BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04500.1
Length=2638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939849 jgi|Araly1|939849|scaffold_600393.1 3664 0.0
> Ahg939849 jgi|Araly1|939849|scaffold_600393.1
Length=2338
Score = 3664 bits (1984), Expect = 0.0
Identities = 2222/2340 (95%), Gaps = 4/2340 (0%)
Strand=Plus/Plus
Query 117 GAAGAAAAATTCGTTTTCTGATGATGGAAGAGACGACGGATAACACCGGAACAA-TCAGC 175
|||||||| ||||||||| ||||||||||||||||||||| ||| |||||| || |||||
Sbjct 1 GAAGAAAATTTCGTTTTCCGATGATGGAAGAGACGACGGAAAACGCCGGAA-AACTCAGC 59
Query 176 TCGCAGAAGAACGTTGCTGCTTCTGGTCACAATCATCACCACCGTTACAAATATATCTCA 235
|||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 60 TCGCAGAAGAACGTCGCTGCTTCTGGTCACAATCATCACAACCGTTACAAATACCTCTCA 119
Query 236 AATTACGGCGTCGGGAGGCGTTTTCTGTTCTTCGCTTCCTGTTTTGGATTTTACGCTTTC 295
|||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 120 AATTACGGCGCCGGGAGGCGTTTTCTGTTCTTCGCTTCGTGTTTTGGAGTTTACGCTTTG 179
Query 296 GTGGCTGCGACGTACGCGTGGTTCGTGTTTCCGCCGCATATCGGTCGTACGGATCATGTA 355
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGCTGCGACGTACGCTTGGTTCGTGTTTCCGCCGCATATCGGTCGTACGGATCATGTA 239
Query 356 TCGTCGTCTTCCTTAGGTTGCAGAGAGGACAATGAAGGTTCATGGTCCATTGGTGTTTTC 415
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TCGTCGTCTTCGTTAGGTTGCAGAGAAGACAATGAAGGTTCATGGTCCATTGGTGTTTTC 299
Query 416 TATGGAGATTCTCCCTTCTCTCTCAAACCAATCGAAACCAGAAATGTATGGAGAAACGAG 475
|||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 300 TATGGAGATTCTCCATTCTCTCTCAAACCAATCGAAACCATCAATGTATGGAGGAACGAG 359
Query 476 AGTGGAGCATGGCCTGTGACTAATCCAGTAATAACATGTGCCTCCTTCACCAATTCTGGT 535
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 AGTGGAGCATGGCCTGTGGCTAATCCAGTAATAACATGTGCCTCCTTCACCAATGCTGGT 419
Query 536 CTTCCAAGCAACTTTCTAGCTGATCCTTTTCTTTATGTACAGGGTGATACTCTTTACCTC 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCCAAGCAACTTTGTAGCTGATCCTTTTCTTTATGTACAGGGTGATACTCTTTACCTC 479
Query 596 TTCTTCGAAACTAAAAGCCCCATTACAATGCAAGGGGATATAGGAGCTGCTAAAAGTATT 655
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 480 TTCTTCGAAACTAAAAGCCCCATTACAATGCAAGGTGATATAGGAGTTGCTAAAAGTATT 539
Query 656 GATAAAGGAGCTACTTGGGAACCTCTTGGTATAGCTTTGGATGAAGCTTGGCACTTGTCT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATAAAGGAGCTACTTGGGAACCTCTTGGTATAGCTTTGGATGAAGCTTGGCACTTGTCT 599
Query 716 TTTCCATTCGTCTTCAATTACAACGGAGAAATATACATGATGCCCGAGAGTAATGAGATT 775
|||||||| ||||||||||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct 600 TTTCCATTTGTCTTCAATTACAACGGAGAAATATTCATGATGCCGGAGAGCAACGAGATT 659
Query 776 GGACAGCTTAATCTCTACCGTGCTGTTAACTTTCCATTAAGTTGGAAGCTGGAGAAAGTT 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 GGACAGCTTAATCTCTACCGTGCTGTTAACTTTCCTTTAAGTTGGAAGCTGGAGAAAGTT 719
Query 836 ATCTTGAAAAAGCCTCTTGTTGATTCGACCAT-AGTCCATCATGAAGGAATCTATTGGCT 894
