BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04510.1
Length=2072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487232 jgi|Araly1|487232|fgenesh2_kg.6__366__AT5G04510.1 2645 0.0
Ahg928751 jgi|Araly1|928751|scaffold_301208.1 1628 0.0
Ahg928759 jgi|Araly1|928759|scaffold_301216.1 121 3e-26
> Ahg487232 jgi|Araly1|487232|fgenesh2_kg.6__366__AT5G04510.1
Length=1855
Score = 2645 bits (1432), Expect = 0.0
Identities = 1654/1754 (94%), Gaps = 43/1754 (2%)
Strand=Plus/Plus
Query 131 tctctgctctctctTCCCAATATTCTTCCTTTTTCTTCAATCGAGATTTTATCGC---TT 187
||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct 18 TCTCTGCTCTCTCTTCCCAATATTCTTCCTTTTTCATCAATCGAGATTTTCTCGCTTTTT 77
Query 188 TTTGATTCGAGAATTTCGAAATCGGAACCCACCACCACCACCCTCCATCGTCGCCAACAG 247
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 78 TTTAATTCGAGAATTTCGAAATCGGAACCCACCACCACCACCCTCAATCATCGCCAACAG 137
Query 248 ATCCAACGGTTCTCTGATTATTTTTATTTG--AAAATTGTCTTCTTTGTTCTCCCTCTCG 305
||||||||||||| ||||| ||||| |||| |||||||||||| | |||| |||
Sbjct 138 ATCCAACGGTTCTGTGATT-TTTTT-TTTGAAAAAATTGTCTTC--T-TTCT---TCT-- 187
Query 306 CTGGGTTTGATTCTGAGATTGATTAATCTAAATGGGTCGCATCGAGATTTAGAAGAAAAG 365
| || | | ||||||||||||||| |||||||| |||||||||||
Sbjct 188 C----------TC------T-CTCAATCTAAATGGGTCGTATCGAGATGTAGAAGAAAAG 230
Query 366 GGAAATGTTGGCAATGGAGAAAGAATTTGATTCAAAGCTTGTTCTTCAAGGGAACTCATC 425
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 231 GGAAATGTTGGCAATGGAGAAAGATTTTGATTCAAAGCTTGTTCTTCAAGGG-------- 282
Query 426 CAACGGTGCTAATGTTTCTAGAAGCAAAAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTT 485
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 283 -AACGGTGCTAATGTTTCCAGAAGCAAGAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTT 341
Query 486 CACCAGCCATGATTTCGAATTTGGCAAGATCTATGGTGTTGGTTCTTACTCTAAGGTTGT 545
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 342 CACCAGCCATGATTTCGAACTTGGCAAGATCTATGGTGTTGGTTCTTACTCAAAGGTTGT 401
Query 546 TAGGGCAAAGAAGAAGGAAACTGGAACTGTGTATGCTTTAAAGATTATGGACAAAAAGTT 605
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 402 TAGGGCAAAGAAGAAGGAATCTGGAACTGTGTATGCTTTAAAGATTATGGACAAAAGGTT 461
Query 606 TATCACCAAGGAGAATAAAAC-TGCTTATGTGAAATTGGAAAGGATTGTTCTTGATCAAC 664
||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 462 TATTACCAAGGAGAATAAAACAT-CTTATGTGAAATTGGAAAGGATTGTTCTTGATCAAC 520
Query 665 TTGAACATCCTGGGATCATTAAACTTTACTTCACGTTTCAAGACACATCCTCACTATATA 724
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 521 TTGAACATCCTGGGATCATTAAACTATACTTCACATTTCAAGATACATCCTCACTATATA 580
Query 725 TGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGGC 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 581 TGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGTC 640
Query 785 TATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATAC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTGGATGCTCTTGAGTATATAC 700
Query 845 ATAGTATGGGACTGATTCATCGAGATATTAAGCCGGAGAATCTGTTGCTGACTTCAGATG 904
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 701 ATAGTATGGGACTGATACATCGAGATATTAAGCCGGAGAATCTGTTGCTGACTTCGGATG 760
Query 905 GACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATGCAGGATAGCCAGATCACAG 964
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 761 GGCACATTAAGATTGCGGATTTTGGTAGTGTAAAGCCGATGCAGGATAGCCAGATCACAG 820
