BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04420.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487223 jgi|Araly1|487223|fgenesh2_kg.6__357__AT5G04420.3 2784 0.0
Ahg335696 jgi|Araly1|335696|fgenesh1_pg.C_scaffold_1002261 702 0.0
Ahg913964 jgi|Araly1|913964|Al_scaffold_0001_4218 697 0.0
> Ahg487223 jgi|Araly1|487223|fgenesh2_kg.6__357__AT5G04420.3
Length=2206
Score = 2784 bits (1507), Expect = 0.0
Identities = 1745/1855 (94%), Gaps = 36/1855 (2%)
Strand=Plus/Plus
Query 189 AGTGAAGCTGTGACGTGGTCTCTCTGGTAATGGAAGAGATCAGGAAAGAAATAGATGTCG 248
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |
Sbjct 367 AGTGAAGCTGTGACGTAGTCT-T-TGGTAATGGAAGAGATCAGGAAAGAAATAGATGTTG 424
Query 249 GTGATTGGCATTCAAATCTAGCTCACGATGAATGGACACCACTCCCTGTTTCTGGCTCTC 308
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GTGATTGGCATTCAAATCTCGCTCACGATGAATGGACACCACTCCCTGTTTCTGGCTCTC 484
Query 309 GAGCATCAGCTCGTTACAAGCATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTG 368
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GAGCATCAGCTCGCTACAAGCATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTG 544
Query 369 GTGGAAGCCGGAATGGCCGATACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGA 428
|||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 545 GTGGAAGCCGTAATGGCCGATATTTATCTGATGTCCAGGTGTTTGATCTTACAAGTTTGA 604
Query 429 CTTGGTCTAGTTTGAAACTGAAAACTGAATCATCAAGTGCTGATAACATTCAAGAGGATG 488
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 605 CTTGGTCTAGTTTGAAACTGATAACTGAATCATCAAGTGCTGAGAACATTCAAGAGGATG 664
Query 489 ATGGTAGCAGCTTACGGGAAGCTTTTCCTGCTATTTCAGACCATCGCATGATTAAGTGGG 548
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 ATGGTAGCAGCTTAAGGGAAGCTTTTCCTGCTATTTCAGACCACCGCATGATTAAGTGGG 724
Query 549 GAAACAAGCTTCTTTTGATCGGGGGACACTCCAAGAAGTCATCAGATAACATGTT-AGTG 607
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 725 GAAACAAGCTTCTTTTGATCGGGGGACACTCCAAGAAGTCATCAGATAACAT-TTCAGTG 783
Query 608 CGGTTCATTGATTTGGAAACACATTCATGTGGAGTCATTGATGTGTTTGGGAATGTTCCG 667
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct 784 CGGTTCATTGATTTGGAAACACATTTATGTGGAGTCTTTGATGTGTCTGGGAATGTTCCG 843
Query 668 GCTTCACGTGGTGGACATTCCATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GCTTCACGTGGTGGACATTCCATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGG 903
Query 728 GAAGATAAGAACAGGAGACTGCTGAATGATCTGCATGTTCTTCATCTTGAGACAATGACT 787
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 904 GAAGATAAGAACAGGAGACTGCTGAATGATCTGCATGTTCTTGATCTTGAGACAATGACT 963
Query 788 TGGGATGTTGTAGAGACAAAGCAGACACGCCCAGTTCCCAGATTTGATCACACAGCTGCC 847
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 964 TGGGATGTTGTAGAGACAAAGCAGACACGCCCAGTTCCCAGATTTGACCACACAGCTGCC 1023
Query 848 ACACATTCTGATCGCTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATTTTCTACAGT 907
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1024 ACACATTCCGATCGTTACCTCTTGATTTTTGGTGGTTGTTCTCATTCGATCTTCTACAGT 1083
Query 908 GATCTTCATATCCTTGACTTGCAAACAATGGAGTGGTCACAGCCTCATGTTCAGGGAGAT 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GATCTTCATATCCTTGACTTGCAAACAATGGAGTGGTCACAGCCTCATGTTCAGGGAGAT 1143
Query 968 GTTGTAACTCCTCGGGCAGGACACGCTGGAATCACCATTGACGAAAACTGGTATATAGTT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GTTGTAACTCCTCGGGCAGGACACGCTGGAATCACCATTGACGAAAACTGGTATATAGTT 1203
Query 1028 GGGGGCGGTGATAACAGTACTGGTTGTTTAGAGACCCTTGTTCTAAATATGTCAAAGCTG 1087
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GGGGGTGGTGATAACAGTACTGGTTGTTTAGAGACCCTTGTTCTAAATATGTCAAAGCTG 1263
