BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04340.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939830 jgi|Araly1|939830|scaffold_600374.1 1099 0.0
> Ahg939830 jgi|Araly1|939830|scaffold_600374.1
Length=763
Score = 1099 bits (595), Expect = 0.0
Identities = 694/741 (94%), Gaps = 10/741 (1%)
Strand=Plus/Plus
Query 64 AAGATAATGGCACTTGAAACTCTTACTTCTCCAAGATTATCTTCTCCGATGCCGACTCTG 123
|||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 15 AAGATAATGGCACTTGAAGCTCTTAGTTCTCCAAGATTAGCTTCTCCGATGCCGACTCTG 74
Query 124 TTTCAAGATTCAGCACTAGGGTTTCATGGAAGCAAAGGCAAACGATCTAAGCGATCAAGA 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 75 TTTCAAGATTCAGCACTAGGGTTTCATGGGAGCAAAGGCAAACGATCTAAGCGATCAAGA 134
Query 184 TCTGAATTCGACCGTCAGAGTCTCACGGAGGATGAATATATCGCTTTATGTCTCATGCTT 243
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 135 TCTGAATTCGACCGTCAGAGTCTAACGGAGGATGAATATATCGCTTTGTGTCTCATGCTT 194
Query 244 CTTGCTCGCGACGGAGATAGAAACCGTGACCTTGACCTGCCTTCTTCTTCGTCTTCACCT 303
|||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||
Sbjct 195 CTTGCTCGCGACGGAGATCGAACCCGTGACCTTGACCTGCCTCCTTCTTCTTCTTCACCT 254
Query 304 CCTCTGCTTCCTCCTCTTCCTACTCCGATCTACAAGTGTAGCGTCTGTGACAAGGCGTTT 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 255 CCTCTGCTTCCTCCTCTTCCTTCTCCGATCTACAAGTGTAGCGTCTGTGACAAGGCGTTT 314
Query 364 TCGTCTTACCAGGCTCTTGGTGGACACAAGGCAAGTCACCGGAAAAGCTTTTCGCTTACT 423
|| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 315 TCTTCTTACCAGGCTCTCGGTGGACACAAGGCAAGCCACCGGAAAAGCTTTTCGCTAACT 374
Query 424 CAATCTGCC------GGAGGAGATGAGCTGTCGACATCGTCGGCGATAACCACGTCTGGT 477
||||| ||| ||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 375 CAATCAGCCGGAGGAGGAGGAGATGAGCCATCGACGTCGTCGGCGATAACCATGTCTGGT 434
Query 478 ATATCCGGTGGCGGG-GGAGGAAGTGTGAAGTCGCACGTTTGCTCTATCTGTCATAAATC 536
|| |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 435 ATCTCCGGTGG-GGGAGGAGGAAGTGTGAAGTCGCACGTTTGCTCCATCTGTCATAAATC 493
Query 537 GTTCGCCACCGGTCAAGCTCTCGGCGGCCACAAACGGTGCCACTACGAAGG-AAAGAACG 595
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | ||
Sbjct 494 GTTCGCCACCGGTCAAGCTCTGGGCGGTCACAAACGGTGCCACTACGAAGGTAAA-AGCG 552
Query 596 GAGGCGGTGTGAGTAGTAGCGTGTCGAATTCTGAAGATGTGGGGTCTACAAGCCACGTCA 655
| ||||| | ||| |||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 553 GCGGCGGCGGGAGCAGTAGCGTGTCGAATTCTGAAGGTGTAGGGTCCACAAGCCACGTCA 612
Query 656 GCAGTGGCCACCGTGGGTTTGACCTCAACATACCGCCGATACCGGAATTCTCGATGGTCA 715
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GTAGCGGCCACCGTGGGTTTGACCTCAACATACCGCCGATACCGGAATTCTCGATGGTCA 672
Query 716 ACGGAGACGAAGAGGTGATGAGTCCTATGCCGGCGAAGAAACTCCGGTTTGACTTCCCGG 775
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 673 ACGGAGACGAAGAGGTGATGAGTCCCATGCCGGTGAAGAAACTCCGGTTTGACTTCCCGG 732
Query 776 AGAAACCCTAAACATAAACCT 796
|||||||||||||||| ||||
Sbjct 733 AGAAACCCTAAACATATACCT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5