BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04430.2
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487225 jgi|Araly1|487225|fgenesh2_kg.6__359__AT5G04430.2 2503 0.0
> Ahg487225 jgi|Araly1|487225|fgenesh2_kg.6__359__AT5G04430.2
Length=1550
Score = 2503 bits (1355), Expect = 0.0
Identities = 1499/1564 (96%), Gaps = 27/1564 (2%)
Strand=Plus/Plus
Query 1 AAGGGAGGCTAGTGGATAGATAGACGAAGGACACCAGAGCCACCTTCATTCACTTCACAA 60
||||||| ||||||||||||||||||||||||||||||| | || | ||||||||
Sbjct 1 AAGGGAGCCTAGTGGATAGATAGACGAAGGACACCAGAG----C--CA--C-CTTCACAA 51
Query 61 ACCGCTCGGCGACAAAGACGAAGAAGCCGAGGAAGCACCGA--TACGACGATTGAGACTT 118
||||||||||||||||||||||||||||||||||| | ||| ||||||| | ||||||
Sbjct 52 ACCGCTCGGCGACAAAGACGAAGAAGCCGAGGAAGTAACGAGCGACGACGA-T-AGACTT 109
Query 119 AGTTTTGCTCAGATTCATTTAACCACCGGCGCC-A---A--GTGACGACGACGACGGAGG 172
||||||||||||||||| || ||||||||||| | | | ||||||||||||||| |
Sbjct 110 AGTTTTGCTCAGATTCA--TATCCACCGGCGCCAATTGACGGCGACGACGACGACGGAAG 167
Query 173 GAGCAGATTCGAATTGTGTGAAGACAGCAATGGAGTCTACTGAGTCATATGCGGCAGGTT 232
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAGCAGATTCGAATTGTGCGAAGACAGCAATGGAGTCTACTGAGTCATATGCGGCAGGTT 227
Query 233 CACCGGAAGAGCTGGCTAAGAGATCCCCTGAACCGCATGATTCTTCCGAAGCTGATTCTG 292
|||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 228 CACCGGAAGAGCTGGCGAAGAGATCCCCAGAACCGCACGATTCTTCAGAAGCTGATTCTG 287
Query 293 CTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CTGAGAAGCCAACACACATTCGGTTTCTTGTATCCAATGCGGCAGCTGGTTCCGTCATTG 347
Query 353 GGAAAGGTGGCTCGACCATCACTGAATTTCAGGCAAAGTCTGGGGCAAGGATTCAGCTTT 412
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 348 GGAAAGGTGGCTCGACCATCACTGAATTTCAGGCAAAGTCCGGGGCAAGGATTCAGCTTT 407
Query 413 CACGTAATCAAGAGTTTTTCCCGGGGACGACTGACAGAATTATTATGATATCGGGATCAA 472
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 408 CACGTAATCAAGAGTTTTTCCCGGGGACGACCGATAGAATTATTATGATATCGGGCTCAA 467
Query 473 TCAAAGAAGTTGTCAATGGACTGGAACTTATCCTTGATAAATTGCACAGTGAGCTTCATG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TCAAAGAAGTTGTCAATGGACTGGAACTTATCCTTGATAAATTGCACAGTGAGCTTCATG 527
Query 533 CTGAAGATGGTAATGAGGTTGAGCCTAGGAGAAGAATTAGACTTGTGGTTCCTAACAGTT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CTGAAGATGGTAATGAGGTTGAGCCTAGGAGAAGAATTAGACTTGTGGTTCCTAACAGTT 587
Query 593 CTTGTGGAGGTATAATCGGAAAAGGAGGGGCCACCATCAAGTCATTCATTGAGGAATCTA 652
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CTTGTGGAGGTATAATTGGAAAAGGAGGGGCCACCATCAAGTCATTCATTGAGGAATCTA 647
Query 653 AAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTTTATGGGTTGAGCGATAGGTTAG 712
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 648 AAGCTGGTATTAAGATATCCCCTCTGGATAATACCTTCTACGGGTTGAGCGATAGGTTAG 707
