BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04370.2
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487217 jgi|Araly1|487217|fgenesh2_kg.6__351__AT5G04370.2 2100 0.0
Ahg928863 jgi|Araly1|928863|scaffold_301320.1 704 0.0
> Ahg487217 jgi|Araly1|487217|fgenesh2_kg.6__351__AT5G04370.2
Length=1379
Score = 2100 bits (1137), Expect = 0.0
Identities = 1307/1388 (94%), Gaps = 16/1388 (1%)
Strand=Plus/Plus
Query 35 ACTAAGTTTTCTCTTATATAGAAACACTCGTTATTCTAATTTGCCACTATATCC---att 91
|||||||||| |||| ||||||||||||||| |||||||||| ||||||| ||| ||
Sbjct 1 ACTAAGTTTTTTCTTGTATAGAAACACTCGTAATTCTAATTTCCCACTATTTCCTTTTTT 60
Query 92 ttttgcttatttatttatttga-atttttttaaattatat-taATCTCTGGAAAGATTGC 149
|||||||||||||||||||||| | ||||||||||||| |||||||| |||||||||
Sbjct 61 TTTTGCTTATTTATTTATTTGACAAAATTTTAAATTATATATAATCTCTAGAAAGATTGG 120
Query 150 AAGATTGGGTATGATTGAATGTGGAACTGTGTATCGCAACAACTCGGCGTGTTTCACGTT 209
||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 121 AAGATTGGGCATGATTGAATGTGCAACTGTGTATTGCAACAACTCGGCGTGTTTCACGTT 180
Query 210 CAAGATATGTCCCAGTCCCACCTCTATAAATAAAACGACTAAGAGATGTAATGGTAAGAG 269
||||||| | |||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 181 CAAGATA--T----GTCCCACCTCTATAAATAAAACGACTGAGAGGTGTAATGGTAAGAG 234
Query 270 TGAAAATGAGAGGAAAAACGGCGATGAAGAAAGAATTAGTAAATACTCCTT-TGTGAGTC 328
||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 235 TGAAAATGAAATGAAAAACGGCGATGAAGAAAGAATTAGTAAATACT-CTTATGTGAGTC 293
Query 329 CACTGTGTATGCGTGGAGGAGATGGATACAATAGTTACTCCAGCAATTCTCTTCTTCAGA 388
| || |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 294 CTCTATGTATGAGTGGAGGAGATGGATACAACAGTTACTCCACCAATTCTCTTCTTCAGA 353
Query 389 GAAGAGTGTTATCAAAGGCTAAACCGGTATTGGTTAAGAACACAAAGGACCTGATGATAA 448
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 354 GAAGAGTGTTATCAAAGGCTAAACCGGTATTGGTTAAGAACACAAAGGAACTGATGATAA 413
Query 449 ACTTAAACTTTCCTACATACATTAAAGTAGCTGATTTGGGCTGTTCATCAGGACAGAATA 508
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |
Sbjct 414 ACTTAAACTTTCCTACATACATTAAAGTAGCTGATTTGGGTTGTTCATCTGGACAAAACA 473
Query 509 CGTTCTTGGCAATGTCTGAAATTATCAATACAATCAATGTGTTTTGTCAACAGAGGAACC 568
| |||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 474 CATTCTTGGCGATGTCTGAAATTATCAATACAGTCAATGTGTTATGTCAACAGAGGAACC 533
Query 569 AAAACCCACCAGAAATAGATTGTTGTCTAAATGATCTCCCTAGTAACGATTTTAACACAA 628
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 AAAACCCACCAGAAATAGATTGTTGTCTAAATGATCTCCCTAATAACGATTTTAACACAA 593
Query 629 CGTTCAAATTCATACAATTCTTCAATGGGATGAACATCACGAGCAAAGAATCATACTTTG 688
||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 594 CGTTCAAATTCATACAATTCTTCAACGAGAAGAACATCACGAGCAAAGAATCATACTTTG 653
Query 689 TCTATGGAGTCCCCGGTTCTTTCTACTCGAGGCTCTTCCCTCGGAGGAGTCTTCATTTCG 748
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TCTCTGGAGTCCCCGGTTCTTTCTACTCGAGGCTCTTCCCTCGGAGGAGTCTTCATTTCG 713
Query 749 TACATTCCTCTTATGGTCTCCATTGGCTCTCTAAGGTTCCTGAAGGGCTTGAGAAGAATA 808
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 714 TACATTCCTCTTATGGTCTCCATTGGCTCTCTAAGGTTCCTGAAGGGCTTAAGAAGAGTA 773
