BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04410.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939838 jgi|Araly1|939838|scaffold_600382.1 2892 0.0
Ahg478384 jgi|Araly1|478384|fgenesh2_kg.3__1085__AT3G10500.1 813 0.0
> Ahg939838 jgi|Araly1|939838|scaffold_600382.1
Length=1900
Score = 2892 bits (1566), Expect = 0.0
Identities = 1777/1877 (95%), Gaps = 21/1877 (1%)
Strand=Plus/Plus
Query 201 AAGTTCTGGTTTTCACCGATTGATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTT 260
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTTCTGG--TTCACCGATTGATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTT 58
Query 261 CCGTTTTCACCCGACGGATGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAA 320
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 59 CCGTTTTCACCCAACGGACGAGGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAA 118
Query 321 CAAACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGA 380
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 119 CAAACCCTTTAAGTTCGATGCTATTTCCGTCACCGACATATACAAATCCGAGCCTTGGGA 178
Query 381 TCTACCAGATAAGTCGAAGCTGAAAAGTAGAGACTTGGAATGGTACTTCTTTAGTATGCT 440
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 TCTACCGGATAAGTCTAAGCTGAAAAGTAGAGATTTGGAATGGTACTTCTTTAGTATGCT 238
Query 441 GGATAAGAAGTACAGTAATGGTTCCAAGACGAATCGTGCTACGGAGAAAGGGTATTGGAA 500
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 239 GGATAAGAAATACAGTAATGGTTCAAAGACGAATCGTGCGACGGAGAAAGGGTATTGGAA 298
Query 501 GACGACTGGGAAAGATCGGGAGATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGAC 560
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GACGACTGGCAAGGATCGGGAGATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGAC 358
Query 561 ACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGA 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 ACTTGTTTATCACAAGGGTCGAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCACGA 418
Query 621 GTATCGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCACAAGAAGCATATGTGTT 680
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 GTATAGGCTTTCTGATGAGGACTTGAAGAAAGCTGGTGTGCCGCAAGAAGCATATGTGTT 478
Query 681 ATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAATGGGGAGCAGTATGGTGCTCC 740
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 ATGTAGGATATTCCAGAAAAGTGGTACGGGTCCTAAGAATGGGGAGCAGTACGGTGCTCC 538
Query 741 -TTATCTTGAGGAGGAGTGGGAAGAAGATGGAATGACTTATGTACCTGCTCAAGATGCTT 799
|| |||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||
Sbjct 539 GTT-TCTTGAGGAGGAGTGGGAAGAAGATGCAATGACTTATGTACCAGATCAAGATTCTT 597
Query 800 TCAGTGAAGGATTGGCT-TTGAATGATGATGTTTATGTCGATATTGATGACATTGACGAG 858
||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 598 TCAGTGAAGGATTGGCTGTTGA-TGATGATGTTTATGTTGATATTGATGACATTGACGAG 656
Query 859 AAGCCCGAAAATCTGGTGGTCTATGATGCCGTTCCTATTCTACCTAACTATTGTCATGGG 918
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 657 AAGCCCGAGAATCTGGTGGTCTATGATGCCGTTCCAATTCTACCTAACTACTGTCATGGA 716
Query 919 GAATCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCA 978
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAATCCAGCAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCA 776
Query 979 GGAAACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACCAATTGAAACTTTTGAGGAA 1038