Query 713 TGACATTATCTGGGACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGC 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGACATTATCTGGGACCTTCGAGGAGCAGATGCGGGCAATCGATTTGATTTTGGCTAAGC 767
Query 773 TTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGGTCTTT 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTACTGAGGACGATCATTACTCCCAGAATGTGCATTCCCCATATTCATATGCAGGTCTTT 827
Query 833 TCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCTACTCTGGTTTTCATGGTCCTCCATATGCGTATGCGCTTCCTTCTGTTGCAACAGCGG 887
Query 893 GATACAATTCGGTTAACTACGCACCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGG 952
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 888 GATACAATTCAGTTAACTACGCGCCCAACGGTTCTGGAGGCAAGTATCAAAACCACAAGG 947
Query 953 AAGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGATTGGTGCTTG 1012
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 948 ACGAAGCTAGTACCACGGTGACAATTGGTGTTGCGGATGAGCATATAGGATTGGTCCTTG 1007
Query 1013 GACGTGGAGGAAGAAACATCATGGAAATCACTCAGATGACTGGTGCCCGAATTAAAATAT 1072
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1008 GACGTGGAGGAAGAAACATCATGGAAATCACTCAGATAACTGGTGCCCGAATAAAAATAT 1067
Query 1073 CAGACCGAGGTGATTTTATGTCTGGAACCACTGATAGGAAAGTGAGTATCACAGGGCCAC 1132
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CAGACCGAGGTGATTTCATGTCTGGAACCACTGATAGGAAAGTGAGTATCACAGGGCCAC 1127
Query 1133 AGAGAGCAATCCAACAAGCTGAGACAATGATAAAACAGAAAGTTGATTCAGCCACAGAGA 1192
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1128 AGAGAGCAATCCAACAAGCTGAGACGATGATAAAACAGAAAGTTGATTCAGCCACAGAGA 1187
Query 1193 GAACCACCGATTGAAACCGTTAA--GAGAATCCATCTCGGTTCCTATCTTTGGTCTGTTG 1250
|| ||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1188 GAGCCACCGATTAAAACCGTTAAAAGAGAATCCATCTCAGTTCCTATCTTTGGTCTGTTT 1247
Query 1251 ACTTCATTTGTGGAGGCTTAAGCTATCGGATGGGGATCATTAATCATCTTTGAGTGAGGC 1310
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1248 ACTTCATTTGTTGAGGCTTAAGCTTTCGGATGGGGATCATTAATCATCTTTGAGTGAGGC 1307
Query 1311 AGAGATTTCTCTCTAGGAGCTCTCTTTCGTTTTATTTATATGTCGACATTATATAATGTG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AGAGATTTCTCTCTAGGAGCTCTCTTTCGTTTTATTTATATGTCGACATTATATAATGTG 1367
Query 1371 TTTTTCTCTGGGAGAGAAGCAGATTTGGAGTTAGAGAAGTACTATTTTCATTTGTTCTTT 1430
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1368 TTTTTCTCTGGGAGAGAAGCAGATTTGGAGTTAGAAAAGTACTATTTTCATTTGTT-TTT 1426
Query 1431 TAATAACTTTGTTGCAATTTGTTGAAGTTTTGTTTCCCTT--GAGTTCTTTCTGTTGTAA 1488
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1427 TAATAAATTTGTTGCAATTTGTTGAAGTTTTGTTTCCCTTTTGAGTTCTTTCTGTTGTAA 1486
Query 1489 CAATTTACAATAACCAGCCATTACATTGCATTT-GCTTCTTTCTTTTATCAACTATTTTC 1547
||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
Sbjct 1487 CAATTTACAATAACCAGCCTTTACATTGCATTTTGCTTCCTTCTTTTATCAACTATTTAC 1546
Query 1548 AGTT 1551
||||
Sbjct 1547 AGTT 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5