BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04390.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939836 jgi|Araly1|939836|scaffold_600380.1 1628 0.0
Ahg478379 jgi|Araly1|478379|fgenesh2_kg.3__1080__AT3G10470.1 348 8e-95
> Ahg939836 jgi|Araly1|939836|scaffold_600380.1
Length=1129
Score = 1628 bits (881), Expect = 0.0
Identities = 1060/1141 (93%), Gaps = 34/1141 (3%)
Strand=Plus/Plus
Query 47 TGATCTTGAATCTCTTGCTAATGGAAGCGTTCGAAGAGGCCACAAAGGAGCAATCTTTGA 106
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TGATCTTGAATCTCTGGCTAATGGAAGCGTTCGAAGAGGCCACAAAGGAGCACTCTTTGA 60
Query 107 TCCTTAAAGGGAAGCGGACGAAGCGACAACGTCCACAATCTCCTATTCCTTTCTCTATCT 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCTTAAAGGGAAGCGGACGAAGCGACAACGTCCACAATCTCCTATTCCTTTCTCTATCT 120
Query 167 CCCCTCCTATAGTTTCTACCCCGGAAAACAACATGGAAGAAGAATACACTGATCTTGATT 226
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 121 CCCCTCCTATAGTTTCTTCCCCGGAACGTAACATGGAAGAAGAATTCACTGATCTTGATT 180
Query 227 CCAAGGACAATGCTTTAGGAAATGATGAGGGCAACCACAAAAAGGATGGTGTGATCACAT 286
|||||||||||||||| | | || |||||||||||||||||||||||||| |
Sbjct 181 CCAAGGACAATGCTTT-----A-G--GA----AACCACAAAAAGGATGGTGTGATCACGT 228
Query 287 CTTCATCTTCATCAGCCTCTTGGTCCTCCCAAAACAATCAC-ACATTGAAGGCAGCAGAA 345
|||||||||||||||||||||||||||| || ||||| | | | ||||||||| ||||||
Sbjct 229 CTTCATCTTCATCAGCCTCTTGGTCCTCTCACAACAA-CCCAATATTGAAGGCCGCAGAA 287
Query 346 GACGAGGAAGATCAAGACATAGCCAATTGTTTGATACTCCTTGCCCAAGGACACTCTCTT 405
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 288 GACGAGGAAGATCAAGACATAGCCAATTGTTTGATCCTCCTTGCCCAAGGACACTCTCTT 347
Query 406 CCCCACAACAATCACCACTTACCAAACAGCAACAACAACAAC-ACG--TATAGATTTACC 462
||| ||||||| |||||| || |||||| ||||| ||||||| ||| || |||||||||
Sbjct 348 CCCAACAACAACCACCACGTAACAAACAACAACAGCAACAACAACGCATACAGATTTACC 407
Query 463 AGCAGGAGGTTTCTAGAAACTTCTTCTTCTAACAGTGGTGGAAAAGCCGGTTACTACGTT 522
||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 408 AGCAGGAGGTTTCTAGAGACTTCTTCTTCAAACAGTGGTGGTAAAGCAGGTTACTACGTT 467
Query 523 TATCAGTGCAAGACATGTGACCGGACCTTCCCTTCTTTTCAGGCTTTAGGTGGCCACAGA 582
|||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||
Sbjct 468 TATCAGTGCAAGACATGTGACCGGACTTTTCCTTCTTTTCAAGCTTTAGGTGGCCATAGA 527
Query 583 GCTAGCCACAAGAAACCTAAAGCCGCCTCTTTTTACTCCAACCTTGACCTCAAGAAGAAC 642
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 528 GCTAGCCACAAGAAACCTAAAGCCGCCTCTTTTTACTCCAATCTTGACCTCAAGAAGAAC 587
Query 643 A-CGTATGCAAACGACGCCGTTTCACTTGTACACACAACCACAACTGTTT----T----- 692
| | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 588 ATC-TATGCAAACGACGCCGTTTCACTTGTACACACAACCACAACTGTTTACAATAACAA 646
Query 693 CAAGAACAATAACAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCA 752
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 647 CAAGAACAATAACAGTAGATCGCTTGTCGTGTACGGTAAGGCAAGTAACAATAAGGTTCA 706
Query 753 TGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TGAATGTGGAATCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAG 766
Query 813 ACGGCATAGAGGAGCTGTGGTTGTTCCGGCGGTGATAGCCCCCACCGTGACGGTGGCCAC 872
|||||| ||||| || |||||||| ||||||| | | |||||||||||||||||||||||
Sbjct 767 ACGGCACAGAGGCGCAGTGGTTGTCCCGGCGGCGGTTGCCCCCACCGTGACGGTGGCCAC 826
Query 873 GGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGACGG 932
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 827 CGCTGCGGCCAACACGGAGCTATCACTGTCTTCAATGTCGTTCGATCAAATATCGGACGG 886
Query 933 TCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGA---CGGTCGTGTCACT 989
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 887 TCA---GGATCATCTGGTGATGCCAGCGAAAAAGAAAGCTAGGAAGACGGTCGTGTCACT 943
Query 990 GGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAGCTT 1049
