BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04520.1
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487234 jgi|Araly1|487234|fgenesh2_kg.6__368__AT5G04520.1 1402 0.0
> Ahg487234 jgi|Araly1|487234|fgenesh2_kg.6__368__AT5G04520.1
Length=864
Score = 1402 bits (759), Expect = 0.0
Identities = 829/863 (96%), Gaps = 4/863 (0%)
Strand=Plus/Plus
Query 1 ATGGATTGCGAAACCCTAATTGAATCGGCGATCAGGATTCTGAACACATCAGACCCGCAC 60
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1 ATGGATTGCGAAACCCTAATTGAATCGGCGATTAGAATTCTGAACACATCGGACCCGCAC 60
Query 61 GAAAAAGCACGACTTGGCGATTCGATAGCCGTGAAATGGCTTCAAGGTGCAATCGCCGAA 120
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 GAAAAAGCCCGACTTGGCGATTCGATAGCTGTGAAATGGCTCCAAGGTGCAATCGCCGAA 120
Query 121 CCCTACGATCCCACCGTCGACT-TCCCCGTCCCGGACAGACCGGCTCGACTTCCGGTGAA 179
|||||||||||||||||||| | || ||||||| ||||| ||||||||||||||||||||
Sbjct 121 CCCTACGATCCCACCGTCGA-TCTCTCCGTCCCAGACAGGCCGGCTCGACTTCCGGTGAA 179
Query 180 ACTGGTGTCTCCAAGTTTGATGCCGAAGCTGGGAAGAGCTGGTAGCTTACAGAGCAGGCA 239
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACTGGTGTCACCGAGTTTGATGCCGAAGCTGGGAAGAGCTGGTAGCTTACAGAGCAGGCA 239
Query 240 AGCAATTGTTCATAGTCTTGCTCATACTGAAAGTTGGGCTATTGACTTATCTTGGGATAT 299
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 240 AGCCATTGTTCATAGTCTTGCTCATACTGAAAGCTGGGCAATTGACTTATCTTGGGATAT 299
Query 300 AATTGCTCGTTTTGGCAAGCAAGAGAAGATGCCAAGAGACTTCTTTACGGATTTTGTTCG 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 AATTGCTCGTTTTGGCAAGCAAGAGAAGATGCCGAGAGACTTCTTTACGGATTTTGTTCG 359
Query 360 TGTTGCTCAGGACGAAGGTCGTCACTTCACTTTGCTTGCAGCTCGGCTTGAGGAAATTGG 419
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 360 TGTTGCTCAGGACGAAGGTCGCCACTTCACTTTGCTCGCAGCTCGGCTTGAGGAAATTGG 419
Query 420 TTCTAGTTACGGTGCATTGCCTGCTCATGACGGTCTTTGGGACTCTGCTACTGCCACATC 479
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCTACTTACGGTGCATTGCCTGCTCATGATGGTCTTTGGGACTCTGCTACTGCCACATC 479
Query 480 TCACGATCTTTTGGCTCGTTTGGCTATAGAGCATTGCGTTCACGAGGCTAGAGGGCTTGA 539
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TCACGATCTTTTAGCTCGGTTGGCTATTGAGCATTGCGTTCACGAGGCTAGAGGGCTTGA 539
Query 540 TGTACTGCCCACAACGATATCTCGGTTTAGGAATGGAGGCGATAACGAGACAGCAGATTT 599
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTACTGCCCACGACGATATCCCGGTTTAGGAATGGAGGCGATAACGAGACAGCAGATTT 599
Query 600 ACTAGAGAAAGTTGTGTACCCTGAAGAAATCACTCACTGTGCAGCTGGAGTAAAATGGTT 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 ACTAGAGAAAGTTGTGTACCCTGAAGAAATCACTCACTGTGCAGCTGGTGTAAAATGGTT 659
Query 660 TAAGTATCTATGTGAACGGTCCAAGGATCCTGAATTCACCATCAGCAGCAAAGAATCAGA 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TAAGTATCTATGTGAACGGTCCAAGGATCCAGAATTCACCATCAGCAGCAAAGAATCAGA 719
Query 720 TGATAGCAATGAAGAGATAATCAACAAGTTTCATTCGGTTGTAAGGGAGCATTTCAGAGG 779
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 TGATAGCAATCAAGAGATAATCAACAAGTTTCATTCGGTAGTAAGGGAGCATTTCAGAGG 779
Query 780 ACCGTTGAAACCGCCTTTTAATGCT-GAAGCAAGAAAAGCTGCTGGCTTTGGTCCTCAAT 838
|||||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||
Sbjct 780 ACCGTTGAAACCGCCTTTCAATG-TAGAAGCAAGAAAAGCTGCTGGCTTTGGCCCTCAAT 838
Query 839 GGTATGAACCTCTTGCTGTCAAA 861
|||||||||||||||||||||||
Sbjct 839 GGTATGAACCTCTTGCTGTCAAA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32442602367
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5