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 777 GGAAACTACGTTGTCGACTCTGGTGGCTACTTTGAACAACCAATTGAAACTTTTGAGGAA 836
Query 1039 GATCGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAA 1098
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 837 GATCAGAAGCCTATCATACGGGATGGTAGCATTCAGCCTTGTTCTCTGTTTCCAGAGGAA 896
Query 1099 CAAATTGGCTGTGGTGTGCAAGACGAAAATGTGGTGAATCTGGAATCTTCCAACAATAAT 1158
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 897 CAAATTGGCTGTGGTGTGCAAGACGAGAATGCAGTGAATCTGGAATCTTCCAACAATAAT 956
Query 1159 GTGTTTGTAGCTGATACATGCTACAGTGACATTCCTATTGAT-CATAACTATTTACCCGA 1217
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 957 GTGTTTGTGGCTGATACATGCTACAGTGACATTCCTATTGATAC-TAACTATTTGCCCGA 1015
Query 1218 TGAGCCATTCATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAAC 1277
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGAGCCATTTATGGATCCTAACAACAATCTTCCACTCAACGATGGTCTGTACCTGGAAAC 1075
Query 1278 GAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGAAGATTATCTCAGCTTCTT 1337
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1076 GAATGATCTCAGCTGTGCTCAGCAAGATGATTTTAACTTCGAAGATTATCTCAACTTCTT 1135
Query 1338 TGATGATGAGGGTTTGACTTTTGACGATTCTCTATTAATGGGACCTGAAGATTTTCTTCC 1397
|||||||||| |||| ||| |||| ||||||| ||||||||||||||||||| ||||||
Sbjct 1136 TGATGATGAGAGTTTCACTCTTGATGATTCTCAATTAATGGGACCTGAAGATGCTCTTCC 1195
Query 1398 CAACCAAGAAGCCCTTGACCAGAAACCTGCCCCTAAAGAATTGGAGAAGGAGGTCGCAGG 1457
||||| ||||| |||||| ||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1196 CAACCTAGAAGGCCTTGATCAGAAACCTACCCCTGAAGAACTGGAGAAGGAGGTCGCAGG 1255
Query 1458 AGGCAAAGAGGCAGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCTTCAAAACAAGATAC 1517
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1256 AGGCAAAGAGGCGGTGGAGGAAAAGGAAAGTGGCGAAGGATCTTCATCAAAACAAGATGC 1315
Query 1518 AGATTTCAAGGACTTTGATTCAGCTCCGAAGTACCCATTTCTCAAAAAGACGAGCCACAT 1577
|||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||
Sbjct 1316 AGATGTCAAGGACTTTGATTCAGCTTCGAAGTACCCTTTTCTCAAGAAGACAAGCCACAT 1375
Query 1578 GCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTTCCAAACAAAGGACGC--- 1634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GCTTGGAGCCATTCCTACTCCATCTTCATTTGCTTCACAGTTCCAAACAAAGGACGCTGC 1435
Query 1635 AATGCGTCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAG 1694
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1436 AATGCGGCTACACGCAGCACAATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATCAG 1495
Query 1695 AATATCAAACATGACTCTAGCAGCGGACAGCGGTATGGGCTGGTCATATGACAAGAACGG 1754
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AATATCAAACTTGACTCTAGCAGCGGACAGCGGTATGGGCTGGTCATATGACAAGAACGG 1555
Query 1755 TAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACAGGATGATGCGATGACTGCCTC 1814
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||
Sbjct 1556 TAACCTCAACGTAGTCCTTTCATTCGGGGTAGTCCAACGGGATGATGCGCTGAGTGCCTC 1615
Query 1815 GGGAAGCAAGACAGGAATTACGGCGACAAGAGCTATGTTAGTCTTCATGTGTTTATGGGT 1874
|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1616 GGGAAGCAAGACAGAAACTACGGCGACTAGAGCTATGTTAGTCTTCATGTGTTTATGGGT 1675
