BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G04530.1
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487235 jgi|Araly1|487235|fgenesh2_kg.6__369__AT5G04530.1 2495 0.0
> Ahg487235 jgi|Araly1|487235|fgenesh2_kg.6__369__AT5G04530.1
Length=1844
Score = 2495 bits (1351), Expect = 0.0
Identities = 1723/1889 (91%), Gaps = 80/1889 (4%)
Strand=Plus/Plus
Query 12 ACACAATTCACTTAAttctcac-tcactctctttc--cttctc-----tactctctgttt 63
|||||||||||| ||||||||| | |||||||||| ||||| | || ||| |||
Sbjct 1 ACACAATTCACTAAATTCTCACAT-ACTCTCTTTCTTTTTCTCTGTGTTTCTTTCTCTTT 59
Query 64 ctttcttccatggagctcttctcactctcttctcttctcctactctccactctcttcGTT 123
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 60 CTTTCTTCCATGGAGCTCTTCTCACTTTCTTCTCTGCTCCTACTCTCCACTCTCTTCCTC 119
Query 124 TTCTACATCTTCAAGTTTGTTTTCAAAAGAAGAAACCAGAGAAACTGCTACATGCTTCAC 183
|||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 120 TTCTACATCTCCAAATTTGTTCTCAAAAGAAGAAACCAGAGAAAATGCTACATGCTTCAC 179
Query 184 TACGAGTGCTACAAGGGCATGGA-AGAGAGAAAACTCGACACCGAGACTTGTGCTAAGGT 242
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 180 TACGAGTGCTACAAGGGCATGGACA-AGAGAAAACTCGACACCGAGACTTGTGCTAAGGT 238
Query 243 CGTTCAACGAAACAAGAACTTGGGTCTTGAAGAGTACAGGTTTCTCCTTCGTACTATGGC 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 CGTTCAACGAAACAAGAACTTGGGTCTTGAAGAGTACAGGTTTCTCCTTCGTACAATGGC 298
Query 303 TAGTTCCGGGATAGGAGAGGAAACGTACGGCCCAAGAAATGTGCTTGAAGGTAGAGAAGA 362
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 299 TAGTTCCGGGATTGGAGAGGAAACGTACGGTCCAAGAAACGTGCTTGAAGGTAGAGAAGA 358
Query 363 CTCTCCTACTCTCCTTGACGCTCACTCCGAAATGGACGAGATCATGTTCGACACTCTCGA 422
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCTCCTACTCTCCTCGATGCTCACTCCGAAATGGACGAGATCATGTTCGACACTCTCGA 418
Query 423 CAAGCTTTTCCACAAGACAAAAGGCTCAATCTCTCCTTCAGACATTGATATTCTCGTTGT 482
||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 419 CAATCTTTTCCACAAGACAAAAGGCTCAATCTCTCCTTCAGACATCGACATTCTCGTAGT 478
Query 483 CAACGTCTCACTCTTCGCTCCATCTCCTTCCCTAACCTCACGAGTCATCAACAGATACAA 542
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CAACGTCTCACTCTTTGCTCCATCTCCTTCTCTAACCTCACGAGTCATCAACAGATACAA 538
Query 543 GATGAGAGAAGACATCAAATCCTACAATCTCTCGGGACTAGGGTGTAGCGCGAGCGTTAT 602
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 539 GATGAGAGAAGACATCAAATCCTTCAACCTCTCGGGCCTAGGGTGTAGCGCGAGCGTTAT 598
Query 603 ATCGATAGATATCGTGCAAAGGATGTTCGAAACT-CGTGAAAACGCTCTCGCACTCGTGG 661
|||||||||||||||||||||||| ||||||||| | |||||| ||| ||||||||||||
Sbjct 599 ATCGATAGATATCGTGCAAAGGATATTCGAAACTAC-TGAAAATGCTATCGCACTCGTGG 657
Query 662 TTAGCACCGAGACAATGGGTCCTCACTGGTACTGCGGTAAAGATAGGTCAATGATGCTCT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAGCACCGAGACAATGGGTCCTCACTGGTACTGCGGTAAAGATAGGTCAATGATGCTCT 717
Query 722 CAAACTGTCTCTTCCGTGCCGGAGGAAGCTCTGTTCTGTTAACCAACGCAGCTAGGTTCA 781
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 CAAACTGTCTCTTCCGTGCCGGAGGAAGCTCTGTTCTGTTAACCAACGCAGCTCGGTTCA 777
Query 782 AGAACCAGGCTTTGATGAAGCTCGTGACAGTGGTCCGGGCTCATGTTGGCTCAGACGACG 841
|||||| ||||||||||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 778 AGAACCGGGCTTTGATGAAGCTCGTGACTGTGGTCCGGGCCCATGTGGGTTCAGACGACG 837
Query 842 AGGCCTACTCGTGCTGCATACAAATGGAGGACAGAGATGGTCATCCAGGCTTTCTCTTAA 901
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 838 AGGCCTACTCGTGCTGTATGCAAATGGAGGACAGAGATGGTCATCCAGGTTTTCTCTTAA 897
Query 902 CCAAATACCTaaaaaaaGCCGCAGCTCGAGCCCTAACCAAGAACCTCCAAGTTCTCCTCC 961