Query 965 TTCTACCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATG 1024
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TACTTCCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATG 880
Query 1025 TTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGGGAATGATCTTTGGGCTCTCG 1084
|||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||
Sbjct 881 TTCCTCCAGAAGTTCTCAACTCCTCTCCTGCAACTGTCGGAAATGATCTCTGGGCTCTCG 940
Query 1085 GCTGCACTCTCTATCAGATGCTTTCGGGGACTTCCCCATTTAAAGATGCAAGTGAATGGC 1144
|||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||
Sbjct 941 GCTGCACTCTCTATCAAATGCTTTCAGGGACTTCTCCATTCAAAGACGCAAGTGAATGGC 1000
Query 1145 TGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGCAG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1001 TGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGAAG 1060
Query 1205 CAAGAGACCTCATCGACCGGTTGCTGGATACCGAGCCAAGCAGAAGGCCAGGTGCTGGCT 1264
||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |
Sbjct 1061 CAAGAGACCTCATCGACCGCTTACTGGATACCGATCCAAGCAGAAGACCAGGTGCTGGTT 1120
Query 1265 CAGAAGGTTATGTTGCTCTTAAGAGACATCCTTTCTTTAATGGAGTTGACTGGAAGAATC 1324
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1121 CAGAAGGTTATGCTGCTCTTAAGAAACATCCTTTCTTTAATGGAGTTGACTGGAAGAATC 1180
Query 1325 TAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGCGTCTCAGACAGCATCTCCCG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGCGTCTCAGACAGCATCTCCCG 1240
Query 1385 AGAGGGATGACACACATGGTTCTCCATGGAACCTGACACATATTGGAGATTCTTTAGCCA 1444
||||||||||| | |||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1241 AGAGGGATGACGCGCATGGTTCACCATGGAACCTGTCACATATTGGAGATTCTTTACCCA 1300
Query 1445 CACAGAACGAGGGGCACAGTGCTCCTCCTACATCTTCTGAATCATCGGGTTCCATAACTC 1504
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1301 CACAGAACGAGGGGCATAGTGCTCCTTCTACATCTTCTGAATCATCGGGTTCCATAACTC 1360
Query 1505 GACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAACAGTTTTTAGAGCCAGGAGAAT 1564
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1361 GACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAACAGTTTTTGGAGCCAGGAGAAT 1420
Query 1565 CGGTTCTGATGATATCAGCGGTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGC 1624
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 CAGTTCTGATGATATCAGCCGTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGC 1480
Query 1625 TAATACTCACCAACAAACCCAAGCTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAG 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TAATACTCACCAACAAACCCAAGCTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAG 1540
Query 1685 GAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTGTAGTCACTAGCCCTTCAC 1744
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1541 GAAACATTATATGGTCTGATAACTCGAATGACCTCAACGTTCTAGTCACTAGCCCTTCAC 1600
Query 1745 ATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 ATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT 1660
Query 1805 CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACCGCTGAGACAAACTCCACTGAAGAA 1864
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1661 CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACCGCTGAGATAAACTCCACTGAAGAA 1720
Query 1865 TGGTTCTGTTAATT 1878
||||||||||||||
Sbjct 1721 TGGTTCTGTTAATT 1734
Score = 183 bits (99), Expect = 3e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 1912 TTAAACTGACCAAACTCCATTCTTCATATGTTTTTTCTATTTCACGCATCCTTGAAAAGA 1971
