BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G04490.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg325092 jgi|Araly1|325092|fgenesh1_pm.C_scaffold_6000312 1408 0.0 > Ahg325092 jgi|Araly1|325092|fgenesh1_pm.C_scaffold_6000312 Length=915 Score = 1408 bits (762), Expect = 0.0 Identities = 865/916 (94%), Gaps = 2/916 (0%) Strand=Plus/Plus Query 108 ATGGCAGCAACCTTACCTCTATCTCCGATCAATCATCAGTTGTGTCGGTTCGGGAACAAC 167 ||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||| Sbjct 1 ATGGCTGCAACCTTACCTCTATCTCCGATTAGCCATCAGTTGTGTCGGTTCGGGAGCAAC 60 Query 168 TCTTTGACGACTCACCGGTTCTGTTCTCCTGGCTTCTTGATTTCTTCTCCTTGTTTCATT 227 ||||||| || || ||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 61 GCTTTGACAACGCATCGGTTCTGTTCGCCTAGCTTCTTGATTTCTTCTCCTTGTTTCATC 120 Query 228 GGTTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCA 287 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCC 180 Query 288 GCAGTTGCGACGAATTCGCTGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTTGGTGGA 347 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 181 GCAGTTGCGACGAATTCGATGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTCGGTGGA 240 Query 348 GCATACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTCATTCAACAGAGT 407 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 GCTTACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTGATTCAACAGAGT 300 Query 408 TTGAGCAGAAAGCTTGTGCATATACTCTCAGGTCTGCTTTTCGTACTTGCGTGGCCAATC 467 ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 TTGAGTAGAAAGCTTGTACATATACTCTCAGGTCTGCTTTTCGTACTCGCGTGGCCAATC 360 Query 468 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTTGTTCCGTTAGTGAATGGCTTA 527 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 361 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTCGTTCCGTTAGTTAATGGCTTA 420 Query 528 AGGCTTGTTATTAACGGACTATCCATTTCCCCAAATTCGA-TGCTAATCAAATCCGTCAC 586 ||||||||||||||||||||||| ||||||| ||||| | | || |||||||| ||||| Sbjct 421 AGGCTTGTTATTAACGGACTATCTGTTTCCCCCAATTCTACT-CTTATCAAATCTGTCAC 479 Query 587 AAGAGAAGGGAGAGCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTCTAGCTCTTCT 646 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 AAGAGAAGGGAGACCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTTTAGCTCTTCT 539 Query 647 TTTCTCTGCGGTTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTAGCAATGAT 706 | ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 TATCTCTGCCATTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTGGCAATGAT 599 Query 707 GTGTGGTGGCGATGGAATAGCTGATATAATGGGACGTAAGTTTGGGTCAACTAAGATACC 766 ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 600 GTGCGGTGGCGATGGAATAGCTGATATAATGGGACGAAAGTTTGGGTCAGCTAAGATACC 659 Query 767 TTACAACCCAAGAAAGAGTTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 826 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TTACAACCCAAGAAAGAGCTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 719 Query 827 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 779 Query 887 GACCTTGCAGAGAGTAGCAATGGTCTCAATGGTCGCCACGGTAGTCGAGTCGCTACCCAT 946 |||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| || Sbjct 780 GACCTTCCAGAGAGTCGCAATGGTCTCAATGGTAGCTACGGTGGTCGAGTCGCTACCTAT 839 Query 947 CACCGATCAATTAGACGACAATATTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 1006 ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 CACAGATCAATTAGACGACAACGTTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 899 Query 1007 AAGTTTCGGATATTAG 1022 |||||||||||||||| Sbjct 900 AAGTTTCGGATATTAG 915 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5