BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04440.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487226 jgi|Araly1|487226|fgenesh2_kg.6__360__AT5G04440.1 1688 0.0
> Ahg487226 jgi|Araly1|487226|fgenesh2_kg.6__360__AT5G04440.1
Length=1173
Score = 1688 bits (914), Expect = 0.0
Identities = 1102/1189 (93%), Gaps = 28/1189 (2%)
Strand=Plus/Plus
Query 12 AATCTTATCACGTTTCTCTCACTCTCTCTC--CTTCGCTTGTGTGTTTAAGCTAAGCCGT 69
||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 2 AATCTTATCACCTTTCTCTCACTCTCTCTCTGCTTCGCTTCTGTGTTTAAGCTGAGCCGT 61
Query 70 T-AGTCGTTAAACATCTCATATCCTAAAACGCCGTCGTTTTAGCTATGGCGTTGAGCTCA 128
| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TAAGTCGTTAAAAATCTCGTATCCTAAAACGCCGTCGTTTTAGCTATGGCGTTGAGCTCA 121
Query 129 GCTACGCTTAGACTTACCTCTCTGTCGTTCTCGGCGAAGAAGACGAATCGAAACCCTAGA 188
||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 122 GCTACGCTTAGACTTACCTCTTTATCGTTCTCAGCGAAGAAGACGAATCGAAACCCTAGA 181
Query 189 AATCCAGCTCTCTCCTTCACCATCACTAGCTCATCGTCCTTTGACGAATCACCCAAACCT 248
|||||| ||||||||||| |||| |||||||||||||| ||||||||| |||| ||||||
Sbjct 182 AATCCATCTCTCTCCTTCGCCATTACTAGCTCATCGTCTTTTGACGAACCACCTAAACCT 241
Query 249 TCTTCTCTCGCCACTTCCTCTTCTACGTCACCTATACGCGTCTCCTCTAGTTCTACCCCC 308
|| ||| | | ||||||||||| ||||||| |||||||| || || || ||||||
Sbjct 242 TC-TCT-T-G------CCTCTTCTACGCCACCTATTCGCGTCTCATCGAGCTCCACCCCC 292
Query 309 AAAGCTCGATTCATCGCTCGTCAGAAACAATCCGTCTCCGTTCGTCAGCTACAGCGACCT 368
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 293 AAAGCTCGATTCATCGCTCGTCAGAAACAATCCATCTCCGTTCGTCAGCTCCAGCGACCT 352
Query 369 CTAATTGAGTATATGAGCTTACCTGCGAGTCAGTACTCGGTGCTTGATGCGGAGAGGATT 428
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 353 CTAATTGAGTATATGAGCTTACCAGCAAGTCAGTACTCGGTGCTTGATGCGGAGAGGATT 412
Query 429 GAGAGAGTTGATGATAACACGTTTAGATGTTATGTTTATACGTTTAAATTCTTCAACTTT 488
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 413 GAGAGAGTTGATGATAACACGTTCAGATGTTATGTTTATACTTTTAAATTCTTCAACTTT 472
Query 489 GAAGTCTGCCCTGTTTTGCTTGTCAGGGTTGAAGAACAGCCTAATGGCTGCTGCATCAAG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAAGTCTGCCCTGTTTTGCTTGTCAGGGTTGAAGAACAGCCTAATGGCTGCTGCATCAAG 532
Query 549 CTCTTGTCCTGCAAGCTTGAGGGATCTCCTGTTGTGGTTGCTCAAAATGACAAATTTGAT 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 533 CTCTTGTCCTGCAAGCTTGAGGGATCCCCTGTTGTGGTTGCTCAAAATGACAAATTTGAT 592
Query 609 GCTTCTATGGTGAACCGGGTATCATGTGATAGCACTCAGGAGGGCT-CATCAGAGCAACA 667
||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 593 GCTTCTATGGTGAACCGGGTATCATGTGATAGCACTCAGGAAGG-TACATCAGAGCAACA 651
Query 668 AATTACTTCAGATGCAGTCATTGAGGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTT 727
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AATTACTTCTGATGCAGTCATTGAGGTCAATATCGAGATTCCTTTTGCATTTAGAGTCTT 711
Query 728 CCCAGTGGGAGCAATAGAGGCGACTGGGACACAAGTTCTTGATCAAATTCTTAAACTCAT 787
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 712 CCCAGTCGGAGCAATAGAGGCTACAGGGACACAAGTTCTTGATCAAATTCTTAAACTCAT 771
Query 788 GCTACCTCGATTTTTGTCACAGCTCTCCAAAGACTATCATGCATGGGCTTCGGGAGACAC 847
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||
Sbjct 772 GCTACCGCGATTTTTGTCACAGCTCTCGAAAGATTATCAAGCATGGGCTTCTGGAGACAC 831
Query 848 TTCAAGGCAACCTCTTGGGACCGGTGAGATCTGATAGTAAAGCAAAAGCTACCGTACGTA 907
||||||||||||||||||||| || ||||||||| ||||||||||||||||| | |||
Sbjct 832 TTCAAGGCAACCTCTTGGGACTGGCGAGATCTGACAGTAAAGCAAAAGCTAC--T--GTA 887
Query 908 CCTGGTTCAACGATCCTGTGCCTCCTCGAGTTCAAATAGGGGATGATAGCAAATTCTCGA 967
|||||||||||||||||| |||||||| ||||||||| ||||||| || | |||||||||
Sbjct 888 CCTGGTTCAACGATCCTGCGCCTCCTCAAGTTCAAATCGGGGATGTTAACTAATTCTCGA 947
Query 968 TCTTTTTCAATGTGGTATTCGGGTAAAATAATCACAAAGGAATCTGTAGTCACTGGAATT 1027
||||||| |||||| |||| ||||||||| |||||||| |||||||||||| ||||||||
Sbjct 948 TCTTTTTTAATGTGTTATTGGGGTAAAATGATCACAAATGAATCTGTAGTCTCTGGAATT 1007
Query 1028 TCAACCCTTTTCAATAGAATACGTTTGTTTGTTTGTTC----CACTGTAATCTCACGGTG 1083
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 TCAACCATTTTCAATAGAATACGTTTGTTTGTTTGTTTGTTTCACTGTAATCTCACGGTG 1067
Query 1084 TGTCATGTTAATGATCCAACCGAAAGTTCCTTAAACGGATCT-CCTTTGTACCAAAAA-A 1141
||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||| |
Sbjct 1068 TGTCATGGTAAT---CCAACCGGAAGTTCCCTAAACGGATCTACCTTTGTACCAAAAATA 1124
Query 1142 C-TGTCTGGTAGAACTAAAATTGAACCGATAAATGGATGAGCCGGTTCA 1189
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGTGTCTGATAGAACTAAAATTGAACCGATAAATGGATGAGCCGGTTCA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5