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 944 GGATTTGGATCTGAATCTACCCGCACCGGAAGATGAGAATCGGGTCAACGGATTCAGCTT 1003
Query 1050 TGCTTCAAAGCAAAATCACGAACAAGAACATCAACAGAAGAAGCAAAGAGAAGAACCAAA 1109
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1004 TGCTTCAAAACAAAATCACGAACAAGAACATCAACAGACGAAGCAAAGAGAAGAACCAAA 1063
Query 1110 GTCTCTTGTCTTGTCTGCTCCTACTTTGGTGGATTGCCACTACTGAATTTATTATTACAT 1169
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1064 GTCTCTTGTCTTGTCTGCTCCTACTTTAGTGGATTGCCACTACTGAATTTACTATTACAT 1123
Query 1170 C 1170
|
Sbjct 1124 C 1124
> Ahg478379 jgi|Araly1|478379|fgenesh2_kg.3__1080__AT3G10470.1
Length=1419
Score = 348 bits (188), Expect = 8e-95
Identities = 600/783 (77%), Gaps = 91/783 (12%)
Strand=Plus/Plus
Query 439 AACAACAACACGTATAGATTTACCAGCAGGAGGTTTCTAGA-A-A-CTTCTTCT--T--- 490
||||||||| ||||||||| || |||||||||||||||||| | | |||| ||| |
Sbjct 456 AACAACAACGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGG 515
Query 491 --C-TAAC--A--GTGGTGGA---AAAGCCGGTTACTACGTTTATCAGTGCAAGACATGT 540
| ||| | |||||||| ||||| |||||||| ||||| |||||||| ||||||
Sbjct 516 ACCACAACGAATGGTGGTGGAGGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGT 575
Query 541 GACCGGACCTTCCCTTCTTTTCAGGCT-TTAGGTGGCCACAGAGCTAGCCACAAGAAACC 599
|||||||| || || ||||| || ||| || || ||||| ||||| ||||||||||| ||
Sbjct 576 GACCGGACTTTTCCGTCTTTCCAAGCTCTT-GGCGGCCATAGAGCCAGCCACAAGAAGCC 634
Query 600 TAAAGCCGCCTC---TTTTTACTCCAACCTTGACCTCAAGAAGAACACGTATGC-A-AAC 654
|||||||||| | | || ||||||||| ||||| |||| | || | ||| | | |
Sbjct 635 TAAAGCCGCCACGGGTCTTCACTCCAACCATGACCACAAG-A-AA-TC-TAT-CTACGAT 689
Query 655 GACGCCGTTTCACT---TGTAC-AC-AC---A--ACCACAACTGTTTTCAAGAACAATAA 704
||||||||||| || | | | || || | ||||||||| | ||| || | |||
Sbjct 690 GACGCCGTTTCTCTCCATCT-CAACAACGTTATCACCACAACTCCTAACAACAATAGTAA 748
Query 705 -CAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCATGAATGTGGAA 763
|| |||||| ||||| | |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 749 CCA-TAGATCGCTTGTGGCATACGGTAAAGCTAGTAATAATAAGGTCCATGAATGTGGGA 807
Query 764 TCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAGACGGCATAGAG 823
| ||||||||||| || || ||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 808 TATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATGAGACGCCATAGAG 867
Query 824 GAGCTGTGGTTGTTCCG--GC-G--G--TGATAGCCCCCACCGTGA-CGG-TG--GCCA- 871
| || |||| || ||| || | | | || || |||| || | ||| || ||||
Sbjct 868 GTGCAGTGG-TG-GCCGCAGCAGCCGCCT-CTA-CCGCCACAGT-AGCGGTTGCAGCCAC 922
Query 872 -C-GGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGA 929
| |||| | || ||||||| | ||| |||| | |||||||| ||||| || |||||
Sbjct 923 TCAGGCTACTGCAAACACGGCTTTGTCATTGTCGCCTATGTCGTTTGATCAGATGTCGGA 982
Query 930 CGGTCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGA---CGGTCGTGTC 986
|||| | || | || ||| | || | | |||| ||| |||| |||| |||||
Sbjct 983 TGGTC--C-GG-T--TCAGGC--T-CC-G-G-TTAAGAGAGCAAGGAGCGCGGTTGTGTC 1030
Query 987 ACTGGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAG 1046
| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1031 GTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAACGGATTAAG 1090
Query 1047 CTTTGCTTCAAAGCAA-AATCACGAACAAGAACAT---CAA-CAGAA--GAAGCAA-AGA 1098
|||||||||||||||| || ||||||||||||||| ||| || || |||| || |||
Sbjct 1091 CTTTGCTTCAAAGCAAGAA-CACGAACAAGAACATGAACAAACACAACAGAAGAAACAGA 1149
Query 1099 GA-A-GAACCAAAGTCTCTTGTCTTGTC-TGC--TCCTACTTTGGTGGATTGCCACTACT 1153
|| | |||| |||||||||||||||||| | | |||||| |||||||||||||| ||||
Sbjct 1150 GAGAAGAACAAAAGTCTCTTGTCTTGTCATCCCCTCCTACATTGGTGGATTGCCATTACT 1209
Query 1154 GAA 1156
|||
Sbjct 1210 GAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5