Query 809 AGATGAGTGTGTACATCACAAATTCAAGTCCTCTAAGCACATACAAGGCTTACTTAAATC 868
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 774 AGATGAGTGTGTACATCACAAATTCAAGTCCTCTAAGTACATATAAGGCTTACTTAAATC 833
Query 869 AATTCCAAAGAGATTTTGCGACATTCCTTAAACTGCGTTCTGAAGAGATGGTTTCTAATG 928
||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 AATTCCAAACAGATTTCGCGACATTTCTTAAACTGCGTTCTGAAGAGATGGTTTCTAATG 893
Query 929 GACGCATGGTTCTCACTTTCATTGGTCGAAACACTATTGATAATCCATTGCATAGAGATT 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GACGCATGGTTCTCACTTTCATTGGTCGAAACACTATTGATAATCCATTGCATAGAGATT 953
Query 989 GTTGTCACTTTTGGACATTATTATCCAAATCTCTTCGTGACCTAGTCGCCGAGGGCCTTG 1048
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| ||||
Sbjct 954 GTTGTCACTTTTGGACATTATTATCCAGATCTCTCCGTGACCTAGTCGTCGAGGGTCTTG 1013
Query 1049 TGAGTGCATCAAAGGTAGATTCATTCTAC-TTACCGTTTTATGACCCCAACGAAAAAGAA 1107
||||| |||| ||||||||||| |||||| || || ||||||||||||||||||||||||
Sbjct 1014 TGAGTCCATCGAAGGTAGATTCGTTCTACATT-CCATTTTATGACCCCAACGAAAAAGAA 1072
Query 1108 ATAAAGGAGATGGTACAGAAAGAAGGTTCCTTTGAAATCAGAGACTTGGAGACACATGGA 1167
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 GTAAAGGAGGTGGTACAGAAAGAAGGTTCCTTTGAAATCAAAGACTTGGAGACACATGGA 1132
Query 1168 TATGATCTTGGCCATTGTAACCAAGACGAGTCAAAGAGAAGTAAATCAGGGCAAAATGAA 1227
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1133 TATGACCTTGGCCATTGTAACCAAGACGAGTCAAAGAGAAGTAAATCAGGGAAAAATGAA 1192
Query 1228 GCTAATTACATCAGAGCGGTGAGTGAACCACTGCTTGCGGCTCACTTTGGAGATGCCATT 1287
|| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1193 GCCAATTACATCAGAGCGGTGAGTGAACCACTGCTCGTAGCTCACTTTGGAGATGCCATC 1252
Query 1288 ATCAACATATTGTTTAACAAGTTTGCATGTCATGTGTCTCAACATGTTAGTTGCAGGAAC 1347
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1253 ACCAACATATTGTTTAACAAGTTTGCATGTCATGTGTCTCAACATGCTAGTTGCAGGAAC 1312
Query 1348 AAAACGACCGTCAGCATAGTCGTTTCACTGACTAAGaaaaaaaCTTTCCTCATGTCCTAA 1407
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1313 AAAACGACCGTCAGCATAGTCGTTTCATTGACTAAGAAAAAA-CTTTCCTCATGTCCTAA 1371
Query 1408 AGTTTAAT 1415
||||||||
Sbjct 1372 AGTTTAAT 1379
> Ahg928863 jgi|Araly1|928863|scaffold_301320.1
Length=1187
Score = 704 bits (381), Expect = 0.0
Identities = 851/1075 (79%), Gaps = 44/1075 (4%)
Strand=Plus/Plus
Query 334 TGTATGCGTGGAGGAGATGGATA-CAATAGTTACTCCAGCAATTCTCTTCTTCAGAGAAG 392
|||||| |||| ||||||||| | ||| |||||||||| |||||||| |||||||||||
Sbjct 108 TGTATGAGTGGTGGAGATGGA-ACCAACAGTTACTCCACCAATTCTCGTCTTCAGAGAAA 166
Query 393 AGTGTTATCAAAGGCTAAACCGGTATTGGTTAAGAA-CACA-AAGGACCTGATGATAAAC 450
||| ||| ||| ||| ||||| || |||| ||| || |||| || || ||||||| | |
Sbjct 167 AGTTTTAACAATGGCCAAACCAGTCTTGG-TAAAAACCACAGAA-GAAATGATGATGAGC 224
Query 451 TTAAACTTTCCTACATACATTAAAGTAGCTGATTTGGGCTGTTCATCAGGACAGAATACG 510
||| |||||||||| ||||| ||||| ||||| ||||| ||||| || ||||| || |||
Sbjct 225 TTAGACTTTCCTACGTACATCAAAGTTGCTGAATTGGGTTGTTCTTCGGGACAAAACACG 284
Query 511 TTCTTGGCAATGTCTGAAATTATCAATACAATCAATGTGTTTTGTCAACAGAG-GAACCA 569
|| ||||| || ||||| || ||||| || || | |||||| || ||||| | |||| |