Query 1088 GTTTGGTCTACATCAACCCATGTAGAAGCAAGACATCCACTTGCTAGTGAGGGTCTCAGT 1147
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GTTTGGTCCACATCAACCCATGTAGAAGCAAGACATCCACTTGCTAGTGAGGGTCTCAGT 1323
Query 1148 GTATGTTCAGCATCAGTATTTGGAGAGAACATCTTAGTAGCTTTTGGCGGCTATAACGGG 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1324 GTATGTTCAGCATCAGTATTTGGAGAGAACATCTTAGTAGCTTTTGGCGGCTATAATGGG 1383
Query 1208 AAGTATAACAATGATATATTTGTCATGAGGCTAAAACCAGGAGAATCCTCACATCCCAAA 1267
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1384 AAGTATAACAATGATATATATGTCATGAGACTAAAACCAGGAGAATCCTCACATCCCAAA 1443
Query 1268 ATCTTTAAGTCACCAGCAGCCGCTGCAGCTGCAGCCTCTGTCACTGCTGCTTATGCCATA 1327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ATCTTTAAGTCACCAGCAGCCGCTGCAGCTGCAGCCTCTGTCACTGCTGCTTATGCCATA 1503
Query 1328 GCCAAGTCAGATAAGTCAGATTATCCTCCACCTGCAAATCCAACTCTCAATGGAA-ATGG 1386
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1504 GCCAAGTCAGATAAGTCAGATTATCCACCACCTGCAAATCCAACTCTCAATGGAATA-GG 1562
Query 1387 AAACAGTCTTCCTGAGAGAGATATTAGGAACAGAATCGATACCATTAAAGAAGAAAAAAG 1446
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1563 AAGCAGTCTTCCTGAGAGAGATATTAGGAATAGAATCGATACCATTAAAGAAGAAAAAAG 1622
Query 1447 AGCATTGGAGTCATCTATTGCGGAAACTCAAGTAGAAAACGCGAAGCTCAGGGAAAAGAT 1506
| | ||||| || ||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1623 ATCGTTGGAATCCTCTGTTGCGGAAACCCAAGTAGAAAATGCGAAGCTCAGGGAAAAGAT 1682
Query 1507 AGATGAAGTCAATAGTAGCCACACTGAGCTATCTCAAGAACTCCAATCTGTAGAAGGTCA 1566
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1683 AGATGAAGTCAATAGCAGCCACACTGAGCTATCTCAAGAACTACAATCTGTAGAAGGTCA 1742
Query 1567 ACTTATTTCAGAACGGTCTAGATGCTTTAAACTCGAGGCACAAATAGCAGAATTGCAGAA 1626
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 ACTTATTTCAGAACGATCAAGATGCTTTAAACTCGAGGCACAAATAGCAGAATTGCAGAA 1802
Query 1627 AGCACTGGAGTCAGGGCAATCCATCGAAGCTGAAGTTGAGATGCTTAGAAGACAGAGGTC 1686
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1803 AGCATTGGAGTCAGGGCAATCTATCGAAGCTGAAGTTGAGATGCTTAGAAGGCAGAGGTC 1862
Query 1687 AGCGTCTGATGAAGAAGAAGACGGGACTGTGCAAAGGCAAGGCTCTGCTGGTGTGTGGGG 1746
|| |||||||||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1863 AGTATCTGATGAAGGAGAAGATGGGACTGTGCAAAGGCAAGGCTCTGGGGGTGTGTGGGG 1922
Query 1747 TTTGTTTGGAAGGTAAATCCCAAACAGTTTGGCGACACAAATACCTATAAGCTCTGACGA 1806
|||||||||||||||||||| ||||| |||||| ||||||| || || ||||| ||| ||
Sbjct 1923 TTTGTTTGGAAGGTAAATCCTAAACAATTTGGCTACACAAACACTTA-AAGCTTTGAAGA 1981
Query 1807 AACAAACATTGGTTTATAATTCCAtttttttGAGAATGAGAGATAGAGTGGGGGAAACAT 1866
||||||||||||||||||||| |||||| ||||||||||| | | | | || ||
Sbjct 1982 TACAAACATTGGTTTATAATTCTATTTTT--GAGAATGAGAG-T-G-G-GAT--AAGGAT 2033
Query 1867 GTTCTT-CTTTATTTGTTCTCAAAGATTCAAAATCAATTTG-TT----ATGAATGCTTTT 1920
|||||| ||| ||| || | |||||||||||||||||||| || ||||||||||||
Sbjct 2034 GTTCTTTCTTG-TTTATTATGAAAGATTCAAAATCAATTTGCTTGTTTATGAATGCTTTT 2092
Query 1921 T---T------CCCTC---ATTTACTAGAGATTTTACAACGAAATATCATTTCACAATG- 1967
| | ||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 2093 TGAGTTTTTTTCCCTCCTTATTTACTGGAGATTTTACAACGAAATATCATTTCACTTTAC 2152
Query 1968 TAACATGTTTAGACCAATGATTCCAACAATAACGGGATCAAATAATAATTGTCAT 2022
||| ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||
Sbjct 2153 TAATATGTTTA-ACCAAAGTTTCAAACAATAACAGGATCAAATAACAATTGTCAT 2206
> Ahg335696 jgi|Araly1|335696|fgenesh1_pg.C_scaffold_1002261
Length=480
Score = 702 bits (380), Expect = 0.0
Identities = 406/419 (97%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 329 CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGGAATGGCCGA 388