Query 1875 TCTCCTACTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGCTCGGTAATAGGATCA 1934
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1676 TCTCCTATTCTCTGTTAGCTTCAAAATAGTAACCATGGTGTCTGCTCGGTAATAGGACCA 1735
Query 1935 AA-GTTGAATCGTCTCAAA--GACtttttttGGTGTTTGTACCTCTCCAA-TCATATAGC 1990
|| || ||||||||||||| |||||||| ||||||||||||||||||| | |||||||
Sbjct 1736 AAAGTCGAATCGTCTCAAAAAGACTTTTT--GGTGTTTGTACCTCTCCAACT-ATATAGC 1792
Query 1991 CTTTAACTTTGGCAGTGCTTTGCTGCTCAATATTTAAATTTTTATT-CGAAGGGTTTGGT 2049
||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||| ||
Sbjct 1793 CTTTA-CTTTGGCAGTGCTTTGCTGCTCCATATTTAAATTTTTATTTCTAAGGGTTTTGT 1851
Query 2050 GTAGCTTGAA-TTCTCT 2065
|||| ||||| ||||||
Sbjct 1852 GTAGTTTGAAATTCTCT 1868
> Ahg478384 jgi|Araly1|478384|fgenesh2_kg.3__1085__AT3G10500.1
Length=1862
Score = 813 bits (440), Expect = 0.0
Identities = 1202/1551 (77%), Gaps = 127/1551 (8%)
Strand=Plus/Plus
Query 223 ATGGGTCGTGGCTCAGTGACGTCGCTTGCTCCTGGGTTCCGTTTTCA-CCCGACGGATGA 281
|||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||| ||
Sbjct 71 ATGGGTCGTGGCTCAGTGACGTCGCTCGCTCCTGGGTTCCGCTTTCATCCC-ACGGACGA 129
Query 282 GGAACTTGTTCGCTACTACCTTAAGCGTAAGGTCTGCAACAAACCCTTTAAGTTCGATGC 341
||||| ||||| ||||||||||| || ||| ||||||| |||||||||||||| |||||
Sbjct 130 AGAACTCGTTCGTTACTACCTTAAACGCAAGATCTGCAATAAACCCTTTAAGTTTGATGC 189
Query 342 TATTTCCGTCACCGACATATACAAGTCTGAGCCTTGGGATCTACCAGATAAGTCGAAGCT 401
||| || || ||||| ||||||| || ||||| |||||||| ||||| |||||||||||
Sbjct 190 TATCTCTGTTACCGATGTATACAAATCCGAGCCGTGGGATCTCCCAGACAAGTCGAAGCT 249
Query 402 GAAAAGTAGAGACTTGGAATGGTACTTCTTTAGTATGCTGGATAAGAAGTACAGTAATGG 461
|||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||
Sbjct 250 GAAAAGTAGAGACTTGGAGTGGTACTTCTTCAGTATGCTTGATAAGAAGTATAGAAATGG 309
Query 462 TTCCAAGACGAATCGTGCTACGGAGAAAGGG-TATTGGAAGACGACTGGGAAAGATCGGG 520
|| |||||||||||||| || |||| ||| ||||||||||| || ||||||||||| |
Sbjct 310 ATCGAAGACGAATCGTGCCACTGAGAT-GGGATATTGGAAGACCACAGGGAAAGATCGAG 368
Query 521 AGATTCGTAATGGTTCAAGAGTCGTTGGGATGAAGAAGACACTTGTTTATCACAAGGGTC 580
|||||| |||||| |||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 369 AGATTCTTAATGGCTCAAAAGTCGTTGGGATGAAGAAGACTCTTGTTTATCACAAAGGTA 428
Query 581 GAGCTCCTCGTGGTGAAAGGACCAATTGGGTTATGCATGAGTATCGGCTTTCTG-ATGAG 639
||||||||||||| |||| |||||||||||||||||||||||||| ||| | ||||
Sbjct 429 GAGCTCCTCGTGGCCAAAGAACCAATTGGGTTATGCATGAGTATCG-CTTGGTTCATGAA 487
Query 640 GAC-TTGA-AGAAAGCTGGTGTGCCAC-AAGAAGCATATGTG-TTATGTAGGATATTCCA 695
||| |||| | ||| | ||||| | || |||| || | |||| || |||||||| || ||
Sbjct 488 GACCTTGATA-AAACC-GGTGTTC-ACCAAGATGCGTTTGTGCTT-TGTAGGATTTTTCA 543
Query 696 GAAAAGTGG-TACGGGTCCTAAGAATGGGGAGCAGTATGGTGCTCC-TTATCTTGAGGAG 753
||| ||||| | |||| ||||| ||||| ||||||||||||||||| || | |||||||
Sbjct 544 GAAGAGTGGGT-CGGGACCTAAAAATGGAGAGCAGTATGGTGCTCCATT-TGTTGAGGAA 601
Query 754 GAGTGGGAAGA--AG-ATGGA-ATGAC-TTATGTACCTGCTCAAGATGCT-TTCAGTGAA 807
||| |||| || || ||| | ||||| || ||||||| |||||| | | || | |||
Sbjct 602 GAGGGGGAGGAGGAGGATG-ATATGACATT-TGTACCTAATCAAGAAGATCTT--G-GAA 656
Query 808 GGATTGGCTTTGAATGATGATGTTTATGTCGATATTGATGACATTGA-CGAGAAGCCCGA 866
| | | || ||| |||||||||||||||| ||||||||||| | ||||| | ||
Sbjct 657 G--T---C----AA-GATCATGTTTATGTCGATATGGATGACATTGATC-AGAAGTCTGA 705
