BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04320.2
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487213 jgi|Araly1|487213|fgenesh2_kg.6__347__AT5G04320.1 1930 0.0
Ahg939833 jgi|Araly1|939833|scaffold_600377.1 246 4e-64
> Ahg487213 jgi|Araly1|487213|fgenesh2_kg.6__347__AT5G04320.1
Length=1436
Score = 1930 bits (1045), Expect = 0.0
Identities = 1300/1418 (92%), Gaps = 38/1418 (3%)
Strand=Plus/Plus
Query 477 GGAAAACATGACACTGATGAAAGCTCTAGCACACCGAAATAAACTCGTCGAGTTGAGCGG 536
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 52 GGAAAATATGACACTGATGAAAGCCCTAGCACACCGAAATAAACTCGTCGAGTTGAGCGG 111
Query 537 TATTGAGATTCAGAAACTGAGGATTAACTTACGGAGTGTGCAGGAAAAGAATTTGCAGCT 596
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 112 TATTGAGATTCAGAAACTGAGGATCAACTTACGGAGTGTGCAGGAAAAGAATTTGCAGCT 171
Query 597 TGCTCAGGCAAACAGTCAGATGTTAGCGGAACTCAATACAAATAGAGACAGACTCAAGGA 656
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 172 TGCGCAGGCAAACAGTCAGATGTTAGCGGAACTCAATACAAATAAAGACAGACTCAAGGA 231
Query 657 -TCTCCAGCATGAACTTGGCTGCAAGAATGCTTTACTTAAAGTCAAGAAACATCTTGAGG 715
| |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 232 AT-TCCAGCATGAACTTGGCTGCAAGAATGCATTACTTAAGGTCAAGAAACAGCTTGAGG 290
Query 716 AGCAAGTACTTCCACGTACACATCATGAATCGAAAGACAAGGTTTCAGCAAGCGCTTCTG 775
|||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 291 AGCAAGCACTTCCATGTACACATCATGCATCGAAAGACAAGGTTTCAGCAAACGCTTCTG 350
Query 776 ATGGGGATTGCAAATCCTTTCAGGTGCATGACATAAAACATAAAGATACCAAGAGAAAGC 835
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 351 ATGGGGATTGCATATCCTTTCAGGTGCATGACATGAAACATAAAGATACCAAGAGAAAGC 410
Query 836 GAACAACAAGGATAAAATCTTCAGTAAGTGCCGACGTCAAGCCAATAC-CTGTGAATGAT 894
|||| ||||||||||| |||||||| ||||||||||||||||||||| | ||||||||
Sbjct 411 GAACGCCAAGGATAAAACCTTCAGTATGTGCCGACGTCAAGCCAATACAC-GTGAATGAA 469
Query 895 TCTAACAGTAAAGCTAACCGTAAAAGAAGAGTTTCTGGAGTAATAGATACTACTGGTATT 954
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TCTAACAAAAAAGCTAACAGTAAAAGAAGAGTTTCTGGAGTAATAGATACTACTGGTATC 529
Query 955 CCCGAAGAGATCTGTCAGACTGAAGATGACATTGATAAGGGGGTTGTCTCTCGAGGGGTA 1014
|||||||||| |||||||||| ||||||||||||| |||||||||| | | | || |
Sbjct 530 CCCGAAGAGACCTGTCAGACTAAAGATGACATTGAAAAGGGGGTTGACAAT-GTGG--TC 586
Query 1015 AACCAAGATA-TTGACAATGTTGTCAACAAGAAGTTTGTTCCTGATGCAGCAAACCCGGT 1073
||| |||| | || |||| | | || | | | | ||| || ||||||
Sbjct 587 AAC-AAGA-AGTT-----TGTT--C--CT-GA--T--G--C---A-GCA--AA-CCCGGT 621
Query 1074 AAAAGAGAGTGTGCATCGCAAGAGGCAATGTACACGAAGGCAATCTACCAGATTTGATGT 1133
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 622 AAAAGACAGTGTGCATCGCAAGAGGCAATGTACACGAAGGCAATCTACCAGGTTTGATGT 681
Query 1134 TCAAGAAACTAAACAAACGGAAAAGTTGCTTGAGATGGATGGTGCCAAAGAAAGTAAAGA 1193
|||||||||| ||||||||||||| ||||| ||||| |||| ||||||||||||||||||
Sbjct 682 TCAAGAAACTGAACAAACGGAAAAATTGCTCGAGATAGATGATGCCAAAGAAAGTAAAGA 741
Query 1194 AACCGCAAG-CTTCTCTTTGAGAAGACGGTCTGCTCGGTTAAGGCACGAAGAAGCTGAAC 1252
||||| ||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 742 AACCGAAAGGCT-CTCTTTGAAAAGACGGTCTGCTCGGTTAAGGCCCGAAGAAGCTGAAC 800
Query 1253 CATGTAAAAGCTTACATGAGGGAGACGAAGTCAGGGAGACAATCAAGAGGAGAAGAGTCT 1312
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 801 CATGTAAAAGCTTCCATGAGGGAGACGAAGTCAGAGAGACAATCAAGAGGAGAAGAGTCT 860