Sbjct 285 TTTTTGGCTATCTCTGAGATCATCAACACCATTAGTGTGTTGTGCCAACA-TGTGAACAA 343
Query 570 AAACCCACCAGAAATAGATTGTTGTCTAAATGATCTCCCTAGTAA-CGATTTTAACACAA 628
||||||||||||||||||||||||||| || |||||||| | || |||||| ||||| |
Sbjct 344 AAACCCACCAGAAATAGATTGTTGTCTGAACGATCTCCCG-GAAAACGATTTCAACACGA 402
Query 629 CGTTCAAATTCATACAATTCTTCAATG-GGA--TGAACATCACGAGCAAAGAATCATACT 685
| ||||| ||| ||| ||||||||| ||| | | ||||| ||||||| ||| | ||
Sbjct 403 CCTTCAAGTTCGTACCATTCTTCAACAAGGAGCTCATGATCACAAGCAAAGCATCGTGCT 462
Query 686 TTGTCTATGGAG-TCCCCGGTTCTTTCTACTCGAGGCTCTTC-CCTCGGAGGAGTCTTCA 743
| |||||||||| ||| ||||| ||||| || || |||||| || || | || || ||
Sbjct 463 TCGTCTATGGAGCTCCA-GGTTCCTTCTATTCCAGACTCTTCTCC-CGCAATAGCCTCCA 520
Query 744 TTTCGTACATTCCTCTTATGGTCTCCATTGGCTCTCTAAGGTTCCTGAAGGGCTTGAGAA 803
| || |||||||||| |||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 521 TATCATACATTCCTCGTATGCCCTCCATTGGCTCTCTAAGGTTCCCGAAAAACTTGAGAA 580
Query 804 GAATAAGATGAGTGTGTACATCACAAATTCAAGTCCTCTAAGCACATACAAGGCTTACTT 863
|||||| || ||||||||| |||| ||||||||||| ||| ||||||| ||||||||
Sbjct 581 TAATAAGGGGAATGTGTACATAACAAGTTCAAGTCCTCAAAGTGCATACAAAGCTTACTT 640
Query 864 AAATCAATTCCAAAGAGATTT-TGCGACATTCCTTAAACTG-CGTTCTGAAGAGATGGTT 921
||||||||||||| |||||| | | | || || || | ||||||||||| || ||
Sbjct 641 GAATCAATTCCAAAAAGATTTCTCC-ATGTTTCT-AAGGTTACGTTCTGAAGAAATTGTC 698
Query 922 TCTAATGGACGCATGGTTCTCACTTTCATTGGTCGAAACACTATTGATA--ATCCATTGC 979
||||||||||| ||||||||||| ||||| || |||||||| | || | ||||||||
Sbjct 699 TCTAATGGACGTATGGTTCTCACCTTCATCGGGAGAAACACTCT-GA-ACGATCCATTGT 756
Query 980 ATAGAGATTGTTGTCACTTTTGGACATTATTATCCAAATCTCTTCGTGACCTAGTCGCCG 1039
|||||||||||||||||||||||||||| |||| |||||||| || |||||| || ||
Sbjct 757 ATAGAGATTGTTGTCACTTTTGGACATTGCTATCAAAATCTCTCCGCGACCTACTCTTCG 816
Query 1040 AGGGCCTTGTGAGTGCATCAAAGGTAGATTCATTCTACTTACCGTTTTATGACCCCAACG 1099
|||| |||||||||| ||||||| | ||| ||||| || | ||||||||||| || ||||
Sbjct 817 AGGGTCTTGTGAGTGAATCAAAGCTGGATGCATTCAACATGCCGTTTTATGATCCGAACG 876
Query 1100 AAAAAGAAAT-AAAGGAGATGGTACAGAAA-GAAGGTTCCTTTGAAATCAGA-GACTTGG 1156
| ||||| | ||| || || ||| |||| || || || |||||||||| | || ||||
Sbjct 877 TACAAGAACTCAAACAAG-TGATAC-GAAACGAGGGCTCTTTTGAAATCA-ATGAATTGG 933
Query 1157 AGACACATGGATAT-GATCTTGGCCATTGTAACCAAGACGAGTCAAAGA-GAAGTA--AA 1212
|||| ||||||| | |||||||| ||| ||||| | || || || || || || ||
Sbjct 934 AGACGCATGGAT-TCGATCTTGGTCATAGTAACTACGA--AG--AA-GATGAC-TATGAA 986
Query 1213 TCAGGGCAAAATGAAGCTAATTACATCAGAGCGGTGAGTGAACCACTGCTTGCGGCTCAC 1272
|||| || ||||||| |||| || ||||| || ||||||||| |||| | |||||
Sbjct 987 GCAGGACACGATGAAGCCAATTGTATAAGAGCTGTTAGTGAACCAATGCTCGTTGCTCAT 1046
Query 1273 TTTGGAGATGCCATTATCAACATATTGTTTAACAAGTTTGCATGTCATGTGTCTCAACAT 1332
|||||||| | ||||||| | | ||||| | |||| |||| |||||| |||| |||
Sbjct 1047 TTTGGAGAAGACATTATCGATACCTTGTTCGATAAGTATGCACACCATGTGACTCAGCAT 1106
Query 1333 GTTAGTTGCAGGAACAAAACGACCGTCAG-CATAGTCGTTTCACTGACTAAGaaa 1386
| | ||||||||||||||||| ||||| | | |||||||| |||||||||||
Sbjct 1107 GCCAACTGCAGGAACAAAACGACTGTCAGTCTT-GTCGTTTCGTTGACTAAGAAA 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5