Query 867 AAA-TCTGGTGGTCTATGATGCCGTTCCTATTCTACC-T-AA-CTATTGT-CATGGGGAA 921
||| | || |||||||||||||| ||||||| | || | || || || | || |||||
Sbjct 706 AAACTTTG-TGGTCTATGATGCCATTCCTAT-C--CCGTTAAACT-TTATTCACGGGGAG 760
Query 922 TCAAGTAACAATGTTGAATCAGGCAATTACTCAGACTCTGGAAATTACATTCAACCAGGA 981
|| || || ||||||||| || || ||||||||||| | ||| || || |||||||||
Sbjct 761 TCGAGCAATAATGTTGAAACA---AACTACTCAGACTCCGTAAACTATATACAACCAGGA 817
Query 982 AACAATGTTGTCGACTCTGGTGGGTACTTTGAACAACCAATTGAAACTTTTGAGGAAGAT 1041
||| |||| | || |||||||| |||||||| |||||| ||| ||| |||| |||||
Sbjct 818 AACTATGT-G--GATTCTGGTGGCTACTTTGAGCAACCAGCAGAATCTTATGAGAAAGAT 874
Query 1042 CGGAAGCCTATTATACGGGAGGGTAGCATTCAGCCTTGTTCTC-TG-TTTCCAGAGGAAC 1099
| |||||||||||| || || |||| | |||| | | | | | |||| |||||||
Sbjct 875 CAGAAGCCTATTATTCGTGATGGTAACCTTCAAAAT-GA-CGCATTCTTTCAAGAGGAAG 932
Query 1100 AAATTGGCTGTGGTGTGCAAGACGAAAATGTGGTGAA-TCTGGAATCTTCC-AACAATAA 1157
|||||||||||||||| || || || | | || | || |||||| || || |
Sbjct 933 AAATTGGCTGTGGTGTCCAGGATGAGCACACC-TCAAATTTGCTATCTTCTGAA-AACA- 989
Query 1158 TGTGTTTGTAGCTGATACAT---GCTACAGTGACATTCCTA-TTGATCAT-AACTATTT- 1211
| | || | | ||||||||| |||||| ||| |||| | |||| | ||||| ||
Sbjct 990 TCT-TTGGGA-CTGATACATCATGCTACAATGATTTTCC-AGTTGAG-AGCAACTACTTG 1045
Query 1212 ACCCGATGAGCCATT-CATGGATCCTAATAACAATCTTCCACTCAACGATGGTCTGTACC 1270
|| | |||| | || | ||||||| || | ||||||| | || |||||||||||||
Sbjct 1046 ACTGG-TGAGGCGTTTC-TGGATCCGAACAGTAATCTTCTGCAGAATGATGGTCTGTACC 1103
Query 1271 TGGAAACGAATGATCTCAGCTGTGCTCAACAAGATGATTTTAACTTCGAAGATTATCTCA 1330
||||||| |||||||||||| || | || ||||||| ||| |||| ||||||||||| |
Sbjct 1104 TGGAAACAAATGATCTCAGCAGTACCCAGCAAGATGGTTTCGACTTTGAAGATTATCTTA 1163
Query 1331 GCTTCTTTGATGA------TGAG-G-G-T------TTGACTTTTGA-CGATTCTCTATTA 1374
|||||||||||| |||| | | | ||||||||||| | ||||| | |
Sbjct 1164 CCTTCTTTGATGAGGACGATGAGAGTGCTCAAAACTTGACTTTTGATCC-TTCTCAACTG 1222
Query 1375 ATGGGACCTGAAGAT-TTTCTTCCCAACCAAGAAGC-C-CTTGACCA-GAAACCTGCCCC 1430
|||||| ||||||| ||| || | | ||||||| | ||| ||| || | | |
Sbjct 1223 ATGGGAAATGAAGATATTT-TTGTCGATCAAGAAGAGCTCTT--CCAAGAGGTC-GAGAC 1278
Query 1431 TAAAGAATTGGAGAAGGAGGT--CG-CAGGAGGCAAAGAGGCAGTGGAGGAAAAGGAAAG 1487
||| ||| | |||| |||| || ||||| ||||| | | || || ||||||||||
Sbjct 1279 TAAGGAACTAAAGAAAGAGGAGACGTCAGGAAGCAAACATGTGGTTGAAGAAAAGGAAAA 1338
Query 1488 TGGC-GAAGGATCTT-CTTCAAAACAAGAT-A--CAGATTTCAAG-GACTTTGATTCAGC 1541
|| |||| ||||| || ||||||||| | | ||||| ||| || ||||| |||
Sbjct 1339 -GGATGAAGCATCTTGCT-CAAAACAAGTTGATGCAGATG-CAACAGAGTTTGAGCCAGA 1395
Query 1542 TC-CGAAGTACCCATTTCTCAAAAAGACGAGCCACATGCTTGGA-GCCATTCCTACTCCA 1599
| | |||||||| || ||||| ||| | ||||||||| |||| || |||||| ||||
Sbjct 1396 TTAC-AAGTACCCGTTCCTCAAGAAGGCAAGCCACATG-TTGGCCGCTATTCCTGCTCCG 1453
Query 1600 TCTTCATTTGCTTCACAGTT-CCAAACAAAGGACGCA---ATGCG-TCTACACGCAGCAC 1654
|| |||||||||| |||| || | ||||||| ||| || || | ||||||||||||
Sbjct 1454 CCTGCATTTGCTTCTGAGTTGCCTA-CAAAGGATGCAGCTATCCGGT-TACACGCAGCAC 1511
Query 1655 AATCTTCTGGTTCAGTTCACGTGACTGCAGGTATGATGAGAATATCAAACA 1705
|||| || ||||||||||| || || ||||||||||| | ||||||| |||
Sbjct 1512 AATCATCAGGTTCAGTTCATGTAACCGCAGGTATGATCACAATATCAGACA 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5