BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G04347.1

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939832 jgi|Araly1|939832|scaffold_600376.1                        619    8e-177


> Ahg939832 jgi|Araly1|939832|scaffold_600376.1
Length=433

 Score =  619 bits (335),  Expect = 8e-177
 Identities = 395/423 (93%), Gaps = 8/423 (2%)
 Strand=Plus/Plus

Query  44   aaCAATATGAAGAATCTCTTTATCTTCGTGATTCTTCTTAGTGTATGCATCAGAAATACA  103
            |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct  15   AACAATATGAAGAATCTCTTCATCTTCTTGATTCTTCTTAGTGTATGCATCGGAAATACA  74

Query  104  TTCGGAATAAGTACACTCTTGGTCAAAAATGAGCTGAACAATAAAGTCCTTGGTGTGCGT  163
             ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  75   ATCGGAATAAGTACACTCTTGGTCAAGAATGAGCTGAACAATAAAGTCCTCGGTGTGCGT  134

Query  164  TGTAGATCTAAGGACGACAACCTTGGTGATCATATTTTGCGCGTTGGCCAAATGACCAAA  223
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  135  TGTAGATCTAAGGACGACCACCTTGGTGATCATATTTTGCGCGTTGGCCAAATGACCAAA  194

Query  224  AATAATTTTGATGATAATGTTTGGAGGAGGACGCTTTTCTGGTGTAATTTGTGGAAAGGA  283
            || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  195  AACAATTTTGATGATAATGTTTGGAAGAGGACACTTTTCTGGTGTAATTTGTGGAAAGGA  254

Query  284  CCTGATTTTAAGCTCCACGTAGCGTTTGATGCATACAGATCTCAATGGAAAGCGGAT-AT  342
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |  ||
Sbjct  255  CCTGATTTTAAGCTCCACGTAGCGTTTGATGCATACAGATCTCAGTGGAAAGCA-ACCAT  313

Query  343  TGGGCCTAGGTACTTGTGGATAGCAAGAGAGGATGGGATCTATTACACACAACATCCCGA  402
             ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  314  GGGGCCTACGTACTTGTGGATAGCAAGAGAGGATGGGATCTATTACACACAAGATCCC-A  372

Query  403  G-ACACCTCCTA--AAAAGAAATATGATTGGCCAAAGGCTTAAACGCCCAAGGATTAGGG  459
            | || ||||||   ||||||  ||||||||||||||||||||||||||| | ||||||||
Sbjct  373  GGACGCCTCCTGCGAAAAGA--TATGATTGGCCAAAGGCTTAAACGCCCGATGATTAGGG  430

Query  460  TTT  462
            |||
Sbjct  431  TTT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28973416920


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5