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 46 CATGCGGCAGTGGTTGTTGATGAGAAGCTCTACATTGTTGGTGGAAGCCGTAATGGCCGA 105
Query 389 TACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTG 448
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 106 TACTTATCTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCGAGTTTGAAACTG 165
Query 449 AAAACTGAATCATCAAGTGCTGATAACATTCAAGAGGATGATGGTAGCAGCTTACGGGAA 508
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||
Sbjct 166 AAAACTGAATCATCAAGTACTGAGAACATTCAAGAGGATGATGGTAGCAGTTTACGGGAA 225
Query 509 GCTTTTCCTGCTATTTCAGACCATCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATC 568
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 226 GCTTTTCCTGCTATTTCAGACCACCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATT 285
Query 569 GGGGGACACTCCAAGAAGTCATCAGATAACATGTTAGTGCGGTTCATTGATTTGGAAACA 628
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 286 GGGGGACACTCCAAGAAGTCATCAGATAACATGTCAGTGCGGTTCATTGATTTGGAAACA 345
Query 629 CATTCATGTGGAGTCATTGATGTGTTTGGGAATGTTCCGGCTTCACGTGGTGGACATTCC 688
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 346 CATTTATGTGGAGTCATTGATGTGTCTGGGAATGTTCTGGCTTCACGTGGTGGACATTCC 405
Query 689 ATTACACTGGTTGGATCCCGAGTTCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT 747
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 406 ATTACACTGGTTGGATCCCGAGTGCTTGTTTTTGGTGGGGAAGATAAGAACATGAGACT 464
> Ahg913964 jgi|Araly1|913964|Al_scaffold_0001_4218
Length=534
Score = 697 bits (377), Expect = 0.0
Identities = 483/532 (91%), Gaps = 16/532 (3%)
Strand=Plus/Plus
Query 218 ATGGAAGAGATCAGGAAAGAAATAGATGTCGGTGATTGGCATTCAAATCTAGCTCACGAT 277
|||||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAGACATCAGGAAAGAAATAGATTTTGGTGATTGGCATTCAAATCTCGCTCACGAT 60
Query 278 GAATGGACACCACTCCCTGTTTCTGGCTCTCGAGCATCAGCTCGTTACAAGCATGCGGCA 337
||||||||||||||||||||||| ||||| | |||||||||||| | | || |
Sbjct 61 GAATGGACACCACTCCCTGTTTCCGGCTCACCAGCATCAGCTCG---CTA-CA------A 110
Query 338 GTGGTTGTTGATGAGAAGCTCTACAT-TGTT-GGTGGAAGCCGGAATGGCCGATACTTAT 395
|| || | | | || || | | | |||| ||||||||| ||||||||||||||||
Sbjct 111 GT--TTCTCCCT-A-AACCTTTTCGTGTGTTCTCTGGAAGCCGTAATGGCCGATACTTAT 166
Query 396 CTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCTAGTTTGAAACTGAAAACTG 455
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 167 CTGATGTCCAGGTGTTTGATCTTAGAAGTTTGACTTGGTCGAGTTTGAAACTGAAAACTG 226
Query 456 AATCATCAAGTGCTGATAACATTCAAGAGGATGATGGTAGCAGCTTACGGGAAGCTTTTC 515
||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 227 AATCATCAAGTACTGAGAACATTCAAGAGGATGATGGTAGCAGTTTACGGGAAGCTTTTT 286
Query 516 CTGCTATTTCAGACCATCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATCGGGGGAC 575
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 287 CTGCTATTTCAGACCACCGCATGATTAAGTGGGGAAACAAGCTTCTTTTGATTGGGGGAC 346
Query 576 ACTCCAAGAAGTCATCAGATAACATGTTAGTGCGGTTCATTGATTTGGAAACACATTCAT 635
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||
Sbjct 347 ACTCCAAGAAGTCATCAGATAACATGTCAGTGTGGTTCATTGATTTGGAAACACATTTAT 406
Query 636 GTGGAGTCATTGATGTGTTTGGGAATGTTCCGGCTTCACGTGGTGGACATTCCATTACAC 695
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 407 GTGGAGTCATTGATGTGTCTGGGAATGTTCCAGCTTCACGTGGTGGACATTCCATTACAC 466
Query 696 TGGTTGGATCCCGAGTTCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT 747
||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 467 TGGTTGGATCCGGAGTGCTTGTTTTTGGTGGGGAAGATAAGAACAGGAGACT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5