BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04330.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487214 jgi|Araly1|487214|fgenesh2_kg.6__348__AT5G04330.1 2351 0.0
> Ahg487214 jgi|Araly1|487214|fgenesh2_kg.6__348__AT5G04330.1
Length=1640
Score = 2351 bits (1273), Expect = 0.0
Identities = 1501/1611 (93%), Gaps = 16/1611 (1%)
Strand=Plus/Plus
Query 113 ACTAAATCGTATCCAAAATGCTTACTCTAATGACTCTCATCGTTCTTGTCCCTCTTCTTC 172
|||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||
Sbjct 34 ACTAAATCGTATCC-AAATGCATACTCTAATGACTCTCATCCTTCTTGTTCCTCTTCTTC 92
Query 173 TTTTTCTCTTCCCCCACCTCCTTTT-ACGGCGGCAGATGCTTCTGAAACCCTACCCTCCT 231
| |||||||||| |||||| |||| | |||||| || ||||| ||||| |||||||||
Sbjct 93 TATTTCTCTTCCGCCACCT-TTTTTCATGGCGGCGGAGGCTTCGGAAACTCTACCCTCCC 151
Query 232 GGCCCCAAAGGCTTACCCGTCATTGGAAATATTCTCATGATGAACCAGTTTAACCACCGG 291
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 152 GGCCCCAAAGGCTTACCCGTCATTGGAAATATTCTCATTATGAACCACTTCAACCACCGC 211
Query 292 GGTCTGGCCAAGCTCAGCCGTATATACGGTGGGTTGCTCCATCTCCGCCTCGGATTTTCC 351
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 212 GGCCTGGCCAAGCTCAGCCGTATCTACGGTGGGTTGCTCCACCTCCGCCTCGGCTTTTCC 271
Query 352 CACATTTTCGTCGTTTCTTCTCCGGACATTGCGCGTCAAGTCCTCCAAGTCCAAGACCAC 411
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 272 CACATTTTCGTCGTTTCTTCTCCTGACATCGCTCGTCAAGTCCTCCAAGTCCAAGACCAC 331
Query 412 GTTTTCTCAAACCGTCCCACCACAATCGCAATCCGATACTTGACCTACGGAGGATCCGAT 471
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 332 GTTTTCTCAAACCGTCCCACCACAATCGCAATCCGATACTTGACATACGGTGGATCCGAT 391
Query 472 CTTGCATTCTGCAATTACGGCCCGTTTTGGCGTCGGATGAGAAAACTCTACGTCATGATG 531
|||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 392 CTTGCATTCTGCAACTACGGCCCGTTTTGGCGTAGGATGAGAAAACTGTACGTCATGATG 451
Query 532 CTCTTTAGCCGTAAACGGGCCGAGTCGTGGGTCTCTGTTGATGAAGAGGTCCACAAATCG 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 452 CTCTTTAGCCGTAAACGGGCCGAGTCTTGGGTCTCTGTTGATGAAGAGGTCCACAAATCG 511
Query 592 GTCCGTTTAGTGGCTTCCAACGTCGGAAAACCACTAAACATATGTAAACTAGCATTTTCC 651
|||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 512 GTCCGTTTTGTGGCTTCCAAGGTCGGGAAACCATTAAACATATGTAAACTAGCATTTTCC 571
Query 652 CTATCAAGAGACATAACGTTCCGAGCAGCTTTCGGTTCCTCCTCATCCACATCTGATGAA 711
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 572 TTATCAAGAGGCATAACGTTCCGAGCAGCTTTCGGTTCCTCCTCATCCACTTCTGATGAA 631
Query 712 AGCCGTTTGGACGAGTTCCTTGAGATCATTCAAGAGTTCTCTAAGCTCTTTGGTGAGTTT 771
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGCCGATTAGATGAGTTCCTTGAGATCATTCAAGAGTTCTCTAAGCTCTTTGGTGAGTTT 691
Query 772 AACGTAGCGGATTATGTCCCGTCGTGGCTCAGTTGGATTGACCCGCAAGGGATAAACGGG 831
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AACGTAGCAGATTATGTCCCGTCGTGGCTCAGTTGGATTGACCCGCAAGGGATAAACGGG 751
Query 832 CGAGTTGAGAAAGCCCGAAAATCTCTAGACGGTTTCATTGAGTCCGTCATCGATGATCAC 891
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 752 CGAGTTGAGAAAGCCCGAAAATCTCTGGACGGTTTCATTGAGTCCGTCATCGACGATCAC 811