|||||||||||||| ||||| ||||||||| | | | ||||| |||||||| ||||||||
Sbjct 720 ATCTTGAAAAAGCCGCTTGTGGATTCGACCTTGA-TACATCACGAAGGAATTTATTGGCT 778
Query 895 AATCGGATCAGATCATACTGGTTTTGGGGCGAAGAAAAATGGACAACTAGAAATTTGGTA 954
| | ||||||||||||| | |||||||||| ||||| |||||||| || |||||||||||
Sbjct 779 ATTTGGATCAGATCATAGTAGTTTTGGGGCCAAGAAGAATGGACAGCTTGAAATTTGGTA 838
Query 955 TAGTAGCTCTCCTTTAGGGACATGGAAGCCACACAAGAAGAATCCTATCTACAATGGTAA 1014
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 839 TAGTAGCTCTCCACTAGGGACGTGGAAACCACACAAGAAGAATCCTATCTACAATGGTAA 898
Query 1015 AAGAAGTATTGGAGCAAGAAACGGAGGCAGAGCGTTTCTATATGACGGGAGTCTTTATCG 1074
|||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 899 TAGAAGTGTTGGAGCAAGAAACGGAGGCAGAGCGTTTTTATATGACGGGAATCTTTATCG 958
Query 1075 TGTTGGTCAAGATTGTGGTGAAAATTACGGCAAAAGGATACGTGTTTCTAAGATTGAGGT 1134
|||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 959 TGTTGGTCAAGATTGTGGTGAAAATTACGGGAAAAGGATACGCGTTTTTAAGATTGAGGT 1018
Query 1135 TCTTTCCAAGGAAGAGTACAGAGAAGTTGAAGTCCCTTTCTCTTTGGAAGCGTCGCGTAA 1194
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1019 TCTTTCCAAGGAAGAGTACAGAGAAGTTGAAGTCCCTTTCTCTTTTGAAGCGTCGCATAA 1078
Query 1195 AGGTAAAAATTCTTGGAACGGGGTTAGGCAGCATCATTTTGATGTGAAACAGCTAAGTTC 1254
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 1079 GGGTAAAAATTCTTGGAACGGAGTTCGGCAGCATCATTTTGATGTGAAACAGCTGAGTTC 1138
Query 1255 TGGTGAATTCATTGGTCTTGTTGATGGTGACCGTGTAACTTCAGGCGATCTGTTTCATCG 1314
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGGTGAATTCATTGGTCTTCTTGATGGTGACCGTGTAACTTCAGGCGATCTGTTTCATCG 1198
Query 1315 GGTTATTCTTGGTTATGCCTCACTTGCAGCTGCTATTTCCGTTGTTATCTTACTTGGCTT 1374
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1199 GGTTATTCTCGGTTATGCCTCACTTGCGGCTGCTATTTCCGTGGTTATATTACTTGGGTT 1258
Query 1375 TTTGCTTGGGGTTGTGAACTGCATTGTTCCATCAACCTGGTGTATGAACTACTATGCGGG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTGCTTGGGGTTGTGAACTGCATTGTTCCATCAACCTGGTGTATGAACTACTATGCGGG 1318
Query 1435 GAAAAGAACCGATGCGCTCCTGAATCTCGAAACTGCGGGTTTGTTCTCAGAAAAGTTAAG 1494
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1319 AAAAAGAACCGATGCGCTCCTGAATCTGGAAACTGCGGGTTTGTTCTCAGAAAAGTTAAG 1378
Query 1495 ACGGATTGGTTCTCGCTTGAACCGAGTACCGCCTTTTCTCAGAGGATTCGTGAAGCCTAA 1554
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1379 ACGGATTGGTTCTCGCTTGAACAGAGTACCGCCTTTTCTCAGAGGATTTGTGAAGCCTAA 1438
Query 1555 TTCCTCCATGGGGAAATTTACGCTCGGTGTTATAGTCATTTTAGGACTTTTGCTCACATG 1614
|||||||||||| |||||||| ||||||||||| ||| || |||||||||||||||||||
Sbjct 1439 TTCCTCCATGGGAAAATTTACACTCGGTGTTATTGTCCTTGTAGGACTTTTGCTCACATG 1498
Query 1615 TGTAGGCGTGAGATACATCTACGGTGGAAGCGGAGCCGTTGAGCCTTATCCATTCAAAGG 1674
||||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||
Sbjct 1499 TGTAGGCGTGAGATACATCTATGGCGGAAGCGGAACCGTTGAGCCTTACCCATTCAAAGG 1558
