAAAGGACGATGGAGGATCTTCTTGGG-GCAAAAAG 3060 Query 2989 TTTGATGGAGGATCATCATGGGGTAAGAAGGACGATGGAGGATCTTCTTGGGGCAAAAAG 3048 ||||| ||||| | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 3061 GACGATGGGGGATCGTTGTGGGGTAAAAAGGATGATGGAGGATCTTCTTGGGGCAAAAAG 3120 Query 3049 GATGATGGAGGATCGTTGTGGGGAAAAAAGGATGATGGAGG 3089 |||||||||||||| | |||||| || |||||||| ||||| Sbjct 3121 GATGATGGAGGATCATCGTGGGGTAAGAAGGATGAGGGAGG 3161 Score = 174 bits (94), Expect = 4e-42 Identities = 324/428 (76%), Gaps = 44/428 (10%) Strand=Plus/Plus Query 3380 GTGGCGGATCTAGCTGGGGCAAGCAAGATGGC-GATGGGGGCGGTTCAAGCTGGGGTAAA 3438 |||||||||||||||||||||||||||| | | ||||| ||||| |||||||||||| Sbjct 3485 GTGGCGGATCTAGCTGGGGCAAGCAAGACA-CTGGTGGGGATGGTTCGAGCTGGGGTAAA 3543 Query 3439 GAGAATGATGCTGGT-G--GTGGATCTAGCTGGGGAAAGCAAGA-CAATGGT-GT--TGG 3491 || ||| || |||| | |||| ||| | ||||| ||||| || ||||| | || ||| Sbjct 3544 CAGGATGGTGGTGGTAGTAGTGGTTCTGGTTGGGGTAAGCA-GAACAATGCTAGTGGTGG 3602 Query 3492 TTCAAGCTGGGGTAAACAGAACGATGGTAGTGGTGGTGGATCTAGCTGGGGCAAGCA-GA 3550 ||||||||||| || |||| |||| | |||| || | ||||||||||| |||||| || Sbjct 3603 ATCAAGCTGGGGCAAGCAGAGTGATGCTGGTGG-GG-G-ATCTAGCTGGGACAAGCAAGA 3659 Query 3551 ATGATGCTGGTGGG-GGATCTAGCTGGGGCAAGCAAGACAGTGGTGG-GG-A-TGGTTCG 3606 | || ||| ||| || || ||||||||||| ||||| ||||||| || | |||||| Sbjct 3660 CGG-TGGTGG-GGGTGGTTCAAGCTGGGGCAAACAAGATGGTGGTGGTGGCAGTGGTTCT 3717 Query 3607 AGC-TGGGGTAAGCAG---GATGGTGGTGGTG-AT-AGTGGTTCTGCTTGGGGTAAGCAG 3660 || |||||||||||| ||| | |||||| || | | | ||| |||| |||||| Sbjct 3718 -GCCTGGGGTAAGCAGAACGATACTAGTGGTGGATCA-TCGAGCTG---GGGG-AAGCAG 3771 Query 3661 AACAA-TACTAGTGGTGGATCGAGCTGGGGAAAGCA-GAGTGATGCTGGTGGG-GGATCT 3717 || | | || |||| ||||| || ||||||||||| || || || ||| ||| || || Sbjct 3772 AATGACT-CTGGTGGAGGATCTAGTTGGGGAAAGCAAGA-TGGTGGTGG-GGGTGGTTCA 3828 Query 3718 AGCTGGGGCAAGC---A-A--GACGGTGGTGGGGGTGGTTCAAGCTGGGGTAAACAAGAT 3771 |||||||| || | | | || |||||||| ||||| || || ||||| || || | | Sbjct 3829 AGCTGGGGTAAACCGGATAACGATGGTGGTGGTGGTGGATCGAGTTGGGGCAAGCAGGGT 3888 Query 3772 GGTGGTGG 3779 | |||||| Sbjct 3889 GATGGTGG 3896 Score = 65.8 bits (35), Expect = 3e-09 Identities = 37/38 (97%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 2911 AAGGATGATGGAGGATCATCGTGGGGTAAGAAAGATGA 2948 |||||||||||||||||||||||||||||||| ||||| Sbjct 3118 AAGGATGATGGAGGATCATCGTGGGGTAAGAAGGATGA 3155 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 169546487715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5