Query 1313 CTTTAAGACTGTCTGCAAGGTTTGATATACAAGAACCGCATGTGACTGAAACCTCGAATG 1372
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 861 CTTCAAGACTGTCTGCAAGGTTTGATATACAAGTACCGCAAGTGACTGAAACCTCGAATG 920
Query 1373 CTGACGATGCAAGAAGCATAGTAATCGAAGAATCTGCTGGATCAAGATCGGAATCTGTAG 1432
|||| | |||| |||||||||||||||||||||||||||||||||| || | | ||||||
Sbjct 921 CTGATGTTGCAGGAAGCATAGTAATCGAAGAATCTGCTGGATCAAGGTCTGTAGCTGTAG 980
Query 1433 AACCATCCGAAAGCAG-GCATGAAACAAAAGAGATAACCCGGAAACGCAGTTTCTCAACG 1491
||||||| |||||||| | |||| |||||||||| || ||||||||||||| ||||||||
Sbjct 981 AACCATCTGAAAGCAGAG-ATGACACAAAAGAGACAAACCGGAAACGCAGTGTCTCAACG 1039
Query 1492 AGAAGACAATCAACAAAGGGTAAATCTCAAACCGATGAAGCCATTAAAGAAATAGCGACA 1551
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1040 AGAAGACAATCAACAAAGGGTAAATCTCAAACCGATGAAGCCATAAAAGAAACAGCGACA 1099
Query 1552 GACCCATCTTTGGTCAACACCATAGTTCAAGAGTGTGATCAGGAAACAGAATCAAAGGAT 1611
|||| |||||||| ||||| ||||||||||||||||| ||| ||| ||||||||||||||
Sbjct 1100 GACCAATCTTTGGGCAACAACATAGTTCAAGAGTGTGGTCATGAAGCAGAATCAAAGGAT 1159
Query 1612 AAGCCTAAAGCTGATGAAAACGAAGGGATGACAAGAAGATCATCTGTGGGAAGACCATCG 1671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1160 AAGCCTAAAGCTGATGAAAACGAAGGGATGACAAGAAGATCATCTGTGGGAAGACCTTCG 1219
Query 1672 AGACATGCCGCAGAGAAAGTCCAATCATACAGAGAAGTCTCACTTAGAGTAAAGATGCGA 1731
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1220 AGACATGCCGCAGAGAAAGTCCAATCATACAGAGAAGTCTCACTTAAAGTGAAGATGCGA 1279
Query 1732 CGAAAATGCTAAATCTCCAGCATTGTCTTGTGCTTTTGTATTCTTAATCTGCAAAATTGT 1791
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCAAAATGCTAAGCCTCCAGCATTGTCTTGTGCTTTTGTATTCTTAATCTGCAAAATTGT 1339
Query 1792 TATTCAAAAGCTTACTTCATGCTCTTGTATGGCTTTTGCCTTCTATATCTACGCCTCTGT 1851
| |||||||||||||| ||||||||| |||| |||| ||||||||||||||||| |||||
Sbjct 1340 TGTTCAAAAGCTTACTCCATGCTCTTCTATGACTTT-GCCTTCTATATCTACGCTTCTGT 1398
Query 1852 ATTTTGTCGTTACTTTATTATGCTAATTTTTCTTGAAT 1889
||||||||||||| || |||||||||||||||||||||
Sbjct 1399 ATTTTGTCGTTACCTTCTTATGCTAATTTTTCTTGAAT 1436
> Ahg939833 jgi|Araly1|939833|scaffold_600377.1
Length=295
Score = 246 bits (133), Expect = 4e-64
Identities = 239/285 (84%), Gaps = 27/285 (9%)
Strand=Plus/Minus
Query 3 Att-tttttGTAAATTTGTTGACTTGGTTTGCCGCCGATCCAACCGTATCTTT--CCGTC 59
||| ||||||||||||| || ||||||||||||||||| ||||||||||||| || ||
Sbjct 276 ATTATTTTTGTAAATTTATTAACTTGGTTTGCCGCCGAAGCAACCGTATCTTTCCCCATC 217
Query 60 TTCTTCGATAGAGTGAGAATCTAGGGTTTGGGAGATGAGCAGTCGATTCCGTTGGATCCC 119
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 216 TTCTTCGATAGA--AAGAATCTAGGGTTTGGGAGATGAGCAGTCGATTTCGTCGGATCCC 159
Query 120 CAGCA-CCACATCTGTATGAAATT--A-AAG-G--C------TGTGAGTCTATCTGAAAG 166
| || ||||||||||| | |||| | ||| | | ||||||||| ||||||
Sbjct 158 CT-CAACCACATCTGTA-GCAATTTTAGAAGCGAGCGAAAGCTGTGAGTCT--CTGAAAT 103
Query 167 CTT--GATTTCATTGGCTTCGATTTGCTTGAAGAGATAATCGAAGAGATTCCGGTGACGA 224
||| ||||| ||||| ||||||||||||| |||| |||||| |||||||||||| |||
Sbjct 102 CTTCTGATTT--TTGGCGTCGATTTGCTTGAGGAGACAATCGAGGAGATTCCGGTGCCGA 45
Query 225 CGGTGATACATTGTTGACTTCCATTTTCTTCCGAATTTTGAAAGG 269
|| || |||||||||||||||||||||||| ||||||| ||||||
Sbjct 44 CGATGGTACATTGTTGACTTCCATTTTCTTTCGAATTT-GAAAGG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5