BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04490.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325092 jgi|Araly1|325092|fgenesh1_pm.C_scaffold_6000312 1408 0.0
> Ahg325092 jgi|Araly1|325092|fgenesh1_pm.C_scaffold_6000312
Length=915
Score = 1408 bits (762), Expect = 0.0
Identities = 865/916 (94%), Gaps = 2/916 (0%)
Strand=Plus/Plus
Query 108 ATGGCAGCAACCTTACCTCTATCTCCGATCAATCATCAGTTGTGTCGGTTCGGGAACAAC 167
||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 1 ATGGCTGCAACCTTACCTCTATCTCCGATTAGCCATCAGTTGTGTCGGTTCGGGAGCAAC 60
Query 168 TCTTTGACGACTCACCGGTTCTGTTCTCCTGGCTTCTTGATTTCTTCTCCTTGTTTCATT 227
||||||| || || ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 61 GCTTTGACAACGCATCGGTTCTGTTCGCCTAGCTTCTTGATTTCTTCTCCTTGTTTCATC 120
Query 228 GGTTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCA 287
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCTTGACCGGAATGGGCTCTGCTACTCAGTTACGTGCTCGTCGTTCTCTGATCTCTTCC 180
Query 288 GCAGTTGCGACGAATTCGCTGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTTGGTGGA 347
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GCAGTTGCGACGAATTCGATGTTGCATGACGTCGGAGCCACCGTGGCAGTGCTCGGTGGA 240
Query 348 GCATACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTCATTCAACAGAGT 407
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GCTTACGCGCTTGTCTTAAGCTTCGAGAGTCTCACCAAGCGAAACGTGATTCAACAGAGT 300
Query 408 TTGAGCAGAAAGCTTGTGCATATACTCTCAGGTCTGCTTTTCGTACTTGCGTGGCCAATC 467
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 TTGAGTAGAAAGCTTGTACATATACTCTCAGGTCTGCTTTTCGTACTCGCGTGGCCAATC 360
Query 468 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTTGTTCCGTTAGTGAATGGCTTA 527
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 TTCAGCGGATCGACCGAGGCTCGATACTTTGCTGCTTTCGTTCCGTTAGTTAATGGCTTA 420
Query 528 AGGCTTGTTATTAACGGACTATCCATTTCCCCAAATTCGA-TGCTAATCAAATCCGTCAC 586
||||||||||||||||||||||| ||||||| ||||| | | || |||||||| |||||
Sbjct 421 AGGCTTGTTATTAACGGACTATCTGTTTCCCCCAATTCTACT-CTTATCAAATCTGTCAC 479
Query 587 AAGAGAAGGGAGAGCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTCTAGCTCTTCT 646
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 AAGAGAAGGGAGACCAGAAGAGTTGCTTAAAGGTCCTTTGTTCTACGTTTTAGCTCTTCT 539
Query 647 TTTCTCTGCGGTTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTAGCAATGAT 706
| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TATCTCTGCCATTTTCTTCTGGAGAGAGTCTCCTATCGGTATGATCTCGTTGGCAATGAT 599
Query 707 GTGTGGTGGCGATGGAATAGCTGATATAATGGGACGTAAGTTTGGGTCAACTAAGATACC 766
||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 600 GTGCGGTGGCGATGGAATAGCTGATATAATGGGACGAAAGTTTGGGTCAGCTAAGATACC 659
Query 767 TTACAACCCAAGAAAGAGTTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 826
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTACAACCCAAGAAAGAGCTGGGCAGGAAGCATCTCCATGTTCATCTTCGGCTTCTTCAT 719
Query 827 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTCCATCGCATTACTTTACTATTACTCAAGCCTTGGGTACCTTCACATGAACTGGGAAAC 779
Query 887 GACCTTGCAGAGAGTAGCAATGGTCTCAATGGTCGCCACGGTAGTCGAGTCGCTACCCAT 946
|||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 780 GACCTTCCAGAGAGTCGCAATGGTCTCAATGGTAGCTACGGTGGTCGAGTCGCTACCTAT 839
Query 947 CACCGATCAATTAGACGACAATATTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 1006
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 CACAGATCAATTAGACGACAACGTTTCGGTTCCTCTGGCTACTATTTTAGCTGCTTATTT 899
Query 1007 AAGTTTCGGATATTAG 1022
||||||||||||||||
Sbjct 900 AAGTTTCGGATATTAG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5