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 CCAAATACCTAAAAAAAGCCGCAGCTCGAGCCCTAACCAAAAACCTCCAAGTTCTCCTCC 957
Query 962 CTAGAGTCTTGCCTGTCAAGGAACTGATCCGCTATGCAATAGTTCGCGCGCTTAAACGAA 1021
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 958 CTAGAGTCTTGCCTGTCAAGGAACTGATTCGCTATGCGATAGTTCGTGCGCTTAAACGAA 1017
Query 1022 GAACCTCCGCGAAAAGAGAGCCCGCGAGCTCAGGGATAGGTCTAAACCTAAAAACAGGGT 1081
||||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1018 GAACCACCGCGAAAAGAGAGCCTGCAAGCTCGGGGATAGGTCTAAACCTAAAAACAGGGT 1077
Query 1082 TGCAACATTTCTGTATTCACCCGGGAGGAAGAGCGATTATCGAAGGAGTTGGGAAAAGCT 1141
|||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 1078 TGCAACATTTCTGTATTCACCCCGGAGGAAGAGCGATTATCGAAGGAGTCGGAAAAAGTT 1137
Query 1142 TAGGGCTCACGGAATTCGACATCGAGCCAGCGAGAATGGCGCTTCATAGGTTCGGGAACA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TAGGGCTCACGGAATTCGACATCGAGCCAGCGAGAATGGCGCTTCATAGGTTCGGGAACA 1197
Query 1202 CATCTTCTGGTGGTTTATGGTATGTTCTTGGCTACATGGAAGCTAAGAACAGACTAAAGA 1261
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1198 CGTCTTCTGGTGGTTTATGGTATGTTCTTGGTTACATGGAAGCTAAGAATAGATTAAAGA 1257
Query 1262 AAGGTGAGAAGATACTAATGATGAGTATGGGAGCTGGATTCGAGTCTAATAATTGTGTTT 1321
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 AAGGTGAGAAGATACTAATGATGAGTATGGGAGCTGGATTCGAGTCTAACAATTGTGTTT 1317
Query 1322 GGGAGGTTCTAAAGGATCTTGATGATAAGAATGTTTGGGAAGATTCAGTTGATCGATATC 1381
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1318 GGGAGGTTCTTAAGGATCTTGATGATAAGAATGTTTGGGATGATTCCGTTGATCGATATC 1377
Query 1382 CGGAATTGTCGAGAATCCCTAATCCATTCGTTGAGAAGTATGATTGGATCAACGACGATA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CGGAATTGTCGAGAATCCCTAATCCATTCGTTGAGAAGTATGATTGGATCAACGACGATA 1437
Query 1442 CCATGAGCTTCGTTCGTGTTGATTGATCACAAGTAAGCAGAA-AATAACAAGATCG---- 1496
|||||||||| |||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1438 CCATGAGCTTTGTTCGTGTTGATTGATCACAAGTAAGCA-AAGAAAAACAAGATCGAAAC 1496
Query 1497 ------A-TTCTTTTT-AATATATTTGTCAATCAATT-ATTATATGAAATGTTTCTTTAT 1547
| || ||||| ||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 1497 ATTTTTATTTATTTTTAAATATATTTATCAATCAATTGGTTATAAGAAATGTTTCTTTAT 1556
Query 1548 CAGGCAATATTTCGAACTTTGGATTATTTGGAATGTTTAG----AC--G--GCTATAGTC 1599
|||| |||||||||| ||||||||||||||||||||||| || | |||||||||
Sbjct 1557 TAGGCGATATTTCGAAGTTTGGATTATTTGGAATGTTTAGACCAACAAGTTGCTATAGTC 1616
Query 1600 GACGATTGAtttttattttttaaaatttgaa-ataaataattaaagcatgtttaattggc 1658
||||||||| ||| |||||| ||||| || ||||| || || || ||| ||
Sbjct 1617 GACGATTGA--TTT-TTTTTT--AATTTCAATTTAAAT--TTGAA--ATAAATAA--AGC 1665
Query 1659 gttgttttgtattttattttattttttACAATTTGATTGTAGA-ATTGACTAGTAAACGA 1717
| | |||| |||||||| ||||||||||| ||||||||| |||||
Sbjct 1666 ----------A---T-GTTTA--TTTTACAAATTGATTGTAGATTTTGACTAGT-AACGA 1708
Query 1718 CCAATTGGTGTGTAGAGGTTGATATTTTAGAACAGTAAC-AAAAGAGTGTGTATTCAAGT 1776
|||| | || | | || ||||||||||||||| |||||| |||||||||||||
Sbjct 1709 CCAA-T--TG-CT----G-TG---TTTTAGAACAGTAACAAAAAGATTGTGTATTCAAGT 1756
Query 1777 TGGTGCATTTATTTTGTCAGAATTACATTATTGTGGCATACCCATTTATGAGTAAGACTC 1836
||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 1757 TGGTGCATTTATTTTGTCAGATTTGCATTATTGTGGCATACCTATTTATGAGTAAGAC-C 1815
Query 1837 AACAATAAATTTCATGTGTGTTCGCAGAT 1865
|||||||||| |||||||||||| |||||
Sbjct 1816 AACAATAAATCTCATGTGTGTTCACAGAT 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5