Query 1675 TCACTTGTCTCAGTTTACGTTAGCAACTATGACTTATGATGCTCGTCTCTGGAATCTGAA 1734
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1559 TCACTTGTCTCAGTTCACGTTAGCAACTATGACTTACGATGCTCGTCTCTGGAATCTGAA 1618
Query 1735 AATGTACGTAAAGCGTTACTCTCGTTGTCCATCCGTTAAAGAGATAGTTGTCATATGGAA 1794
||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1619 AATGTACGTTAAGCGTTACTCTCGGTGTCCTTCCGTCAAAGAGATAGTTGTCATATGGAA 1678
Query 1795 CAAAGGACCGCCTCCTGACCTGTCCGAGCTAGACTCCGCGGTGCCAGTCAGAATCAGAGT 1854
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 1679 CAAAGGACCGCCTCCTGAACTGACCGAGCTAGACTCCGCCGTGCCAGTCAGAATCCGAGT 1738
Query 1855 CCAGAAACAGAATTCTCTGAACAACAGATTCGAGATCGATCCGCTGATTAAAACCCGAGC 1914
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1739 CCAGAAACAGAATTCTCTGAACAACAGATTTGAGATCGATCCGCTGATTAAAACCCGAGC 1798
Query 1915 CGTTCTTGAGCTTGACGACGATATAATGATGCCTTGTGATGACATTGAAAAAGGGTTTAG 1974
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1799 CGTTCTTGAGCTTGACGACGATATAATGATGCCTTGTGATGACATTGAAAAGGGGTTTAG 1858
Query 1975 AGTTTGGCGGGAGCATCCAGAGAGACTGGTCGGATTCTACCCGCGTTTTGTTGATCAAAC 2034
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1859 AGTTTGGCGGGAGCATCCAGAGAGACTGGTCGGATTCTACCCTCGTTTTGTTGATCAAAC 1918
Query 2035 CATGACTTATAGCGCAGAGAAGTTTGCAAGAAGTCATAAAGGATACAATATGATTCTCAC 2094
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1919 CATGACTTATAGCGCAGAGAAGTTTGCGAGAAGTCATAAAGGATACAATATGATTCTCAC 1978
Query 2095 GGGTGCAGCGTTTATGGACGTTCGCTTTGCCTTTGATATGTATCAATCAGATAAAGCGAA 2154
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 CGGTGCAGCGTTTATGGACGTTCGCTTTGCCTTTGATATGTATCAATCAGATAAAGCGAA 2038
Query 2155 ACTTGGTCGGGTATTTGTGGACGAGCAGTTTAATTGCGAAGACATTTTACTGAATTTCCT 2214
||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 2039 ACTCGGTCGGGAATTTGTGGGCGAGCAGTTTAATTGTGAAGACATTTTACTGAATTTCCT 2098
Query 2215 GTACGCGAATGCTAGTGGATCAGGAAAGGCTGTGGAGTATGTGAGACCGTCTTTGGTTAC 2274
|||||||||||| || || | ||||| || |||||||||||||||||||||||||| ||
Sbjct 2099 GTACGCGAATGCGAGCGGGTGGGGAAAAGCCGTGGAGTATGTGAGACCGTCTTTGGTAAC 2158
Query 2275 AATTGACACTTCGAAATTTTCCGGTGTAGCGATTAGTGGAAACACGAACCAACATTACAG 2334
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2159 AATTGACACTTCGAAATTTTCCGGTGTAGCAATTAGTGGAAACACGAACCAACATTACAG 2218
Query 2335 AAAGAGAAGTAAGTGTCTCCGGCGATTCTCGGATTTGTATGGAAGTTTGGTTGATCGAAG 2394
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2219 AAAGAGAAGTAAGTGTCTCCGGCGATTCTCTGATTTGTATGGAAGTTTGGCTGATCGAAT 2278
Query 2395 ATGGGAATTTGGTGGGAGAAAAGACGGGTGGGATTTGTAGATCAGTAGAGTTACTTGTAG 2454
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 2279 ATGGGAATTTGGTGGGAGAAAAGACGGGTGGGATTTGTAGAACAGTAGTGTTACTTATAG 2338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99491719940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5