Query 892 T--T-GCACAAGAAGAAGAGAGAACATGATAACGTTGACGAAGAGACTGATATGGTAGAT 948
| | |||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||
Sbjct 812 TACTTGCACAAGAAGAAGAGAGAACATAATAACCTTGTCGAAGAGACCGATATGGTTGAT 871
Query 949 CAATTACTTGCGTTCTACGAAGAAGAAGTCAAAGTCAACAACTCAGTCACCAAAATTAAT 1008
||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 872 CAATTACTTACGTTCTACGAAGAAGAAGTCAAAGTCAACACCTCAGACACCAAAATTAAT 931
Query 1009 CTCGATAACATAAAAGGCATCATCATGGATGTGATGTTCGGAGGAACGGAGACGGTGGCA 1068
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 932 CTCGATAACATAAAAGGCATCATCATGGATGTGATGTTCGGAGGAACCGAGACGGTGGCA 991
Query 1069 TTAGCAATCGAATGGGTGCTAACCGAGATACTCCGGAGCCCCGAGAACATGAAACGGGTC 1128
||||||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||
Sbjct 992 TTAGCAATCGAGTGGGTCCTTACGGAGCTACTCCGGAGCCCCGAGAACATGAAACGGGTC 1051
Query 1129 CAGGACGAGCTAACGAGTGTGGTCGGGCTTGACAGATGGCGCGTGGAGGACACGCACCTC 1188
||||||||| || |||||||||||||||||||| || |||||||||||||||| || |||
Sbjct 1052 CAGGACGAGATAGCGAGTGTGGTCGGGCTTGACCGAAGGCGCGTGGAGGACACACATCTC 1111
Query 1189 GAGAAGCTCACTTTCCTCAAGTGTATCCTCAAGGAGACCCTCCGGCTCCACCCGCCTTTC 1248
||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |||
Sbjct 1112 GAGAAGCTCACTTTCCTGAAGTGTACCCTTAAGGAGACCCTCCGGCTTCACCCGCCGTTC 1171
Query 1249 CCTCTCCTCCTCCACGAGACGGTGAAGGACACTGAGATTTCCGGTTACTTCATCCCCAAG 1308
|||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1172 CCTCTCCTGCTCCACGAGACGGTGGAGGACACCGAGGTTTCCGGTTACTTCATCCCCAAG 1231
Query 1309 GGTTCGCGTGTGATGGTCAATACCTACGCTCTAGGGCGTGACCCGAATTCTTGGTCCGAC 1368
|| || |||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 1232 GGATCACGTGTGATGGTCAATACCTATGCTCTAGGGCGTGATCCGGATTCTTGGTCCGAC 1291
Query 1369 CCGGAAAGTTTT-AACCCGGGTAGGTTTTTAAACCCGATTGCTCCGGATCTGAAGGGGAA 1427
||||||| |||| ||||||||||||||||| |||| | |||||| || |||||||| ||
Sbjct 1292 CCGGAAA-TTTTCAACCCGGGTAGGTTTTTGGACCCAAGTGCTCCAGACCTGAAGGGTAA 1350
Query 1428 TAATTTCGAATTTGTTCCATTCGGGTCGGGTCGGAGATCGTGCCCGGGTATGCAACTCGG 1487
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TAATTTCGAATTCGTTCCTTTCGGGTCGGGTCGGAGATCGTGCCCGGGTATGCAACTCGG 1410
Query 1488 GTTGTACGCATTTGAGCTTGCGGTGGCTCATCTTCTACACTGCTTCACGTGGAGTTTACC 1547
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1411 GTTGTACGCGTTTGAGCTTGCGGTTGCTCAGCTTCTACACTGCTTCACGTGGAGTTTACC 1470
Query 1548 GGACGGTATGAATCCCGGTGACGTCGACACCGTTGAAGGACCGGGTCTCACCGTTCCTAA 1607
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1471 GGACGGTATGAAACCCGGTGACGTGGACACCGTTGAAGGGCCGGGTCTCACCGTTCCTAA 1530
Query 1608 GGCAATTCCTTTGGTGGCGGTGCCGACCACGCGCCTCCTCTGCCCCATCGTCGTCTCG-- 1665
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1531 GGCAACTCCTTTGGTGGCGGTGCCGACCACGCGCCTCCTCTGCCCCATCGTC-TCTTGAA 1589
Query 1666 T---GAA--GCCTCCACCTTTGAAAACAAGAGTTTTCGGAATCGGAGTAAT 1711
| ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1590 TCCTGAAAAGCCTCCACCTATGAAAACAAGAGTTTTCGGAATCGGAGTAAT 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5