BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04470.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487228 jgi|Araly1|487228|fgenesh2_kg.6__362__AT5G04470.1 1131 0.0
> Ahg487228 jgi|Araly1|487228|fgenesh2_kg.6__362__AT5G04470.1
Length=786
Score = 1131 bits (612), Expect = 0.0
Identities = 722/771 (94%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 1 AAAGACAGAAGCACATATATATAAGAAACCCACAAGTCCACTTCTCTAAGAAGATTTGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGACAGAAGCACATATATATAAGAAACCCACAAGTCCACTTCTCTAAGAAGATTTGTT 60
Query 61 CAGGCACACGCTAAAACACACAAACaaaaa-aaCAACTCTTCAAGAACATATACATTTAA 119
|||||||||||||||||||||||||||||| ||| | |||| |||||||||| ||||||
Sbjct 61 CAGGCACACGCTAAAACACACAAACAAAAATAAC--C-CTTCGAGAACATATAAATTTAA 117
Query 120 TATTTATATAAACAA-AAAA---GAATGGATCTTGATTTAATACAAGATCTGCCCATCTT 175
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 TATTTATATAAAAAAGAAAAAAAGAATGGATCTTGATTTAATACAAGATCTGCCCATCTT 177
Query 176 GAATTTCCCACCAGCCATCAAGATCCGAGCCAACACCAACAGAGATGATGACGGCGGCGG 235
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 178 GAATTTCCCACCAGCCATCAAGATCCGAACCAACACCAACAGAGATGATGACGGCGGCGG 237
Query 236 CTGCACCACTCCCACTTCTTCCGACCACAAGATTCCTCCCACCACAGCCACCACTCCTCC 295
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTGCACCACTCCTACTTCCTCCGACCACAAGATTCCTCCCACCACAGCCACCACTCCTCC 297
Query 296 TCCTCCACCGCAGAAACCCCGTCCACCTTCCACACCGTCGTCTCTCGGCATCAGATCTTG 355
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 298 TCCTCCGCCGCAGAAACCCCGTCCACCTTCTACGCCGTCGTCTCTCGGCATCAGATCTTG 357
Query 356 CAAGAGAAAGCTTATGACGTCATTGTCCAAGT---ATGAGATCATCGTCAACAAAGATGA 412
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 358 CAAGAGGAAGCTTATGACGTCATTATCCAAGTCGTATGAGATCATCGTCAACAAAGATGA 417
Query 413 GATCGAGCGGTTCTTCTCCTCTGTTTACAACCAAACGATGGCGTCATCCACCACGAC--- 469
||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||| ||
Sbjct 418 GATCGAGCGGTTCTTCTCCTCCGTTTATAACCAGACGACGACGTCATCCACCACCACCAC 477
Query 470 ------GGCTATCACGGTGGCCAAGCGGCGAAGAAGTTTCCGTTCTTGTTCACGAAGATG 523
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 478 CACCACGGCTATCACGGTGGCCAAGCGGCGGAGAAGTTTCCGTTCTTGTTCACGAAGGTG 537
Query 524 ATCAATAATTGGACGTTTCATTAAAGGTTCCATAATTTCGAATAGCtttttcgattttta 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATCAATAATTGGAAGTTTCATTAAAGGTTCCATAATTTCGAATAGCTTTTTCGATTTTTA 597
Query 584 tttatttttatgtaatgtttttatCAACTTTACACGTCGACCCACTCTATAAATATACAT 643
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTATTTT-ATGTAATGTTTTTATCAACTTTACACGTCGACCCACTCTATAAATATACAT 656
Query 644 GTGCGATCGATCGATGGAATCtttttttCTTTACTAAAATTTGCTAGCTGTTTTGATAAC 703
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 GTGCGATCGATCGATGGAATCTTTTTTTCTTTACTAAATTTTGCTAGCTGTTTTGATAAC 716
Query 704 GAATGACCAAATTC-CAGTAGTTTTATTGACATCGTAAATATATTTCCAGC 753
|||||| ||| ||| | | ||||||||||||||||||||| |||||||||
Sbjct 717 GAATGAACAATTTCTCTG--GTTTTATTGACATCGTAAATAAATTTCCAGC 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5