|||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||
Sbjct 1733 TTAAACTGACCAAACTCCATTCTTCATATGTTTTTTGTATTACACCCACCCTTGAAAAGA 1792
Query 1972 CCAGTTGGACACAAAACTGAAAAACTGCTTTTTGAATCCTTTGTATAAGTCAAACAAATG 2031
||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1793 CCACTTCGACACAAAACTGAAAAACTGCTTTTTGAATCCTTTATATAAGTCAAACAAAAG 1852
Query 2032 TAT 2034
|||
Sbjct 1853 TAT 1855
> Ahg928751 jgi|Araly1|928751|scaffold_301208.1
Length=1501
Score = 1628 bits (881), Expect = 0.0
Identities = 1306/1508 (87%), Gaps = 42/1508 (3%)
Strand=Plus/Plus
Query 355 TAGAAGAA-AAGGGAAATGTTGGCAATGGAGAAAGAATTTGATTCAAAGCTTGTTCTTCA 413
|||||||| |||| |||||| |||||||||| ||||||||||||||||||| ||||||
Sbjct 5 TAGAAGAAGTTGGGAGATGTTGACAATGGAGAAGGAATTTGATTCAAAGCTTGCTCTTCA 64
Query 414 AGGGAACTCATC--C-AACGGTGCTAA-TGTTTCTAGAAGCAAAAGCTTCTCCTTTAAAG 469
|||||| ||||| | || ||||| || | |||| ||||||||||||||| ||||||| |
Sbjct 65 AGGGAATTCATCTTCTAATGGTGC-AACTATTTCCAGAAGCAAAAGCTTCGCCTTTAAGG 123
Query 470 CTCCTCAAGAAAATTTCACC-AGCCATGATTTCGAATTTGGCAAGATCTATGGTGTTGGT 528
||||||| || ||||||||| | |||||||||||| | |||||||||||||| |||||
Sbjct 124 CTCCTCAGGAGAATTTCACCTA-CCATGATTTCGAGCTCGGCAAGATCTATGGCGTTGGC 182
Query 529 TCTTACTCTAAGGTTGTTAGGGCAAAGAAGAAGGA-AACTGGAACTGTGTATGCTTTAAA 587
||||| || |||||||||||||| ||||||||||| || ||||||||||||||| |||||
Sbjct 183 TCTTATTCAAAGGTTGTTAGGGCGAAGAAGAAGGATAA-TGGAACTGTGTATGCCTTAAA 241
Query 588 GATTATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTGAAATTGGAAAG 647
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 242 GATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGAG 301
Query 648 GATTGTTCTTGATCAACTTGAACATCCTGGGATCATTAAACT-TTACTTCACGTTTCAAG 706
|||||||||||||||||| |||||||| ||||| | ||||| || ||| || |||||||
Sbjct 302 GATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTT-CTTTACTTTTCAAG 360
Query 707 ACACATCC-TCACTATATATGGCACTTGAATCTTGTGAGGGTGGCGAGCTTTTCGACCAA 765
| ||| | |||||||| ||||| ||||||||||| || ||||| || ||||||||||||
Sbjct 361 ATACA-CAATCACTATACATGGCGCTTGAATCTTGCGAAGGTGGGGAACTTTTCGACCAA 419
Query 766 ATAACCAGAAAAGGTCGGCTATCGGAGGATGAAGCTCGGTTCTACACTGCAGAAGTTGTG 825
|| |||||||||||||| || || |||||||||||||||||||||| |||||||||||||
Sbjct 420 ATCACCAGAAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTG 479
Query 826 GATGCTCTTGAGTATATACATAGTATGGGACTGATTCATCGAGATATTAAGCCGGAGAAT 885
|| ||||||||||||||||||| |||||||||||| ||||||||||| ||||| ||||||
Sbjct 480 GACGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATCAAGCCAGAGAAT 539
Query 886 CTGTTGCTGACTTCAGATGGACACATTAAGATTGCGGATTTTGGAAGTGTAAAGCCGATG 945
|||||| | |||||||||||||| ||||||||||| |||||||| || |||||||| |||
Sbjct 540 CTGTTGTTAACTTCAGATGGACATATTAAGATTGCCGATTTTGGTAGCGTAAAGCCAATG 599
Query 946 CAGGATAGCCAGATCACAGTTCTACCTAATGCAGCTTCTGACGATAAGGCGTGCACTTTT 1005
|| || ||||| |||||||| || ||||| || ||||| || ||||||||||||||||||
Sbjct 600 CAAGACAGCCAAATCACAGTGCTTCCTAACGCGGCTTCCGATGATAAGGCGTGCACTTTT 659
Query 1006 GTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCCTCTCCCGCAACTTTCGGG 1065
|||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 660 GTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACTTTCGGA 719
Query 1066 AATGATCTTTGGGCTCTCGGCTGCACTCTCTATCAGATGCTTTCGGGGACTTCCCCATTT 1125
|||||||| ||||| |||||||||||||| || || |||||||| || |||||||||||
Sbjct 720 AATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTC 779
Query 1126 AAAGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCCAGAGATATAAAGTTCCCA 1185
||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||
Sbjct 780 AAAGATGCAAGCGAATGGCTAATTTTCCAAAGAATCATAGCTAGAGATATAAAGTTTCCA 839
Query 1186 AATCATTTTTCAGAAGCAGCAAGAGACCTCATCGACCGGTTGCTGGATACCGAGCCAAGC 1245
|||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || ||
Sbjct 840 AATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGT 899
Query 1246 AGAAGGCCAGGTGCTGGCTCAGAAGGTTATG-TTGCTCTTAAGAGACATCCTTTCTTTAA 1304
||||| ||||| ||||| ||||||||||||| || |||| ||||||||||||||||| ||
Sbjct 900 AGAAGACCAGGAGCTGGATCAGAAGGTTATGCTT-CTCTCAAGAGACATCCTTTCTTCAA 958
Query 1305 TGGAGTTGACTGGAAGAATCTAAGGTCCCAGACTCCTCCAAAACTAGCTCCAGATCCTGC 1364
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 959 GGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGC 1018
Query 1365 GTCTCAGA-CAGCATCTCCCGAGAGGGATGACACACATGGTTCTCCATGGAACCTGACAC 1423
|||||| | |||||||||| |||||||| | |||||||||||||||| ||||
Sbjct 1019 GTCTCA-ATCAGCATCTCCTGAGAGGGA---C------GGTTCTCCATGGAACCCAACAC 1068
Query 1424 ATATTGGAGATTCTTTAGCCACACAGAACGAGGGGCACAGTGCTCCTCCTACATCTTCTG 1483
|| |||||||| | | || | |||||||| || |||| | || ||| |||
Sbjct 1069 ATGTTGGAGATACATCAGTCTTGCAGAACGATGGACACAACGG-------AC-TCT-CTG 1119
Query 1484 AATCATCGGGTTCCATAACTCGACTTGCTTCAATAGACTCTTTTGATTCAAGATGGCAAC 1543
|||| || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||
Sbjct 1120 AATCTTCAGGTTCCATAACTCGGCTTGCCTCCATAGACTCTTTTGATTCGAGATGGCAAC 1179
Query 1544 AGTTTTTAGAGCCAGGAGAATCGGTTCTGATGATATCAGCGGTGAAGAAGCTTCAGAAAA 1603
||||| |||| || |||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1180 AGTTTCTAGAACCGGGAGAATCGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAA 1239
Query 1604 TAACGAGCAAGAAGGTGCAGCTAATACTCACCAACAAACCCAAG-CTGATCTATGTCGAC 1662
| || || |||||||||||||||||||||||||||||||| ||| ||||| || || |||
Sbjct 1240 TCACAAGTAAGAAGGTGCAGCTAATACTCACCAACAAACC-AAGACTGATATACGTTGAC 1298
Query 1663 CCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGATAACTCGAATGACCTCAAC 1722
|| ||||| || || || ||||| |||||||| |||||||||||||| || |||||||||
Sbjct 1299 CCATCAAAGCTTGTAGTAAAAGGGAACATTATCTGGTCTGATAACTCCAACGACCTCAAC 1358
Query 1723 GTTGTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGCCAAAGAAGGTTTTATCATTT 1782
||| |||| | || ||||| ||||||||||||||||| || ||||| |||||||| |||
Sbjct 1359 GTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTT 1418
Query 1783 GAAGACGCAAAACAGAGAGCTT--CAGTGTGGAAAAAGGCAATCGAGACTCTTCAGAACC 1840
||||| || ||||| ||||||| ||||| | |||||||||||||| |||||||| ||||
Sbjct 1419 GAAGATGCGAAACAAAGAGCTTTGCAGTG-G-AAAAAGGCAATCGAAACTCTTCAAAACC 1476
Query 1841 GCTGAGAC 1848
| ||||||
Sbjct 1477 GTTGAGAC 1484
> Ahg928759 jgi|Araly1|928759|scaffold_301216.1
Length=272
Score = 121 bits (65), Expect = 3e-26
Identities = 76/81 (94%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 581 CTTTAAAGATTATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTGAAAT 640
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 116 CTTT-AAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAAT 174
Query 641 TGGAAAGGATTGTTCTTGATC 661
|||| ||||||||||||||||
Sbjct 175 TGGAGAGGATTGTTCTTGATC 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77932641270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5